NO22G01830, NO22G01830 (gene) Nannochloropsis oceanica

Overview
NameNO22G01830
Unique NameNO22G01830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2250
Alignment locationchr22:550677..552926 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:550677..552926 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027421DNA_pol_X_lyase_dom
IPR010996DNA_pol_b-like_N
Homology
The following BLAST results are available for this feature:
BLAST of NO22G01830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01830.1NO22G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO22G01830.2NO22G01830.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01830.1NO22G01830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO22G01830.2NO22G01830.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01830 ID=NO22G01830|Name=NO22G01830|organism=Nannochloropsis oceanica|type=gene|length=2250bp
CTCGTCTTCCCTATTCTTCATCCCTCCTCCCCATCCTCTCACCCACCTCT
TAGACTCTCTCTCCAACCAAGCCTCTCCTACACACAACGAGTATGGCCAT
GTCTAAGGAGCAGCTGCAGGCTTCCTCCACAGCTTTGCTCACGCGGGCCG
AGGAGGCAGGGTTAACTTTACCAGgtatgtggctattagggagaagaggg
aagagaagagggaaggatgagaaggaagggggcaacaccatggcgctgtg
gggttgaatagaaattaagtcatgagaacaagagtgtaaataatattggg
gaaggtagcttcaaaggatgcaggagggaagggaaatttgatgtgcagac
gcaaaaaaggccaaggcagcgttccaacgaggaaggagggcacgtacccc
ccccctcttcactccctcatcaccttttttcgctccctcttctctttcct
tctccccttcacaaaagGCAAGAGCGCCGTGGAACACCGCGTGAATGTGG
GTCAACTGCTCTTGCAGTGTCGTAATGCGGATGGTTCCTATGATGTCGAG
AAGGCCTGGGAAATGATGCAATCGAAGTTTAAGCCTAAGGTTGCAGAGCC
CTTAGCGAAGAAGGAAAAAGGGGTGAAGAAGAAGGAGGAGGAAGTAGGGA
AGGAGGATGAACAGGAACAGCCAGCGAAAAAGAAAGCGAAGAAAGCGGCG
CCGGCCGAGACGAAGAAGGAGAAGAAAGTGGCGCAAAAGAAGAAGAGGAG
CAAGGAAGGGGAGGAGGATGACGAGGACGAGGAGGAGGAGAGCGACGAGG
AGGACGAGGAAGGGGGAAGGAAGAAGAAGAAAGGCAAGGGTAAGCCCAAG
TCCAAGAGGGCAGCTGCTCCCAAGCCGAAGgtaagccatccctccttccc
tcatgttccccctccccttcctccttccctccctcccatatgtcgaggtc
tccccccccctactcctttctcctctttgtcgtccctgcaaattctcaca
ccaccgaccccctctctctctcccccccccctctctccccccccctctct
ccctccctccctccctctctccctctcctacagCCCGCTGCGAAAAAGGC
AGTCAAGTCGGAGGGCGGGAACGAGGAGGCGGGAGATGAGGAAGAGGACG
AGGATAAGAAGAAGAACAAAAAAGAAAAGATTGTGTTGCATTGCGACGAG
AACGAGGAGCTAGCAAAGTGCTTTCTGGAGCTGgtggggagggagggaag
gaaggagggagggagagggggaccatacgcacattgaaaaaaatgttcct
tatcttcctcctttcctccctctttcgctcactcccccctccctcctttc
taagGGCCGAGGATACTACAAACAGAAGGACTCGATGCGGGGCGCCGCCT
ACATGAAAGCTTATAAAGCCCTTATGGAGTGTGATgtaagtctccctctc
cctctctctttccctccttccctccctccctctcctacttaatgtcaatg
tgttatccaaaccaatcgtcccattctcttcgttctcattcactcccctc
cctccctccctccctccctccctccctccctccctccctccctccctccc
tccctccctccctccctcccttcctccctccctccctccctccctccctc
cctccctccctcccctcccctccctccctccctccctccctcccttcctc
cctccctccctccctcccttcttccctccctccctccctcccttcttccc
tccctccctccccagGAGCCCATCACCAGTGGAAAGCAAGCTCAGAATCT
GAACGGGGTGGGAAAAAGCAGCGCCAATAAGGTCCAGgtatggccacgag
gagggagggagggagggagggagggagggagggagggagggcgcctgcat
ttccctctcctcttcaacgccgtcacgcaatctccccatttcttcctttc
tccctccttccctccctccctctctctctctcttccttcctcccttcctt
ccctcccatcggattcccttcctccgtcctttgacctacctgctcccttc
gtccccgccctctccccctccctctctccctccctccctccctcctcggt
taatgcattgtagGAGTTCTTGGAATGGGGGAAAATTGCCACGCTGGAGG
AAATGAAGGCGGAGGCGGAGGCTGTCATGTAGGGGGGAAGGGAGGGAGGG
AGGGGGGAGGGAATGGTCATGATGACGAGAGAAGCAAGAATGAAAGGCGA
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protein sequence of NO22G01830.1

>NO22G01830.1-protein ID=NO22G01830.1-protein|Name=NO22G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MAMSKEQLQASSTALLTRAEEAGLTLPGKSAVEHRVNVGQLLLQCRNADG
SYDVEKAWEMMQSKFKPKVAEPLAKKEKGVKKKEEEVGKEDEQEQPAKKK
AKKAAPAETKKEKKVAQKKKRSKEGEEDDEDEEEESDEEDEEGGRKKKKG
KGKPKSKRAAAPKPKPAAKKAVKSEGGNEEAGDEEEDEDKKKNKKEKIVL
HCDENEELAKCFLELGRGYYKQKDSMRGAAYMKAYKALMECDEPITSGKQ
AQNLNGVGKSSANKVQEFLEWGKIATLEEMKAEAEAVM*
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protein sequence of NO22G01830.2

>NO22G01830.2-protein ID=NO22G01830.2-protein|Name=NO22G01830.2|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MAMSKEQLQASSTALLTRAEEAGLTLPGKSAVEHRVNVGQLLLQCRNADG
SYDVEKAWEMMQSKFKPKVAEPLAKKEKGVKKKEEEVGKEDEQEQPAKKK
AKKAAPAETKKEKKVAQKKKRSKEGEEDDEDEEEESDEEDEEGGRKKKKG
KGKPKSKRAAAPKPKPAAKKAVKSEGGNEEAGDEEEDEDKKKNKKEKIVL
HCDENEELAKCFLELVGREGRKEGGRGGPYAH*
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Synonyms
Publications