NO22G01880, NO22G01880 (gene) Nannochloropsis oceanica

Overview
NameNO22G01880
Unique NameNO22G01880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length900
Alignment locationchr22:566490..567389 -

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Properties
Property NameValue
DescriptionProteasome subunit beta type-2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:566490..567389 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR035206Proteasome_beta2
IPR001353Proteasome_sua/b
Homology
BLAST of NO22G01880 vs. NCBI_GenBank
Match: EWM20402.1 (proteasome subunit beta type-2 [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 1.700e-62
Identity = 136/215 (63.26%), Postives = 154/215 (71.63%), Query Frame = 0
Query:   20 PFLLLFLLP---HATLGQLDTLLGLQGRDFVLLAADPVLSRSLLLLHTHHDKLPPLGPHHCLALGGPAYFTEIMSEVLGAEKRLFEKRLRRPLTTMAVANMARNLFLEYEGLPVRVMVAGWEDEGGKEDQDLSRSHAAENE--------EAGREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEATAFLMAFLDQQYHQLEVEGGKGGG 224
            P+LLL  L       + QLDTL+GLQG DFVLLAADPVLSRSL LLH+HHDKLP LG HHCLALGGP YFTEI+SEVLGAEKRLFEKRLRRPL+T AVA MARNLFLEY+GLPVR++VAGWE+ G      +        E          GR   + +    ++ GRP L+WLDSLGA+  LPYAAHGEA+ FL   LDQQYHQLE E GK GG
Sbjct:   41 PWLLLLTLALHLPFLVAQLDTLIGLQGEDFVLLAADPVLSRSLTLLHSHHDKLPLLGSHHCLALGGPVYFTEIISEVLGAEKRLFEKRLRRPLSTRAVAAMARNLFLEYKGLPVRMLVAGWEEVGTGTGAMMEEEGGPTWEXXXXXXXXXXGRNGAEGKREGRQKMGRPSLYWLDSLGALQKLPYAAHGEASVFLTGLLDQQYHQLEDEEGKRGG 255          
BLAST of NO22G01880 vs. NCBI_GenBank
Match: CBN79826.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11
Identity = 57/179 (31.84%), Postives = 82/179 (45.81%), Query Frame = 0
Query:   35 LDTLLGLQGRDFVLLAADPVLSRSLLLLHTHHDKLPPLGPHHCLALGGPAYFTEIMSEVLGAEKRLFEKRLRRPLTTMAVANMARNLFLE--YEGLPVRVMVAGWEDEGGKEDQDLSRSHAAENEEAGREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEATAFLMAFLDQQY 212
            +DTLLG+ G  FV+LAAD  ++RS+LL   + DK+  L  +  LA  GP       +E +     L+E      LTT A A   R    +   +G     ++ G  D+                    REAG+DE           LFWLD LG +  +PY AHG   AF ++ +D++Y
Sbjct:    1 MDTLLGIAGEGFVVLAADAQVARSILLYKNNMDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDK--------------------REAGKDEAS---------LFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREY 150          
BLAST of NO22G01880 vs. NCBI_GenBank
Match: XP_005855244.1 (proteasome component c11, partial [Nannochloropsis gaditana CCMP526] >EKU21116.1 proteasome component c11, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 79.0 bits (193), Expect = 2.400e-11
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 0
Query:  160 GREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEATAFLMAFLDQQYHQLEVEGGKGGG 224
            GR   + +    ++ GRP L+WLDSLGA+  LPYAAHGEA+ FL   LDQQYHQLE E GK GG
Sbjct:   34 GRNGAEGKREGRQKMGRPSLYWLDSLGALQKLPYAAHGEASVFLTGLLDQQYHQLEDEEGKRGG 97          
BLAST of NO22G01880 vs. NCBI_GenBank
Match: XP_009492847.1 (20S proteasome subunit beta 4 [Fonticula alba] >KCV73146.1 20S proteasome subunit beta 4 [Fonticula alba])

