NO22G02060, NO22G02060 (gene) Nannochloropsis oceanica

Overview
NameNO22G02060
Unique NameNO22G02060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3166
Alignment locationchr22:638425..641590 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:638425..641590 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO22G02060 vs. NCBI_GenBank
Match: EWM20546.1 (hypothetical protein Naga_100685g1 [Nannochloropsis gaditana])

HSP 1 Score: 296.6 bits (758), Expect = 2.600e-76
Identity = 156/225 (69.33%), Postives = 179/225 (79.56%), Query Frame = 0 
Query:    1 MLTAAFKTAHSQGQIERQRVIQTLRVWTVEQYITGYDRTWGVAPFILNFLNITDDELDREALQKMAVAHKENEARMQEGGKGRGSAGRAVVDLRKLSTFRALDDGETPLLLMRFVGQRLVTVVNSSFEQSFFTSTEIEAQREAASMILEFVLAKAVVVEDRPSFFATLARSIFGGELNVCQLLRFKSRAGRSFLALFRLRGVYIEEVRAGVGVITIEELPSSSRY 226
            ML +AF++A++QG IER+RVIQTLRVWTVEQYITGYD TWGVA +IL  L ITD+EL+R AL  MA AHK  E R    G G        +DLR L TFR LDDGETPLLLMRF GQRL TVVN++FE SFFTS EIEAQR+AASMILEFVLAKAV VEDR +FF TLARS+FGGE NV QLL+F+ R GRS ++LFRLRGVY+EE+RAGVGVIT+  LPS  +Y
Sbjct:  339 MLASAFQSAYAQGHIERERVIQTLRVWTVEQYITGYDHTWGVAGYILKILKITDEELNRAALSTMAEAHKILEQRPSTDGSGS-------IDLRSLPTFRVLDDGETPLLLMRFKGQRLTTVVNAAFESSFFTSAEIEAQRKAASMILEFVLAKAVAVEDRLAFFETLARSVFGGESNVSQLLKFQKRNGRSVVSLFRLRGVYVEEIRAGVGVITVAALPSPLKY 556
[Close]
BLAST of NO22G02060 vs. NCBI_GenBank
Match: EWM22836.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 75.5 bits (184), Expect = 9.300e-10
Identity = 75/281 (26.69%), Postives = 112/281 (39.86%), Query Frame = 0 
Query:    2 LTAAFKTAHSQGQIERQRVIQTLRVWTVEQYITGYDRTWGVAPFILNFLNITDDELDREALQKMA-----VAHKENEAR---------------MQEGGKGRGSAGRAVVDLRKLSTFRALDDGE--------------------------------------TPLLLMRFVGQRLVTVVNSSFEQSFFTSTEIEA-QREAASMILEFVLAKAVVVEDRPSFFATLARSIFGGELNVCQLLRFKSRAGRSFLALFRLRGVYIEEVRAG-VGVITIEELPSS 223
            + AAF   H +G+  R + + TLR+W  E    G D +WG +  +   L ++++EL     Q        V   E EA+               ++E  K  G  G     +  L+TF+ALDDGE                                      T LL   F G+R +  +   FE++F T  E E        +++ +++A  VV  DR  FF  +A   FG  L    LL+   +  R FLA+ RL  +   E  AG V V+T+   P S
Sbjct:  177 MAAAFHRLHREGRCCRHKALVTLRMWRREAGARGCDVSWGASEEVGVALGVSEEELGERGRQDAKAMGWDVMETEGEAQGNPGRSRLAAAADVHVRELEKKEGGQGPVCAWIEGLATFQALDDGEGVWEEGAGLFSPAGEGPGGDHVGFWSRLHSKRSQVDGSTALLFSLFDGRRQLCALGRHFERNFLTRAEWEGLMTSGPPVLVPYLVASLVVGGDREDFFDVVADLYFGKALQASALLKVFDKDMRPFLAVLRLALLPPTEEGAGLVEVLTLRRSPCS 457
The following BLAST results are available for this feature:
