NO22G01700, NO22G01700 (gene) Nannochloropsis oceanica

Overview
NameNO22G01700
Unique NameNO22G01700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3809
Alignment locationchr22:490583..494391 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:490583..494391 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027370Znf-RING_LisH
IPR001841Znf_RING
Homology
The following BLAST results are available for this feature:
BLAST of NO22G01700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01700.1NO22G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|105888gene_7180Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01700.1NO22G01700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01700 ID=NO22G01700|Name=NO22G01700|organism=Nannochloropsis oceanica|type=gene|length=3809bp
GCAGCAGCAGCAGCAGCAGCAGCATCAGTAGCAGTTGATTCACTCCTCCC
TATTCTTTCCAGGAGGCTAGTACCATCATCCAAGTCACTATAGAGCATTG
CCTCTTCCCCATCATGCTGGTCGTCGTTACCTCGCTGATTCTGCTGTTGC
TCGTGGTGGGAATGGTGTTGGTGCGGGTAGATGGGAAGGGCCATGATTGT
TTCATAGGGAGGTATTATGGTTAGCGTCAGACGTTTCACATGTAGCAATT
GATCGCCGCTGCTGCTGCTGCTGCTACTACTACTACTGCTGCTATTACTA
CTACAACTCGACTGCCGTCGATGCAAAATAGAGGACGGTAGGGAGAAAGG
AGCGCTCAAGCCCCCCTTAGCCAGCACTGGACGAGTAGGAGGAAAAAGAG
TAAGACGCTTCTTGTCGTTCTTGCCCTCGTCATAAACAACCCTTGCCTCT
TCTTCCCTCCCGGCACCCGTCGGGCCCTCTTCGAATACAAAGTGCATATC
CTTCGTGCTATTTCGATGAAATTGCCTCGTCTTCCCCCCCTCGTCCTCTC
TCCCTTCCTCTTCCTCCACCACAATCACCTGATTCTTCCTCCCTTCCTTG
TCCTTCTCCCTCCACCTCGATAGCTTTTCCACCACCACCACCACCACTAA
AGGGAGCATTCCGACACACCCAAAAAAATTGAATGAGGCTGTGATGCCAG
AGATTCCGAGAACTAACGAAGACAATATAGCACCAATCCCAAAGGAAAAA
TGCAAGCCTTGCAACCACGGACCAGCCTTGGAGCCCCATGTTTCGAGTAA
AATGATATTACCCAGGGTGGAGATGATGGATAAGCCGTTCCCTTGGAGAA
AGCAGAGGAAGAGTAAGCCGAGCATGCTGGTGCTATGCGGCATGGCCACG
TTTATAATCGAGGCTACTAGACCCGAACACGCCATGATCATCACCTTGCT
TGGACGCACCCCATCTTCCCTTAATCGAGAAACAAACAAAGAACCCGTGA
TGTATCCTCCTGCACGGACAGTAAACGCCCAGCCTAAGGACGTATTGGGC
ATGGCCAAATGCTTGGCAATAGCTGGGATGGCTGGTCCTAGCAGACCTTG
TAGTCCCCCCATGGAGACCCAGCTGAGACAAGCGATGACGCTGACAACGA
CTTTCTTGCTAGCATTTAGGTGTTTGTGGGACGTGTCCAGGCCGGTGGCG
GGATTGTCTACGACCACGAGGGGTGGGGGGAGGATATGCGCCGTCTCCTC
GTCGGCCTCGCTATCATCTTCACCAGGGCGGCAGCAGGCAATCATCTTTC
CTATTTGCTTTTACTTAAGATTGGATCTGGATAGATAAAATGTTTGTGTG
AATATTTTGGAGAGGAGGGACCAGGACGAATACGTGTGTCAGAGCCACAC
AAAGCCCCGAGTAGATTGGGTCACGTGCCTCAGACCTGAGGGCTCTGGTC
AAGGGGATGTTATGTGCTACACTGTACAATGACAGCCAGCTTTGGCATGC
AATAAATAGCCTTGCCCGGGGGTGCACTTGAAAGGAACGAGTCAAGACAA
GACAAGAGGAGGGAGTGTCCATGTGTAAGTATGTCGTGTACACATACCGA
ATGTGTTAGGAAGAAGTTAGATGTGGCTGCGGCCCATTGTCGGGTGAAAA
GTCGTGCACAGTGACTGCCCTGTCGTCATAGGAGGGAGAGCAGAGTCAGT
GTAAGATGGTCTTTAATGATATATGGAAACTCAACTGAAATTTGGGCTCT
GTCCTGGGGCGCACAACCGAGTTTTTTGGGTCCCTCTGCTTTCAACGGGC
AAGCAGACGTTGTCCTCTCGGTTCTTTCTCACGCCTTGAGGTTTGGGAGG
TTTTTAAATTCGAAGACAAGGAGGAGCCTCGCTCCCTCGTATAGGTGTCC