HSP 1 Score: 77.4 bits (189), Expect = 6.900e-11
Identity = 51/181 (28.18%), Postives = 80/181 (44.20%), Query Frame = 0
Query:   35 LDTLLGLQGRDFVLLAADPVLSRSLLLLHTHHDKLPPLGPHHCLALGGPAYFTEIMSEVLGAEKRLFEKRLRRPLTTMAVANMARNLFLE----YEGLPVRVMVAGWEDEGGKEDQDLSRSHAAENEEAGREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEATAFLMAFLDQQY 212
            ++TL+ L G+D+VL A+D   +RS+L+   + DK   L PH  +A  G +  T   +E +    RL+  R    L+  A AN  R    E         V V++AG+++  G                                  P L+WLD LG +  +P+ AHG A+ F+++ LD  Y
Sbjct:    1 METLISLTGKDYVLTASDMTAARSILVFKVNEDKTRDLSPHITMAFCGESGDTVQFAEFIQKNIRLYAIRNNFELSPKAAANYVRTQLAESLRSRSPYAVNVLIAGFDEHEG----------------------------------PELYWLDYLGTLCKIPFGAHGFASNFVLSTLDNAY 147          
BLAST of NO22G01880 vs. NCBI_GenBank
Match: KGO76081.1 (Proteasome B-type subunit [Penicillium italicum])

HSP 1 Score: 75.5 bits (184), Expect = 2.600e-10
Identity = 66/208 (31.73%), Postives = 93/208 (44.71%), Query Frame = 0
Query:    6 SSRRRLQPLSFLLLPFLLLFLLPHATLGQLDTLLGLQGRDFVLLAADPVLSRSLLLLHTHHDKLPPLGPHHCLALGGPAYFTEIMSEVLGAEKRLFEKRLRRPLTTMAVANMARNLFLEYEGLPVRVMVAGWEDEGGKEDQDL-SRSHAAENEEAGREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEATAFLMAFLDQQYH 213
            SS     P S L++ +LL F L       ++ LLG+ G+DFV+LAA     R   +L    DK   L  H  +A  G +  T   +E + A   L+  R    L+  AVAN  R                      G+  + L SRS    N   G   G D   E     +P L+W+D L +++PLPYAAHG A  + +A LD+ +H
Sbjct:   49 SSFNHYSPSSSLII-YLLAFFLFITHTANMEVLLGIAGKDFVILAASKAAMRGPTVLKAEDDKTRQLNKHTLMAFSGESGDTVQFAEYIQANAALYSMRNDTELSPSAVANFVR----------------------GELARSLRSRSPYTVNLLLG---GIDPVTE-----KPHLYWVDYLASLAPLPYAAHGYAQYYCLAILDKHHH 225          
BLAST of NO22G01880 vs. NCBI_GenBank
Match: CBJ29372.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 74.7 bits (182), Expect = 4.500e-10
Identity = 57/204 (27.94%), Postives = 91/204 (44.61%), Query Frame = 0
Query:   17 LLLPFLLLF--LLPHATLGQLDTLLGLQGRDFVLLAADPVLSRSLLLLHTHHDKLPPLGPHHCLALGGPAYFTEIMSEVLGAEKRLFEKRLRRPLTTMAVA-----NMARNLFLEYEGLPVRVMVAGWEDEGGKEDQDLSRSHAAENEEAGREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEATAFLMAFLDQQYHQ 214
            +LL   LLF  L+       ++TL+G++GRDFVLL  D    RS++++ T + K+  L  +  +A  G     E+  E L    +L +    RP+    +A     N+A  L  +  G  V  ++ GW                  NE A                +P LFWLD+LGA+  + + AHG A+ F ++ LD  + +
Sbjct:    8 ILLQLALLFSSLISAVWASDMNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNAQLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVTALLGGW------------------NEVA---------------WQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFRE 178          
BLAST of NO22G01880 vs. NCBI_GenBank
Match: CZS99698.1 (probable multicatalytic endopeptidase complex chain PRE1 [Rhynchosporium commune])

HSP 1 Score: 74.3 bits (181), Expect = 5.800e-10
Identity = 61/200 (30.50%), Postives = 85/200 (42.50%), Query Frame = 0
Query:   21 FLLLFLLPHATLGQLDTLLGLQGRDFVLLAADPVLSRSLLLLHTHHDKLPPLGPHHCLALGGPAYFTEIMSEVLGAEKRLFEKRLRRPLTTMAVANMARNLFLEYEGLPVRVMVAGWEDEGGKEDQDLSRSHAAENEEAGREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEATAFLMAFLDQQYH-QLEVEGG 220
            +L L L  H    +++ LLG+ G+DF L+A      R   +L    DK  PL  H  +A  G A  T   +E + A  +L+  R    L+  AVAN  R                     G       SR     N   G        G    + RP L+WLD L +++PLPYAAHG A  +  + LD+ +H  +E E G
Sbjct:   11 YLRLQLNNHNNAIKMEVLLGITGKDFTLIACSKAAMRGATVLKASDDKTRPLNKHTLMAFSGEAGDTIQFAEYIQANAQLYSMRNGIDLSPSAVANFVR---------------------GELASSLRSRKPYNVNLLLG--------GVDPITSRPSLYWLDYLASLAPLPYAAHGYAQYYCSSILDKHHHPDIEYEAG 181          
BLAST of NO22G01880 vs. NCBI_GenBank
Match: OQO09045.1 (putative proteasome subunit beta type-4 [Rachicladosporium antarcticum])