BLAST of NO22G02060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM20546.12.600e-7669.33hypothetical protein Naga_100685g1 [Nannochloropsi... [more]
EWM22836.19.300e-1026.69Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR104ngnoR104Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G02060.1NO22G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|107928gene_7223Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100685g1gene9861Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G02060.1NO22G02060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G02060 ID=NO22G02060|Name=NO22G02060|organism=Nannochloropsis oceanica|type=gene|length=3166bp
ATGCTGACCGCCGCGTTTAAGACCGCTCACTCTCAAGGGCAAATAGAGCG
GCAGCGAGTCATTCAAACACTGCGGgtacgtcctccctccctccctcgct
ccctcgctccctccctcgctccctcgctccctccctccctccctttgaga
caaatatcgcctctttgtctggcccagcgaaaatgtgtgatcccaaagac
cgtcagtagccccttcagatcttggcgctcaatcctcccttcctccctcc
ctcccaccctccttccctcccaagGTCTGGACAGTGGAGCAATACATCAC
TGGCTACGATCGGACCTGGGGTGTGGCCCCCTTCATTTTGAATTTTTTAA
ATATAACGGACGATGAGCTCGATCGAGAGGCCTTGCAAAAGATGGCGGTG
GCTCACAAAGAGAACGAGGCGAGGATGCAAGAGGGAGGGAAAGGGAGGGG
CTCCGCAGGACGGGCAGTGGTGGACTTGCGGAAGTTGTCAACGTTTCGGG
CGTTGGATGACGGAGAGACACCGTTACTGCTCATGCGTTTCGTGGGGCAA
CGGCTGGTGACCGTTGTAAATTCGTCCTTTGAACAATCCTTCTTTACCTC
CACGGAAATTGAGGCTCAACGCGAGGCGGCTTCCATGATCCTTGAATTTG
TTTTGGCCAAGgtacgtccctccctccctccctacctctcttcctccctt
cctctctcccaccctccctccctccctttctctcgccctccctccctccc
tccccccttgctggttgtagcagtgtgtggcgcagcggctcaccagcatc
gcatccgggtataatatcagattgaaaattattatttttttggtagaagg
gtggaatggccattaacccttcccctccctacctccctccctccctccct
ccctctctcccacccttccagGCTGTCGTGGTGGAGGACCGTCCTTCGTT
CTTCGCAACGCTCGCCCGATCCATTTTTGGGGGAGAGCTCAACGTCTGTC
AGCTCCTGCGCTTTAAGAGCAGGGCGGGGAGGTCATTTCTCGCGTTGTTT
CGTCTTCGAGGTGTGTATATAGAGGAGGTTAGGGCTGGGGTTGGCGTCAT
CACCATCGAAGAGCTTCCGTCCTCGTCCCGGTATGACGTGCGAGAAAGGA
CGGTGGTCCAGCAGCAGCAGCAGTACGACAATCAGCAGCAGCAGCAGTAT
GACAAACAGCAGCAGCCGCCGCCTAGGGAGGGGTGTGACGAAGTCCACGC
GGTGGAAAGGAGGGAGGAGAAGGAGAAGGAGGATGGGGAGGAGGACGAGG
GAGAGAGGGCAGGGAGAGGGTCGTCCATGGCAGCGTTTTTGAAAAGCGCT
GGTGTGAGCGGTGGGCCGGCGCTGGAGAAGAGGAGGGGAGGAGGAGCAAA
AGGGGAAGGAAGGGGAGGAGGAGGGAGGCGTACTCCTCTCCAGCCCCAGT
CCCCTTCGCGCCATCTACACGCCCCTCCCTCCTCGCCCTCCCTTCGTCCC
TCATCCTCGTTCCCTCCTGCCCCCGGCGGCCGGAGCAGAGGCAACAGCAT
CAGCAGCACCAACAGCGCCAGCAGCAACACCAGCAGCAGCAGCAACGCCA
GCACACCGGCCTCTATTCATGTCTCTGATCTCACGGGGATGGTCGGGCCC
GGCTTCGGCTTCCCCCCCCCTCCTCCTTCCCTCCCCAGTGCTACAGCCCT
GAAGGCCTCCTCTATTTTCTTTGCCACATGCCTTGGCGGGAAAAAGGGAG
GGGCGGACGGGGAGGACACGTCTTGTCAACTTCCTTCTGCTCCTCGAGCT
