NO22G01910, NO22G01910 (gene) Nannochloropsis oceanica

Overview
NameNO22G01910
Unique NameNO22G01910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1839
Alignment locationchr22:571190..573028 +

Link to JBrowse

Properties
Property NameValue
Description39S ribosomal protein L47
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:571190..573028 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005761mitochondrial ribosome
GO:0005840ribosome
GO:0005761mitochondrial ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR036049Ribosomal_L29/L35_sf
IPR010729Ribosomal_L47_mit
Homology
[Close]
BLAST of NO22G01910 vs. NCBI_GenBank
Match: XP_005800596.1 (39S ribosomal protein L47, mitochondrial [Xiphophorus maculatus])

HSP 1 Score: 96.3 bits (238), Expect = 1.100e-16
Identity = 51/88 (57.95%), Postives = 59/88 (67.05%), Query Frame = 0 
Query:   72 RRGLEEFFDQTRAPHEP-VQVGRAWTADELRRKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMARIKLVLKE 159
            RRGLEEFFDQ     E  V+ G  WTA +LR KS  DLHKLWYVL KERN+LLT E   KR RV +PSP R   + +SM R+  V+KE
Sbjct:   74 RRGLEEFFDQPENWGESNVKSGAPWTAKQLRTKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRVQMPSPERMKKIERSMVRLDTVVKE 161
[Close]
BLAST of NO22G01910 vs. NCBI_GenBank
Match: XP_012733296.1 (39S ribosomal protein L47, mitochondrial [Fundulus heteroclitus])

HSP 1 Score: 96.3 bits (238), Expect = 1.100e-16
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 0 
Query:   72 RRGLEEFFDQTRAPHEP-VQVGRAWTADELRRKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMARIKLVLKE 159
            RRGLEEFFD      EP V+ G  WTA +LR KS  DLHKLWYVL KERN+LLT E   KR RV +PSP R   V++SM R++ V+ E
Sbjct:   82 RRGLEEFFDHPENWGEPTVKSGAPWTAKQLRTKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRVQMPSPERLRKVQRSMIRLETVVNE 169
[Close]
BLAST of NO22G01910 vs. NCBI_GenBank
Match: XP_012896248.1 (uncharacterized protein [Blastocystis hominis] >CBK22200.2 unnamed protein product [Blastocystis hominis])

HSP 1 Score: 95.9 bits (237), Expect = 1.400e-16
Identity = 49/88 (55.68%), Postives = 57/88 (64.77%), Query Frame = 0 
Query:   71 PRRGLEEFFDQTRAPHEPVQVGRAWTADELRRKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMARIKLVLKE 159
            P+RGLEEF  QT    + V  GRAW + ELR KSF DLHKLWYVL KERN LLTE+  C+   V +  P R   V+ SM R+K VL E
Sbjct:  953 PKRGLEEFVSQTSVAGKDVVYGRAWKSSELRLKSFDDLHKLWYVLLKERNALLTEKYDCESRNVAMVHPERLHKVKLSMKRLKGVLGE 1040
[Close]
BLAST of NO22G01910 vs. NCBI_GenBank
Match: XP_008406237.1 (PREDICTED: 39S ribosomal protein L47, mitochondrial [Poecilia reticulata])

HSP 1 Score: 95.1 bits (235), Expect = 2.400e-16
Identity = 49/88 (55.68%), Postives = 60/88 (68.18%), Query Frame = 0 
Query:   72 RRGLEEFFDQTRAPHEP-VQVGRAWTADELRRKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMARIKLVLKE 159
            RRGLEEFFDQ     EP V+ G  WTA +LR KS  DLHKLWYVL KERN+LLT E   KR  + +PSP R   +++SM R+  V++E
Sbjct:   74 RRGLEEFFDQPENWGEPNVKSGAPWTAKQLRTKSNEDLHKLWYVLLKERNMLLTLEQEAKRQSLQMPSPERMKKIQRSMVRLDTVVRE 161
[Close]
BLAST of NO22G01910 vs. NCBI_GenBank
Match: OAO15305.1 (ribosomal protein L29 family protein [Blastocystis sp. ATCC 50177/Nand II] >OAO17489.1 ribosomal protein L29 family protein [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 94.0 bits (232), Expect = 5.500e-16
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 0 
Query:   71 PRRGLEEFFDQTRAPHEPVQVGRAWTADELRRKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMARIKLVLKE 159
            P RGLEEF + +    + +  GRAW + ELR KS+ DLHKLWYVL KE+N+LLTE+  CK   V +P P R   V+ SM R+K VL E
Sbjct:   14 PVRGLEEFVEASSTAGKDIVYGRAWKSSELRLKSYDDLHKLWYVLLKEKNLLLTEKYDCKSRNVVMPHPERLHKVKLSMKRLKGVLAE 101
[Close]
BLAST of NO22G01910 vs. NCBI_GenBank
Match: XP_023333162.1 (39S ribosomal protein L47, mitochondrial-like [Eurytemora affinis])

