NO22G02160, NO22G02160 (gene) Nannochloropsis oceanica

Overview
NameNO22G02160
Unique NameNO22G02160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3622
Alignment locationchr22:672030..675651 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:672030..675651 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO22G02160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR104ngnoR104Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G02160.1NO22G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|108811gene_7233Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G02160.1NO22G02160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G02160 ID=NO22G02160|Name=NO22G02160|organism=Nannochloropsis oceanica|type=gene|length=3622bp
TCGTAGTGGACATGCGGGACATGCGTGGTGTATGGGTTTGGTGTGGAAAC
ATTGTACAACAGGGAAAGAAGGCATCACTGTCTGATCGTGCGTCATCCAT
GCGCCAGGCCAAGAACTCGTCGCGCCCTGATTCTTCGTCTCTTTTGCCTA
AGGCTTTCCAAGGAAGTCTTCTGTTCTGACGTATCGTGCACATTCAACAT
TAACGCGCTGGATCTCCTCAGTCTCACTCACTCACTCCAATCCTCTCGTT
AAAAACCTCCCCTCTCCTGCAACAGAGTTGGTCGTTTCAACTCAAAAATG
GGCTTCCACTTGCTTCTTCCCAACTCATTACCTTCCACAAACCCGCCACC
GATACCCCCGCACAGGACACTGGAAACGATGCTTCGCATGACAAACGACC
AATACCAGGCCTCAGAGCATGAGAAGAAAGTGACAACGGCCACTTCTGCC
TCACAGAGCAGCAGCAGTTGCGACAGCATCACCAACCCTCTCTCCCCCTT
CGCCTACACGGCTGCCCAGCTCCCCACCCTCTCCCGCTTTCTCCAAGCTT
CCCTGAATCCGTCCGCAGATGTGCTGTCCGCGCGGGGTCTGCCCTTGCCA
GAGCAGCGGGTGGAGGCCGGGAGGACCTTTCGCGACCGGGCTCTGTCGCA
TTTGACTGCTGATGCGGATTACGCACGTGCCGTAATCGAGCTGGAAAGCG
CCTTGGGAGTCCTTCGCTACCTCCGTCCGTACCCTTCTTCAACTATCGCT
GGAGATAGAAATGGATGTGAGGAGTGGAACGCAGCCGCTCCTGTCGCTGC
CGCTGGATCAGTTGGAGTAACTTCTACCTCTCCTCTTTACGAGGACTATC
AACCCCTCCTCTCCTCCTTATCCTCATCCTCATCCTCCTCCTCTTCCTCC
ACCCCCATCTCCTCCTCCTCTTCCTCCATCTCCTCCTTCCCCCTATGTAC
TCCCAGTTCTTCTACAGCAGCCAAGGCACTTGCACTCTCATGCTACTCGC
ACCTGGCCATCTGTTACTTCCATCTGGGTGATTACAAGTCCGTGATCGCT
GCGAGCCAAGATGCCATGCTCCTCCAGGAGGGAGGGAGGGAGGGGGGGAG
GGAGGAAGCACCGACAAACGCCTCTAACGCCCGATCTCCCACCTCGTCCT
CTAAGCCTCTCTTCTTACCTGCAGATCGGGCCCGCCTCCTCTACTGGCGC
GGCAAAGCCAGAGCCGCGGAGGGTGAGAGAATGCTTGACAAGCGACAAGA
ACAACACCTAAAGCAGCAGCAGCAGCATAAAGGAAGCGTACGCTTCAAGG
GTGTAGACAAAAAGGAAGTTGAAGAACAGACCAGGAGATCGAAGCCAGCT
TCTCCTGCCCCTCTCTCCCCTCCTCCTTCGCTTCCCCGACAAGTTTTTCA
GCAGCAGTCGCCCCAGCAGCGTCAGCAGTATGAGCAGCAGCCCTCCCTCC
TCTTCTCCCTTGCCGTGAAAGACCTCAAAGAGGCTTTACGGGAAGATCCA
AACAATCGTCAAGTCCGCAGTGAGTACTTTAGAGTGAAAAAGCTCATAAA
GGAGGAGGGCGGGAAGGAGGAAATGAAGGAGGGAGGGCGAGGCAAGTGGA
AGGGACAGACATGGTTGCGGTTGCTTGCCGTGGCCAGGGGGTATGGAGGG
AGGGAGGGAGGGAAGGAGGGAGGGTTGTCAGGTAGCTTGGAGGGGAAGAA
GAAGGAGACGGTGAACAAAGCAAGTGGAGAAGAGAACCAGGAAGAAAAGG
AAGATGAGGAGGAGCAGCAGAAGCAGCAGCAGTGGGAGGGGGAGGAAACC
AAAGAGGAGGAGCCGACAGACCCTGATCCTTCCCACCGGCCTTCCCTCCC
TTCCTCCGCCCCTTCCTCCCTGGCTGCAGCCCAAGCATTCACTCTCGTGA
CGGAGCAGCAGCCACAGGTAGAGACTCCCTCCCTCCCTTCTTCCCCGACT
TCCTCTCAACTCTTGCCTATGGCGGGAGAGGTGGCGCGTGAGAGGAGGGC
TTCGGGCCGAGGGCGGGAAAGACGGGAAGGGGCACCCTCCACACGTCCCC