HSP 1 Score: 74.3 bits (181), Expect = 5.800e-10
Identity = 52/185 (28.11%), Postives = 84/185 (45.41%), Query Frame = 0
Query:   28 PHATLGQLDTLLGLQGRDFVLLAADPVLSRSLLLLHTHHDKLPPLGPHHCLALGGPAYFTEIMSEVLGAEKRLFEKRLRRPLTTMAVANMARNLFLEYEGLPVRVMVAGWEDEGGKEDQDLSRSHAAENEEAGREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEATAFLMAFLDQQYH 213
            PH T    + LLG+ G+DF ++AA     R   +L T+ DK   L  H  +AL G A  T   +E + A  +L+ KR    L+    ++  R                           +L++S  + N           + E++   +P+LFW+D L + +PLPYAAHG A  + ++ LD+ +H
Sbjct:   16 PHNTAKMGEVLLGITGKDFTIIAASKAAMRGASILKTNDDKTKTLNKHTLMALVGEAGDTIQFAEYVQANIQLYSKRNASELSPSETSSFIRT--------------------------ELAKSLRSRNPYTVNLLLGGFDAETQ---KPQLFWIDYLASCAPLPYAAHGYAQYYCLSILDKHHH 171          
BLAST of NO22G01880 vs. NCBI_GenBank
Match: OQO26090.1 (putative proteasome subunit beta type-4 [Rachicladosporium sp. CCFEE 5018])

HSP 1 Score: 74.3 bits (181), Expect = 5.800e-10
Identity = 52/185 (28.11%), Postives = 84/185 (45.41%), Query Frame = 0
Query:   28 PHATLGQLDTLLGLQGRDFVLLAADPVLSRSLLLLHTHHDKLPPLGPHHCLALGGPAYFTEIMSEVLGAEKRLFEKRLRRPLTTMAVANMARNLFLEYEGLPVRVMVAGWEDEGGKEDQDLSRSHAAENEEAGREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEATAFLMAFLDQQYH 213
            PH T    + LLG+ G+DF ++AA     R   +L T+ DK   L  H  +AL G A  T   +E + A  +L+ KR    L+    ++  R                           +L++S  + N           + E++   +P+LFW+D L + +PLPYAAHG A  + ++ LD+ +H
Sbjct:   16 PHNTAKMGEVLLGITGKDFTIIAASKAAMRGASILKTNDDKTKTLNKHTLMALVGEAGDTIQFAEYVQANIQLYSKRNASELSPSETSSFIRT--------------------------ELAKSLRSRNPYTVNLLLGGFDAETQ---KPQLFWIDYLASCAPLPYAAHGYAQYYCLSILDKHHH 171          
BLAST of NO22G01880 vs. NCBI_GenBank
Match: CZT49608.1 (probable multicatalytic endopeptidase complex chain PRE1 [Rhynchosporium secalis])