HSP 1 Score: 94.0 bits (232), Expect = 5.500e-16
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 0 
Query:   72 RRGLEEFFDQTRAPHE-PVQVGRAWTADELRRKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMARIKLVLKE 159
            RRGL+EFF++ +   E  ++VGRAW  DELR KS SDLHKLW+VL KERN+LLT EA+ +   V +P+P RK  V +SM  ++ V+KE
Sbjct:   35 RRGLDEFFEEEKMRGEDKIRVGRAWKPDELRLKSNSDLHKLWFVLLKERNMLLTMEAAYQDKYVAMPNPERKDKVEESMENLEEVVKE 122
[Close]
BLAST of NO22G01910 vs. NCBI_GenBank
Match: KNE56218.1 (hypothetical protein AMAG_02052 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 93.6 bits (231), Expect = 7.100e-16
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = 0 
Query:   73 RGLEEFFD-QTRAPHEPVQVGRAWTADELRRKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMARIKLVLKE 159
            RGLEEFF+ +T  P E +  GRAW A ELR+KSF DLHKLWYVL KERN+L T++   KR  V      R    +KSMARIK VL E
Sbjct:   24 RGLEEFFETKTSVPTEQIPAGRAWEASELRQKSFEDLHKLWYVLLKERNLLATQKLEAKRLNVEFLHKDRVVKCKKSMARIKGVLTE 110
[Close]
BLAST of NO22G01910 vs. NCBI_GenBank
Match: XP_020354074.1 (39S ribosomal protein L47, mitochondrial [Oncorhynchus kisutch])

HSP 1 Score: 93.6 bits (231), Expect = 7.100e-16
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 0 
Query:   72 RRGLEEFFDQTRAPHEP-VQVGRAWTADELRRKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMARIKLVLKE 159
            RRGLEEFFD      EP V+ G  WTA +LR KS  DLHKLWYVL KE+N+LLT E   KR R+ +PSP R   + +SM R+  V+KE
Sbjct:   70 RRGLEEFFDIPENWGEPTVKSGAPWTAKQLRTKSNEDLHKLWYVLLKEKNMLLTIEQESKRQRIQMPSPERLKKIERSMKRLDTVVKE 157
[Close]
BLAST of NO22G01910 vs. NCBI_GenBank
Match: XP_020654716.1 (39S ribosomal protein L47, mitochondrial [Pogona vitticeps])

HSP 1 Score: 93.6 bits (231), Expect = 7.100e-16
Identity = 49/88 (55.68%), Postives = 60/88 (68.18%), Query Frame = 0 
Query:   72 RRGLEEFFDQTRA-PHEPVQVGRAWTADELRRKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMARIKLVLKE 159
            RRGLEEFFD  +    + V+ G +WT ++LR KS  DLHKLWYVL KERN+LLT E   KR  V +PSP R   V+ SM R+ LV+KE
Sbjct:   58 RRGLEEFFDDPKNWGEKKVKSGDSWTVEQLRGKSNEDLHKLWYVLLKERNMLLTLEQEAKRQGVAMPSPERLDKVKASMERMDLVIKE 145
[Close]
BLAST of NO22G01910 vs. NCBI_GenBank
Match: XP_024276675.1 (39S ribosomal protein L47, mitochondrial-like [Oncorhynchus tshawytscha])

