NO23G00070, NO23G00070 (gene) Nannochloropsis oceanica

Overview
NameNO23G00070
Unique NameNO23G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3108
Alignment locationchr23:29308..32415 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:29308..32415 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL037nonsL037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR095ncniR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008475NSK008475Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00070.1NO23G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO23G00070.2NO23G00070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO23G00070.3NO23G00070.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00070.1NO23G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO23G00070.2NO23G00070.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO23G00070.3NO23G00070.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00070 ID=NO23G00070|Name=NO23G00070|organism=Nannochloropsis oceanica|type=gene|length=3108bp
AGAGACTATCGAGCAAGTAAGCGGTAGCGGACTCAAGGGCCAGGCGCACG
CAAAGCAAATTGTGgtaagtgtgagagagagggacctctctagacggacg
tcgtcatgttgtagttgacaatcaataccctggccttgccctgcgttgtg
tgtgtcctaccctgctcttccgccttcagacacaagcatcatggaaaggg
cgacacagagcctgtcatcgtccttggcttctagctacttcctcatttag
caagataaccacgacgagacccgagtaatttaaacgtcgcacgcacggcc
cactctccatcaacctcacccaccactcaccgcccccgtgcctcccctca
cacttcacagCAGCAACAGCGGCAGCAGCAATAACCATGGATAGCAGCAT
GGTGGCCACACCGTCCGCGACACAAGACAGCCGCGTCAGCCACGGGCAAC
GGAGAAGAAGATCATGGACTCGTGGCACCTGCATTTCATCCTCCCCTTCC
GCCCTTCCCCTCCTCCTCCTCTCCCTCGCCCTCCTCCTCGTCCTTGACAG
CACCCACGCCTTTTTCTTCCACTCCTTTTACTCTTCTCCAAGCTCACCAA
GAAGATCACGGTCGTCATCATCATCGGTCCTTCCGTCTTCTTTTTCCTCG
TCTCCTTTAATTGCCATGCGCCTCTTTGCCCGTCAAAAGAACGAGAGCAG
CAGCAGCAGCAGCAGTAGCAGCGCTAGCAGTGCAGCAGCAGTGGAGGTGA
CCAGgtacgatgaaagagaatggaaggaggaggaatggaaggagggaatg
agggagtgagggagtggaaggaggtcctcgttggaagatttcgcctcttc
caacttccccggactgacaaagaatgaaaccgtcctgtacccctcacgcc
ctcccttcctccctccctccctccctccctacctctcttctctcctatct
ctacgactctacgacatagcagGCTCAGAAACGTGACCCCCCTCCAGGCC
CAGGGTAGTGCCGTACAAGATGTACCGCAAGACACAGAGATCGGGGGGCT
CACGTCAAGCGCCGAGGAAGgtgagggagggaggtagagagggagtaagg
agggagggggtgagagagaatggacgaccaacctggaatgcagatagatt
caacctgccgacacccacctgcctccctcctttccctcccttcctccctc
cctcgctccctccccaccccaagACCCGGCCATGCTCGGCACCCAAACGG
CCGCCGCCGCTGCCTCCGCTCCCTCGGTGGAGGACAACGACCCCTCCATG
AACCCCCTACCGCCGGCAGgtaaagagggagggagggagggagggaggga
gagcaggaagagggagggaaggacatcgctacttttttacacctccctcc
ttttatttttggatgttttttcccccaatttggtctataatcccctcccc
tccccctcgtcctccctcccaccctcctcctcaccaagCGACGAAGAAGA
GAGGCGGTGGGCGCGGTAAGCGGGCCAGCGCCTACGCGGAGCAGGACTGG
AGCGTTAAGACGAAGGATGACGTATGCAGGGCGACTATAAACGTCATTTC
CTCCGGGGATGAGAAAGATTTGCAGATGCTCACGCCTTTTGTAGAGCGTC
TGCTGACACGgtacgctttgtttccctccttaatggcctccctccctccc
tccctccctcccttcaaccactcacctctaccccctccttccttccctcc
ctccctccctccttccctccctccctccctccttccctccctccctccct
ccctaactccagCTACGGCGACCACGTGGAAATTTTGCACCGATCGTACG
TCCCGGACGACAAGCCCGGACTCCGCCTCCTCGAAATATGgtaatacaga
taaaagagaacccaccctccccccttcccctccttttctaattttgtctc
gtggattcattacttgtctttccttccctcctccccctcctacttttgtc
tctctctcttccccctccttccttcctgcacttgctcacctcctctaccc
ctctttttacctcccctcctcctcctcctcctcctcctcctcctcctcct
ctccctcctctccctcttccccctcctctccctcctctccctcttctccc
tcctctccctcctctccctccttcccctccttcccctccttctcctcctc
ctcctcctcctcctcctcctcctcctcctccagGTTCGAAGGCTTCGAGA
CCTTCCGGCTTTACTCGCGATACCAGTTCACCAAGAAGgttggaaggacg
gagggagggagggaaggagggagggagggaaggagggagggtgggacgaa
gggaaggagggagggaaggagggagggaggaaggaagaaagaatgtccat
tttggagggaatgtaaataaagagacctgagcgtcgggggaatcaaagtg
atgtgtatgcactcggacaacaccacccactaccccctcctccctccctc
cctccctccctctcttcctccctcttcagGGTAAACAAGGAGACCTGACC
GCCGAGAGCATCGAAGAGATGTGCACCAAGATTGACTACGCCATGTACTT
GGACGCTACGGGGGATTACGGCCCACTCTGAAGAGGAGGAGGGGGGATGG
AAGGAGGAGGAGGAGATGGGAGGAGTGGGTAATGCAAGCCTCTTTTGTCT
TAAAGTAGAAAGAGAAAAAGAAAGGAGAAAGGAGAAGGGGGAGTCGAAGA
GAAGAAAGAAGGGGGACAGATGAGAGAGGGCGAGAGAATTCGCCTTCCAC
ACCGTGAGAAGAAAGAAAAAACTATCAAGCAAAGACAAGGCAGGTGAGGG
AGGGAGGGAGGGAGTGACTGGTGGGAGAGTCCAGTATCCCAATTGCCTGC
AGTCTGAAAGATTAAAAGAGAGGGGGGCCTTTCCTTCCATAAAGGTAATA
ACCTCATCCTTTTTATCACTCCCTAGTCATGGAGGAGCGGGAAGGTTTAA
GAAGGACAAGAGAGAGAGGGAGCAAGAGAACGCATCGGCTTCTGCGAGAC
AGACGAGGAACGGAAAAAAGACAAATCCTAAATTGATTATCATCAAGATC
GAGCGACA
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protein sequence of NO23G00070.1