CCCTCTTCTTCTTCTTCCTTGTGGTCCTCGTCCTCCTCCTCTGCAGTCCA
TGGAAACGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GAGGAAAACGACCCCGGTACACTTCAATGGCTGAGGGAAATGGCGGCGTT
GTCGAGCAGGCTCAGAGGCGAAAAACGTGGGATCCTCCCACTCCCTCCCT
CCCCCCCTCCTTTCCCACCAAGCGAAAAAGCACCGCAGACCACCTGAGGC
CTCTGGCAGGAGGAGAAGGAGGGCAGGAGGGAGGAAGGGAAGGAGGAAAG
GGGAGAAGGCCACCCTCGTCGCAGCAACGAGAACGGCAGTATCTCCACCA
CCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTCTAGAACAACATCAAC
AGCACTACGGACAGCAACAGCAGCAACAGTACTCCCAAGAGACGCAGCAG
CAACAGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCGGCAGCAAAAGAACCCGTTTCAGCTTCCGC
CATACGTGGAGGGGAGCGGGGGCATGGGTAAAAGGGGAAGGCCTGCATCG
TCCTCCTCCCTTCCTCCTTACCCTCCAACTACGCCTGTAGGCCAGGAGCG
GGAGGGGGAGGGAGGGAGGGAGGGAGGGGGGGACAAAGAGACAAATAATA
GTAGGAGAAAGGAACATATCAAGCTCTTCTTACTGTCGGATGGGCCGCCT
GCTTCTGCCCCTCTCCGTCCTCCCCTTCCCTTTCCCTCCCCCCACCTCTC
CTCCTCCTTCGCCCCCTCCGCCTCGTCTTCCTTCCTCTTCCCTCTTACAA
GCATAACGCATACCCCGCAGAAGCAAGAGGGACAGCAGCAGGACCAGCAG
CAGCAGGAGGAGGAGCAGCAGCAGGGGCAGCAGCAGGAGGCGCAGCAGCA
GCAGCAACAACAACAGCACCCACAGCAATTACTCTTCTCCTCATCCACCA
CTTGCACTGAACCTTTTGAAGGAAAGGACACCGACGGCGTGAGGGAGGGA
AATGAAGACATGAGCCTCATGGCCGTTGTTCCTCTTTCCCTCCCTCCATC
CCTCCCTCCCTTCCCCCTCCTTCCCTCCCTCCCTTCCTTCCTCTGCCTTC
TCAGCAGGAGCTTGGAACGACGGCCATGCCAACAGACACAGGAGCAGCAG
CACCACTATCAACAGCAGGCCTGGAAGGGTTGCAATTACAGGGAGGAAAG
GAGGAAGTGCGGGAGAGAGGGGGAGGGCCAGAGGCTTCGGAAAATGCGTC
AATGATTCAGCCGTACTCGGAGCTTGACTTCCTGAGTGATCGTATTTTCG
AGGAGGAGGGAGGGAG
back to top

protein sequence of NO22G02060.1

>NO22G02060.1-protein ID=NO22G02060.1-protein|Name=NO22G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=882bp
MLTAAFKTAHSQGQIERQRVIQTLRVWTVEQYITGYDRTWGVAPFILNFL
NITDDELDREALQKMAVAHKENEARMQEGGKGRGSAGRAVVDLRKLSTFR
ALDDGETPLLLMRFVGQRLVTVVNSSFEQSFFTSTEIEAQREAASMILEF
VLAKAVVVEDRPSFFATLARSIFGGELNVCQLLRFKSRAGRSFLALFRLR
GVYIEEVRAGVGVITIEELPSSSRYDVRERTVVQQQQQYDNQQQQQYDKQ
QQPPPREGCDEVHAVERREEKEKEDGEEDEGERAGRGSSMAAFLKSAGVS
GGPALEKRRGGGAKGEGRGGGGRRTPLQPQSPSRHLHAPPSSPSLRPSSS
FPPAPGGRSRGNSISSTNSASSNTSSSSNASTPASIHVSDLTGMVGPGFG
FPPPPPSLPSATALKASSIFFATCLGGKKGGADGEDTSCQLPSAPRAPSS
SSSLWSSSSSSAVHGNGGGREGGREGGREGGGKRPRYTSMAEGNGGVVEQ
AQRRKTWDPPTPSLPPSFPTKRKSTADHLRPLAGGEGGQEGGREGGKGRR
PPSSQQRERQYLHHHQQQQQQQQQLLEQHQQHYGQQQQQQYSQETQQQQQ
QQQQQQQQQQQQQQQQQQQQRQQKNPFQLPPYVEGSGGMGKRGRPASSSS
LPPYPPTTPVGQEREGEGGREGGGDKETNNSRRKEHIKLFLLSDGPPASA
PLRPPLPFPSPHLSSSFAPSASSSFLFPLTSITHTPQKQEGQQQDQQQQE
EEQQQGQQQEAQQQQQQQQHPQQLLFSSSTTCTEPFEGKDTDGVREGNED
MSLMAVVPLSLPPSLPPFPLLPSLPSFLCLLSRSLERRPCQQTQEQQHHY
QQQAWKGCNYREERRKCGREGEGQRLRKMRQ*
back to top
Synonyms
Publications