HSP 1 Score: 93.6 bits (231), Expect = 7.100e-16
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 0 
Query:   72 RRGLEEFFDQTRAPHEP-VQVGRAWTADELRRKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMARIKLVLKE 159
            RRGLEEFFD      EP V+ G  WTA +LR KS  DLHKLWYVL KE+N+LLT E   KR R+ +PSP R   + +SM R+  V+KE
Sbjct:   70 RRGLEEFFDIPENWGEPTVKSGAPWTAKQLRTKSNEDLHKLWYVLLKEKNMLLTIEQESKRQRIQMPSPERLKKIERSMKRLDTVVKE 157
The following BLAST results are available for this feature:
BLAST of NO22G01910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005800596.11.100e-1657.9539S ribosomal protein L47, mitochondrial [Xiphopho... [more]
XP_012733296.11.100e-1657.9539S ribosomal protein L47, mitochondrial [Fundulus... [more]
XP_012896248.11.400e-1655.68uncharacterized protein [Blastocystis hominis] >CB... [more]
XP_008406237.12.400e-1655.68PREDICTED: 39S ribosomal protein L47, mitochondria... [more]
OAO15305.15.500e-1652.27ribosomal protein L29 family protein [Blastocystis... [more]
XP_023333162.15.500e-1654.5539S ribosomal protein L47, mitochondrial-like [Eur... [more]
KNE56218.17.100e-1657.47hypothetical protein AMAG_02052 [Allomyces macrogy... [more]
XP_020354074.17.100e-1655.6839S ribosomal protein L47, mitochondrial [Oncorhyn... [more]
XP_020654716.17.100e-1655.6839S ribosomal protein L47, mitochondrial [Pogona v... [more]
XP_024276675.17.100e-1655.6839S ribosomal protein L47, mitochondrial-like [Onc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01910.1NO22G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672179gene_7205Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01910.1NO22G01910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01910 ID=NO22G01910|Name=NO22G01910|organism=Nannochloropsis oceanica|type=gene|length=1839bp
TGCTTGAGCTGTGTATGTAGTCTGCGTGGTACGAAATTGAACGCGTCAGT
GGGGTGAGTAGGGGGGAGGTAATCGAGGATAGGTTTGTTTGCAGAACTGC
CAAAAAGCAAGCGCTACGGTGTATGTGAATTTATGGACAGCTTGCTAGTC
ATACAGTGGGCCTGAGGGGGCTGTGTGGGATTAACCTGAGGTAGGCCGAG
GCCGTCACATTGCAGGAGCAAGGGGAGGAGGTCGACAGGCAAGCAAAACT
GTGCCTTGCAGGCCACGTTGCGTCCATCTCGCCTCCGATCGAAGTACAAT
GCAACCCTCGCACTGGCTTGGGTCCTGGTGGTCCTCGTATAGTTTTGGGC
ATGTGCTCTCATCTATGCATGCATGCCATGCGTATGTACGTACGTGTGTC
TCAAGTATCAGCAAGACCGCCGTGCTGATGCCAAAAGCACCTGACCTCGC
CTCCTATAGAATATAGCTGCTTTGCCTATATATATATAACCGTTTCCCCC
TGTCTCACCCACCCAACCCTCTCTCGTTCAGGCCACACCCTTCCTGTCGT
CCACCTACGACTGTCTAACTATCATTTTCTAGAGACAGTGAAGGAGATAA
TCGCAGGCTGTATCATCATCGGAGGCAACACGAACGCCAGCCAGCATTAG
CACTAGCACCAGCACCAGCACCAGTCCACACAATTAAAAAAAATGGCCTC
CACTTCGCTCCGGCGACGCCTTCCCACCCTCCTCTCATCTTCTGTAGCTT
CCTCCTCCTCCTCCTCCTTCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCC
CTTCTTCTCCGTCACACCCCACCCAGCTCCCTTGCTCTTCCCTTTGCCGC
CGCTGCCGCTGCTGCGCGTAGTGGTGCTGTGGCAGCATTTACCACCACCT
TGCCACGCAGAGGGTTGGAGGAGTTCTTTGACCAGACAAGAGCACCGCAT
GAGCCCGTTCAGgtaggtcgttggtgagagggagggagggatgagagaaa
ggcgtacgacattgccacgccgagtactgccgatatctcatttgaagaag
cgcacgctagtgagcagtcaggaaacgtgataaagggatagcaggaagtg
caagccatgtttggaagtggccagatgagtcggatcgagggggggggatg
acttttcctcttccccctccttccacgcacccttcccttccttccattct
ttcttcccttcattccatccctctctgagatgagcacactcttagtcgtg
gactaaacttcgattttttttcccggctttaaatgcttaagtactcccac
ttgttgctccctctttccctcccctccttcccctcccgcgctatagGTCG
GCCGTGCCTGGACTGCAGACGAGTTGAGACGCAAATCCTTCTCAGATCTG
CACAAGCTGTGGTATGTCCTATACAAGGAGCGAAACGTGTTGCTGACCGA
GGAGGCGTCTTGTAAGAGGAATCGAGTCACCTTGCCTAGTCCCCACCGGA
AGACCCTCGTGAGGAAGAGCATGGCAAGGATCAAGCTGGTGCTGAAGGAG
CGGCAGTTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACA
AGAAGAGCAAGGTCAGCAGCTGGAGCAGCAGAGAGAGCAGCAATAAGAGG
GTAGGGGGAGGCGGGGAGTGCATGGAATGGGAAGCGGAGGGGAGGAGAAG
GGCCGAGAGAGTTAGGTGGTAAATTGTGCACGAGAAGGAAAAAGGGACGA
GACGTCTCTTACATACAGAGGTCGTAATAGAAGGAAGGAGGAAGGATGGG
GTGGAGGCAAAAGAAAATATTACTCAGCGGTATTGAGAG
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protein sequence of NO22G01910.1

>NO22G01910.1-protein ID=NO22G01910.1-protein|Name=NO22G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MASTSLRRRLPTLLSSSVASSSSSSFSSSSSSSSSSLLLRHTPPSSLALP
FAAAAAAARSGAVAAFTTTLPRRGLEEFFDQTRAPHEPVQVGRAWTADEL
RRKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMA
RIKLVLKERQLQQQQQQQQQQQQQQEEQGQQLEQQREQQ*
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Synonyms
Publications