HSP 1 Score: 73.6 bits (179), Expect = 9.900e-10
Identity = 58/186 (31.18%), Postives = 82/186 (44.09%), Query Frame = 0
Query:   35 LDTLLGLQGRDFVLLAADPVLSRSLLLLHTHHDKLPPLGPHHCLALGGPAYFTEIMSEVLGAEKRLFEKRLRRPLTTMAVANMARNLFLEYEGLPVRVMVAGWEDEGGKEDQDLSRSHAAENEEAGREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEATAFLMAFLDQQYH-QLEVEGG 220
            ++ LLG+ G+DF L+A      R   +L    DK  PL  H  +A  G A  T   +E + A  +L+  R    L+  AVAN             VR  +A             SR     N   G        G    + RP L+WLD L +++PLPYAAHG A  + ++ LD+ +H  +E E G
Sbjct:   44 MEVLLGITGKDFTLIACSKAAMRGATVLKASDDKTRPLNKHTLMAFSGEAGDTIQFAEYIQANAQLYSMRNGIDLSPSAVANF------------VRAELA---------SSLRSRKPYNVNLLLG--------GVDPITSRPSLYWLDYLASLAPLPYAAHGYAQYYCLSILDKHHHPDIEYEAG 200          
The following BLAST results are available for this feature:
BLAST of NO22G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20402.11.700e-6263.26proteasome subunit beta type-2 [Nannochloropsis ga... [more]
CBN79826.11.100e-1131.84conserved unknown protein [Ectocarpus siliculosus][more]
XP_005855244.12.400e-1159.38proteasome component c11, partial [Nannochloropsis... [more]
XP_009492847.16.900e-1128.1820S proteasome subunit beta 4 [Fonticula alba] >KC... [more]
KGO76081.12.600e-1031.73Proteasome B-type subunit [Penicillium italicum][more]
CBJ29372.14.500e-1027.94conserved unknown protein [Ectocarpus siliculosus][more]
CZS99698.15.800e-1030.50probable multicatalytic endopeptidase complex chai... [more]
OQO09045.15.800e-1028.11putative proteasome subunit beta type-4 [Rachiclad... [more]
OQO26090.15.800e-1028.11putative proteasome subunit beta type-4 [Rachiclad... [more]
CZT49608.19.900e-1031.18probable multicatalytic endopeptidase complex chai... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01880.1NO22G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650573gene_7203Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01880.1NO22G01880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01880 ID=NO22G01880|Name=NO22G01880|organism=Nannochloropsis oceanica|type=gene|length=900bp
ATGGCACCTTCTCATTCCTCAAGAAGAAGACTCCAACCCCTCTCCTTCCT
CCTTCTCCCGTTCCTCCTCCTCTTCCTGCTCCCTCACGCTACCCTTGGAC
AACTCGACACCCTCCTGGGTCTGCAAGGCCGGGACTTTGTACTCCTCGCT
GCTGACCCCGTCCTGAGTCGATCGCTTCTCCTCCTCCACACCCATCACGA
CAAGCTCCCTCCCCTCGGGCCGCACCACTGCCTGGCCTTGGGAGGGCCTG
CGTACTTCACGGAGATAATGAGTGAAGTCCTAGGGGCAGAAAAAAGACTT
TTTGAAAAGAGATTGCGACGGCCCCTCACAACTATGGCAGTGGCCAACAT
GGCGAGgtaacgcttcggtcgtccacccccttccctcctccctcgctccc
gacatccctgaaagatgtgccatgatttcgtacacagctcgaacgatttc
gtcacgttcgacttttctcaccctcctccctgcttctctctctccctccc
tctcactacttttagGAATTTGTTTCTAGAATACGAAGGACTGCCGGTCC
GTGTGATGGTGGCGGGATGGGAAGACGAGGGAGGGAAGGAGGACCAGGAC
CTAAGTCGTTCACATGCCGCAGAAAATGAGGAGGCTGGAAGGGAGGCAGG
GCAGGACGAAGAGGGAGAAAGTAGACGAAGTGGAAGACCCCGTCTGTTTT
GGCTTGACTCCCTAGGCGCAGTCTCGCCGTTGCCCTATGCCGCCCACGGG
GAAGCGACTGCTTTCCTCATGGCCTTTCTGGACCAGCAGTATCACCAGTT
GGAGGTGGAGGGAGGGAAGGGGGGGGGCCTGAGGGAGGGAAGAAAGGAGG
GGGTGGAAAAAGGAGGAGGAGACTGCCGTCGTTGGAGGAGGCAGTGGTGA
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protein sequence of NO22G01880.1

>NO22G01880.1-protein ID=NO22G01880.1-protein|Name=NO22G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MAPSHSSRRRLQPLSFLLLPFLLLFLLPHATLGQLDTLLGLQGRDFVLLA
ADPVLSRSLLLLHTHHDKLPPLGPHHCLALGGPAYFTEIMSEVLGAEKRL
FEKRLRRPLTTMAVANMARNLFLEYEGLPVRVMVAGWEDEGGKEDQDLSR
SHAAENEEAGREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEAT
AFLMAFLDQQYHQLEVEGGKGGGLREGRKEGVEKGGGDCRRWRRQW*
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Synonyms
Publications