>NO23G00070.1-protein ID=NO23G00070.1-protein|Name=NO23G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MDSSMVATPSATQDSRVSHGQRRRRSWTRGTCISSSPSALPLLLLSLALL
LVLDSTHAFFFHSFYSSPSSPRRSRSSSSSVLPSSFSSSPLIAMRLFARQ
KNESSSSSSSSSASSAAAVEVTRLRNVTPLQAQGSAVQDVPQDTEIGGLT
SSAEEDPAMLGTQTAAAAASAPSVEDNDPSMNPLPPAATKKRGGGRGKRA
SAYAEQDWSVKTKDDVCRATINVISSGDEKDLQMLTPFVERLLTRYGDHV
EILHRSYVPDDKPGLRLLEIW*
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protein sequence of NO23G00070.2

>NO23G00070.2-protein ID=NO23G00070.2-protein|Name=NO23G00070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MDSSMVATPSATQDSRVSHGQRRRRSWTRGTCISSSPSALPLLLLSLALL
LVLDSTHAFFFHSFYSSPSSPRRSRSSSSSVLPSSFSSSPLIAMRLFARQ
KNESSSSSSSSSASSAAAVEVTRLRNVTPLQAQGSAVQDVPQDTEIGGLT
SSAEEDPAMLGTQTAAAAASAPSVEDNDPSMNPLPPAATKKRGGGRGKRA
SAYAEQDWSVKTKDDVCRATINVISSGDEKDLQMLTPFVERLLTRYGDHV
EILHRSYVPDDKPGLRLLEIW*
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protein sequence of NO23G00070.3

>NO23G00070.3-protein ID=NO23G00070.3-protein|Name=NO23G00070.3|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MDSSMVATPSATQDSRVSHGQRRRRSWTRGTCISSSPSALPLLLLSLALL
LVLDSTHAFFFHSFYSSPSSPRRSRSSSSSVLPSSFSSSPLIAMRLFARQ
KNESSSSSSSSSASSAAAVEVTRLRNVTPLQAQGSAVQDVPQDTEIGGLT
SSAEEDPAMLGTQTAAAAASAPSVEDNDPSMNPLPPAATKKRGGGRGKRA
SAYAEQDWSVKTKDDVCRATINVISSGDEKDLQMLTPFVERLLTRYGDHV
EILHRSYVPDDKPGLRLLEIWFEGFETFRLYSRYQFTKKGKQGDLTAESI
EEMCTKIDYAMYLDATGDYGPL*
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Synonyms
Publications