NO22G01770, NO22G01770 (gene) Nannochloropsis oceanica

Overview
NameNO22G01770
Unique NameNO22G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2024
Alignment locationchr22:515210..517233 -

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger, RING-type, conserved site
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:515210..517233 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO22G01770 vs. NCBI_GenBank
Match: EWM21520.1 (Zinc finger, RING-type, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 79.7 bits (195), Expect = 2.400e-11
Identity = 60/167 (35.93%), Postives = 79/167 (47.31%), Query Frame = 0
Query:  246 SVPAIAIPTPDYILYNGKGPLLVNGEGEREDDAVLLKLQ-EDIATADKEEGGNXXXXXXXXXXXXXXXXXXXXXXXXILSGTDVAQEKSEGVSW----------------TYLSSVGSFFLIGGCLVALAYHYSRR-RGSQARAALNAQPQFNMTSPRITFASATQS 395
            ++P I IP PDYIL  GKGP LV   G+  D+  ++KLQ E  A++ K+  G                            G D  +   +G +                 + L+++ +FFL GG L+ LAYH SRR R S    AL+ QPQ NM SPRITFAS  QS
Sbjct:  262 NLPPIVIPVPDYILNTGKGP-LVTDRGDINDENRVVKLQGESAASSIKQREGEDRQKTIQQERKIKDADDEEMDDQ---EGWDEVESDMDGSAGEKLVSADSAITNEGRISKLANISAFFLFGGLLLILAYHLSRRFRPSPDVTALDTQPQLNMASPRITFASVAQS 424          
The following BLAST results are available for this feature:
BLAST of NO22G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21520.12.400e-1135.93Zinc finger, RING-type, conserved site [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01770.1NO22G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01770.1NO22G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01770 ID=NO22G01770|Name=NO22G01770|organism=Nannochloropsis oceanica|type=gene|length=2024bp
AACGACAGGCAATCCCCCTTCAGTCGAGCTCAAAGAGCAATCGCTCAGGG
ACGTCATGGTCCTGCCACCATCCTCCTCCTCCTGCTCCTTTTCCTCGTCC
CCCTCCTCCTTTTCCCATGCGCGTCGTCCCCGTCTTCTTTGCCTGGTCAA
GTTCATCATCCTCCTCTTACTTGTCGCCTGCATTTCGACCGCCGATGCCC
ACGCTCAAGTATCCCAGGGACAGCAACGACATGCCCTCACGAGCAAGAAG
AATAAAGCGACCCGAGTACAGGGGCGATCCTATGAGCCACGCCACAGGGT
CCTGCACCGACGCTACCGCAAGGAGCTACAGGCACAACAACAACAACAAC
AACAACGACAAGGAGGAGGAGGACACGTTAATTTGGATTTGGGAGGCGTC
GTGGAAGAGCGGGCCGTCCTAAGCGAGCCTGAGCCCCTGACGGACGATCT
TTTCCCTACCCCCCCTCCCCCTGGAGACGAAGGGGACGAATTCGTGGAGG
AAGATAATGTAGAGAAAGCATCCGCTCCTATTCTTGCTGGGTCAATGGGG
AGTGACAGGGCCATGAAGGAGGAGGAAGAGGAGGAGGATGACTCTGTCAA
GCCTGATGACGACGACGCGTCTCTCGACGGGCCAATGCCCGAGCCCTTGC
CGCAGGACGAAGAACATGAAGACGGAAGAAAAGTTAGAGAAGATCGTGCT
TTTTCGGACAGGGAGATTAAAGAAGAAAAGCCATTTCTGTCCGAAACCAG
CGACGGTAGCAACAATAGCAGCAGGAGCAGCAGCAACATTAGCGTTCCTG
CCATCGCTATTCCAACGCCTGATTACATCCTCTATAATGGAAAAGGTCCC
TTGTTAGTGAATGGGGAGGGAGAAAGAGAAGATGACGCGGTCCTACTTAA
GCTACAGGAGGACATTGCTACCGCAGATAAGGAGGAGGGAGGGAATGGTA
CGGATGCCCGGGACGCCAACGATCACGGTGATCCCAACGACAGTAGCAGC
AGCAGCGACGGCATTGATATTCTCTCCGGCACCGACGTTGCCCAAGAAAA
AAGTGAGGGTGTCAGTTGGACATACCTGAGCAGTGTCGGATCCTTCTTCC
TGATTGGTGGGTGTTTGGTGGCGCTCGCCTACCACTACTCACGTCGCAGG
GGCTCACAGGCCAGAGCCGCACTTAATGCTCAGCCTCAATTTAACATGAC
CTCCCCTCGGATTACCTTCGCCTCCGCCACACAATCACCGGAAGAAAGAG
AAGGGGGAGGGGGGGGGGAGGAGGAGGAGGAGGGACGCCACCTCAGTTTC
ACTTGGAGCCCACGTACCTGAAGGGTGGTCGGGGAAGGATGAGACCGTCC
TCCCCCTCGTCCTTGCCGCCGTCAGGGTCGTGCACGTCTGTCTCCCCATC
TTTTCACCATGGGCGGCGAGGGAGTAGCACAAATCCTCTGCAGCTGCAGC
ATTTAAACCATCATAATTTAGCACAAGGTCCTCCCTCCTCCTCCTCCTCT
TCCTCGTCTTCCTCCTCTTCCTTGGAGGAGGCAGGCAGTGGGGAAGAGGG
AGCAGCAAGGGTGCGAGGGATGAGTATCTATCGCGAAGCCCCATGTTCAG
CGTGTGGATTAAACCTTCGGACGCATGCTCTCGTGCCGTGTTCACATCTG
GTGTGTGAGTCGTGTGCATCGACAGCCTCATTTTGTGCGACGTGCAAGAG
CGCTGTGGTGAGTAAAAATTGGGTCATGAGTCCGTCGCGTTAGGGCAGAA
AGAGGGGGAAGGAACAAGGAAATTCAGAGACATATTTTTGTCTTTCTTGA
TTAGATAAATGAGTGACGGTAAGGTGAAAGGGTTACAAGTTATGCTTGAG
TGTGAAAAGAATGGGTGATGGGCCGAGGTGGGGGAAAGCGTGTCCATGTG
CATATAGATGACAAAAACAAGGAGAAAATTGAACACCCTGAGAAAGAGGA
AATGCAGCACAACAACAAGGACTAGCTACAGTAGCCGAACAGGAAAAATG
GAAAGACGTGTTTTGTTTGGAAAA
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protein sequence of NO22G01770.1

>NO22G01770.1-protein ID=NO22G01770.1-protein|Name=NO22G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MVLPPSSSSCSFSSSPSSFSHARRPRLLCLVKFIILLLLVACISTADAHA
QVSQGQQRHALTSKKNKATRVQGRSYEPRHRVLHRRYRKELQAQQQQQQQ
RQGGGGHVNLDLGGVVEERAVLSEPEPLTDDLFPTPPPPGDEGDEFVEED
NVEKASAPILAGSMGSDRAMKEEEEEEDDSVKPDDDDASLDGPMPEPLPQ
DEEHEDGRKVREDRAFSDREIKEEKPFLSETSDGSNNSSRSSSNISVPAI
AIPTPDYILYNGKGPLLVNGEGEREDDAVLLKLQEDIATADKEEGGNGTD
ARDANDHGDPNDSSSSSDGIDILSGTDVAQEKSEGVSWTYLSSVGSFFLI
GGCLVALAYHYSRRRGSQARAALNAQPQFNMTSPRITFASATQSPEEREG
GGGGEEEEEGRHLSFTWSPRT*
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Synonyms
Publications