AGTTGCAAGAGACGAAGGGTGTACATGCGTCTTCAAGGTCCTCAATGAAA
ATAATTTGACATAGTCATGTATTGTGCCTGTCATCACCTTTTCCGTGGGA
CTCTCCTCGCCCAACCAAGATTACACCGCATTGCTTTCCTTGCGCCTCCC
TCATTGTCATTACCCACCCACCCACCAGACAAGTTCTTCCTCTATCAAAA
TGAATAAGCAAGCCACGCGCCGGGGCCTGGCCCTTCTAGTCCCTGTCACC
ATGGCGGGCCAAGCAGGCCGGCAACCGCAGCCCGCACAGTCCCGCGCCGA
CCCCCAGCAACACAGCGCGGGCAACAGCACTGTCGTCTTGAACGGCAGCA
GCGGCAGCAGCAGCAACGACCGCAACAGCAACAACAATGCCACGGTCCTT
ACTGCCACGACGAAAAGTAGTACTATTCAGGCATGCGTGGATTCGCCGTC
GTCGCTGGTCCCGCGGGAGATGCCCGATGCTGTGACCCGGGTCGTCTGCG
CCTCTTTCCGATACCAACAGCAGCCAAACCAACGGCAACAACAAAGCAGC
CACCACATCGACGAAAATAATGCATTCCAATCTTCGGCCACTTCCACCCA
TAATAACAACAACAACGTACGCCAGCATGAAGGCATGATTAGCAACGCGG
CCTCGCAGCCCGAGGTCCAAACAAATGTGAATCATCGCCTTGCGCAAGAC
CCCGACTACCACAGATTCTTTTCCTCTGCCAGCGGAGATAATACTGGTCG
CGGGAGAGGACCGTCTATTTCTTGTCCTCTTTCTCATCCTCCTTACGCTC
ATGGTGGTGGTACACCTTCTCCACAGTCCCCTTTGCGTTTACTTCCTCCG
TCCGCTGTAGCTTTCCTCCATCAGGAGCACCAGCAGCATCACCATCATTA
TTCTGCATTCTCCTCTCCAAATGTTTCCCCTCTCTCCCACCGAGCCAAAT
GCTACCTCCCCCCTTCCTCTTCCTCCCCTCCCCCACTCCCATCCACCCTG
TTCCACGCCATTCCGCACAACGCGGACCGGTGCCGGAAAAATTTCGCCGC
GGCAGTCAACTGTTCTGTGTGTTTATTGCCTCTGACCGATGCGCATGTCG
TGGACTGCGGAGAGGGACACGTGTTCTGCCGGGCGTGTGTTTGGAAAGTT
CAGGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGAGGGCTGGAGCCTTGC
GTCGTGGTTATCGGCGTTTTTCTTGGGCTCAGTCAGGGTGGTTGGGGGAA
GGGGGAGAACGAGGACGAGGAGAAGTAGTGGGAGTCTATGTCCTGAGTGT
AGATGTCCATTTTCAACGTCCATTCCTGTGAGGAGGATAAATGATATAGg
tgcgtttgtgtgtgtgtgcattgcctccctctctccctctctcctccttt
ccgtccttcccttcgttcctttctacccttttatttttccctttcttcct
ctctccatctctctacccatccgctcccaccctgtgcaattagcatttga
gcacatccggatgtcgctctcgaacactcacaccccttccttcccccttc
cttctctccctccttccctccctccttccttcccttacagTCGAAAGTGT
CCGGCGGCTACTCCCGTCTCAATTCGAGGACGAAGATTTTCAAGAGCAAG
AGGAGAGGAACAGACACGCGGAGAGGGAGGGAGGGGCGGAAGGCGCGGAG
GATGCATTGCCGCCAGGAGGGAGGGAGGAGTCGATACCGGCCTGGTTCTT
CACATTTGTGTGTTTTGTGGTGGTGGTGGCGTTTGCCATTAAAAAATAGC
AAAGGAGATAGGAATGGAGTGAAGGAAATGCCTCTGGACAGAATCAAAAG
CATGTTTTAGCCAGAAAGAGGAAACGGAAGTATACTCATAAAGTCATTGA
TCTTGGCTC
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protein sequence of NO22G01700.1

>NO22G01700.1-protein ID=NO22G01700.1-protein|Name=NO22G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MNKQATRRGLALLVPVTMAGQAGRQPQPAQSRADPQQHSAGNSTVVLNGS
SGSSSNDRNSNNNATVLTATTKSSTIQACVDSPSSLVPREMPDAVTRVVC
ASFRYQQQPNQRQQQSSHHIDENNAFQSSATSTHNNNNNVRQHEGMISNA
ASQPEVQTNVNHRLAQDPDYHRFFSSASGDNTGRGRGPSISCPLSHPPYA
HGGGTPSPQSPLRLLPPSAVAFLHQEHQQHHHHYSAFSSPNVSPLSHRAK
CYLPPSSSSPPPLPSTLFHAIPHNADRCRKNFAAAVNCSVCLLPLTDAHV
VDCGEGHVFCRACVWKVQGREGGREGGGEGWSLASWLSAFFLGSVRVVGG
RGRTRTRRSSGSLCPECRCPFSTSIPVRRINDIVESVRRLLPSQFEDEDF
QEQEERNRHAEREGGAEGAEDALPPGGREESIPAWFFTFVCFVVVVAFAI
KK*
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Synonyms
Publications