CCCTCCCACCCTTCCTCGTGGCCTTGCACCCCACGAGTGTTGCAGGGCAG
AGGAGACGATTGGAATGGGTGGCGAGGGAGAGCGAGGCCCAGGGAAGGGT
AGGAGAGGCAAGGGAGATGCGAGCGGCTGCTGCGGAGAGCGGAGCATGGC
TGGAGGGGTATGCGCAAGTCACCGGTTCCTCCCTCCCTCCCTCGTCCTCG
CCTTTGGGGAAGAAGAGAGCCACAGGGCATAGAGTGCTTTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTTTTCATCCACCCGTTCCTCCTCTGCGTCGAGAGCACGTTTGTTAGCG
TCACAATCAGCACGAGGAAGAGGAGAAGCAAGTACAGGGGTGTGTACGTT
TCTTCGACAGCAGCAGCACCGCCAGCACCAGCAGCACCAGCAGCGGGAAG
AAGGGAGGGAGGAAGGGAATGAACACAAGAAGCATCACGACCACCACGAG
CAGCAGTTGTTGACATCCTCTCGCTCCTCGAGTAGGGCCAGCAGTACTAA
CAGCCTTGTTCAAGCTTCCCCTGATCCCCCCCTCCCTTGCTTCTCCTCCA
TTTCCTCCATCCCCTCCTCCTCGCAACACCTCGTCTTCCCTCCCGCCCTC
CGCGTCGCGGCTGCTACTTCTCTGGGGCTGGACCTGGACGACCCTTCTGT
AGCTGCGGCCTTGTACACTCTCTTACTCTCTCTCCCTCGTTCGGAGGAGG
GAAAGCAGGGAGGGAGGGTGAAGAGGGGCGTTTTTGTGAAGAGGATGAGA
GGAGGAGGGAGGGAGGGAGGGATGGGGAGGAGGGTGTTTGTCGTGCTGAT
TTCGTTCTTGTGCTTAATGGTCGGGTTGTGGATGGGGGTGGAGATGGAGT
ACGTGGATAGAAGCTTTTTTACCAGCCCGTCCTCTTCTTCCCTGAAAGAA
AGTGGAGGAGGACGTGAAGGAGGACGAGGGAGGAAGGAGGAAGGGAGGGA
AGGGAGGGAAGGATGGCGATTAATGGTACCTACGCCCGTGGGAATGTTTG
AAGGGGAGATTGAGAGCAAAGTGCGATGGGAAGAGAGGGAAGGGGGACAA
CGTGCGGCATCTTTGGTGGTGCCTTAGGGAGAAGGTGGGTCAAAGATAGG
GGATAAAGAAGGAGGGAGGGGAGGGGAGAGACAGGGTGAAGGATGAAAAA
GGAGGGGGGGGAAGTAAGATTATGTCTTGACACTCGTCTTTTACTTTTCA
CAATGCAGTTTTTAGCTGATTTGACTGAGCATATCATGTCTTGTGTTCCT
TTTCCTCTTTTACTCTTTAACGATTAGCTTTGCCCGTTTGTTTGCTTTGC
TGCGAGTGGCCCATCTCGTCGGTTTACTCTCACAATGTCAAGGCCAAAAA
AGGCAACCATTCACCCCCCAAGCTCAAACAAAGCAAATCTCCTCCAAGAA
TGCATCAACTAAGATATCCCTGATTTCTTTTCATGGAAACATGTTCTCTT
TGCCACACTTTAGCTTCTTGATTTTTTAATCAAATTCAACCCGACCCCTT
TCTCGTTCAAGTTGATGCTCAT
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protein sequence of NO22G02160.1

>NO22G02160.1-protein ID=NO22G02160.1-protein|Name=NO22G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=960bp
MGFHLLLPNSLPSTNPPPIPPHRTLETMLRMTNDQYQASEHEKKVTTATS
ASQSSSSCDSITNPLSPFAYTAAQLPTLSRFLQASLNPSADVLSARGLPL
PEQRVEAGRTFRDRALSHLTADADYARAVIELESALGVLRYLRPYPSSTI
AGDRNGCEEWNAAAPVAAAGSVGVTSTSPLYEDYQPLLSSLSSSSSSSSS
STPISSSSSSISSFPLCTPSSSTAAKALALSCYSHLAICYFHLGDYKSVI
AASQDAMLLQEGGREGGREEAPTNASNARSPTSSSKPLFLPADRARLLYW
RGKARAAEGERMLDKRQEQHLKQQQQHKGSVRFKGVDKKEVEEQTRRSKP
ASPAPLSPPPSLPRQVFQQQSPQQRQQYEQQPSLLFSLAVKDLKEALRED
PNNRQVRSEYFRVKKLIKEEGGKEEMKEGGRGKWKGQTWLRLLAVARGYG
GREGGKEGGLSGSLEGKKKETVNKASGEENQEEKEDEEEQQKQQQWEGEE
TKEEEPTDPDPSHRPSLPSSAPSSLAAAQAFTLVTEQQPQVETPSLPSSP
TSSQLLPMAGEVARERRASGRGRERREGAPSTRPPLPPFLVALHPTSVAG
QRRRLEWVARESEAQGRVGEAREMRAAAAESGAWLEGYAQVTGSSLPPSS
SPLGKKRATGHRVLSSSSSSSSSSSSSSSSSSSSSFSSTRSSSASRARLL
ASQSARGRGEASTGVCTFLRQQQHRQHQQHQQREEGREEGNEHKKHHDHH
EQQLLTSSRSSSRASSTNSLVQASPDPPLPCFSSISSIPSSSQHLVFPPA
LRVAAATSLGLDLDDPSVAAALYTLLLSLPRSEEGKQGGRVKRGVFVKRM
RGGGREGGMGRRVFVVLISFLCLMVGLWMGVEMEYVDRSFFTSPSSSSLK
ESGGGREGGRGRKEEGREGREGWRLMVPTPVGMFEGEIESKVRWEEREGG
QRAASLVVP*
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Synonyms
Publications