NO22G01620, NO22G01620 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO22G01620 vs. NCBI_GenBank
Match: EWM21516.1 (circadian rna-binding protein chlamy 1 subunit c1 [Nannochloropsis gaditana]) HSP 1 Score: 302.0 bits (772), Expect = 4.200e-78 Identity = 182/245 (74.29%), Postives = 204/245 (83.27%), Query Frame = 0 Query: 96 QATDAGREGDADSNIAFAKTHQHTETLEVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQNVPDNEPRILTIVGKPENVANAIKMVEAVKEGGPSMLADFPEVAGNVRATVDCPRAIVGRLIGKGGDIIREIQYKSKAVIQINQKLPHEQPCKVTITGAPKAVQTAREIIIAIMEQGVQAIHLFPGGTAPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLYTIPIEGMASAIDVPKSQ 341 QAT RE A++N AFA+ +QH E ++VAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQ+VPD EPR LTIVGKPE+V NA M+E V EGGPS+LADFPEVAGN +ATVDCPR +VGRLIGKGGDI+REIQYKSKAVIQINQ LP +QPCKVTITGAPKAVQ+AREIIIAIMEQGVQA+H + G XXXXXXXXXXXXXXXXXXXXXXXXXX LY +P++ A++VPKSQ Sbjct: 97 QATTEARESSAETNAAFAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIMEQGVQALHQYSAG------------XXXXXXXXXXXXXXXXXXXXXXXXXXXLYPVPVDASTWAVEVPKSQ 329
BLAST of NO22G01620 vs. NCBI_GenBank
Match: XP_005854408.1 (far upstream binding protein [Nannochloropsis gaditana CCMP526] >EKU21950.1 far upstream binding protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 268.1 bits (684), Expect = 6.700e-68 Identity = 130/171 (76.02%), Postives = 147/171 (85.96%), Query Frame = 0 Query: 96 QATDAGREGDADSNIAFAKTHQHTETLEVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQNVPDNEPRILTIVGKPENVANAIKMVEAVKEGGPSMLADFPEVAGNVRATVDCPRAIVGRLIGKGGDIIREIQYKSKAVIQINQKLPHEQPCKVTITGAPKAVQTAREIII 267 QAT RE A++N AFA+ +QH E ++VAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQ+VPD EPR LTIVGKPE+V NA M+E V EGGPS+LADFPEVAGN +ATVDCPR +VGRLIGKGGDI+REIQYKSKAVIQINQ LP +QPCKVTITGAPKAVQ+ + + Sbjct: 97 QATTEARESSAETNAAFAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSGKTFFL 267
BLAST of NO22G01620 vs. NCBI_GenBank
Match: XP_002290579.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92331.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 124.8 bits (312), Expect = 9.200e-25 Identity = 105/311 (33.76%), Postives = 159/311 (51.13%), Query Frame = 0 Query: 120 ETLEVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQNVPDNEPRILTIVGKPENVANAIKMVEAV-KEGGPSMLADFPEVAGNVRATVDCPRAIVGRLIGKGGDIIREIQYKSKAVIQINQKLP--HEQPCKVTITGAPKAVQTAREIII-------------------------AIMEQGVQAIHLFPGGTAPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLYTIPIEGMASAIDVPKSQVGKIIGKGGEIVGLIQEKSGCRLQIAQDVPEGMPCRVAILGGREGGAAYVCEIIQAIIDRGP 403 ET +V+ VGR+IGKGGE IRD+Q RSGC+ +DQNVP+ PRI+T G + A +++ + E G A+ P + ++ V P ++G++IG+GG++IRE+Q KS A IQ++ Q ++T+TG +AV A E+I+ + G ++L G +++ XXXXXXXXXXXXX IE K +G++IG+ G + +Q++SGC +QI Q+VP GM C + I G R+ G ++IQ II+ GP Sbjct: 235 ETGQVSMLYVGRVIGKGGEMIRDLQARSGCRIDVDQNVPEGAPRIITYRGTRNAIDFAKQLISILCTEHGKE--AELP-LGQAMKKLVLVPSTVIGKIIGRGGEMIRELQSKSMAKIQVDHSGAGMDSQQRQITVTGTTQAVIKAEEMILFLAANPAVDAQESLALLIRDKTMNGGVWGSGPPYVNLPNQGQGMADTGGGMYGGGAYGAVQPAAAAXXXXXXXXXXXXXXXXXXXIE--HELYPCSKMYMGRVIGQKGVTINDLQKRSGCDIQINQNVPVGMDCEINIKGSRQ-GIEMAKQMIQEIIELGP 539
BLAST of NO22G01620 vs. NCBI_GenBank
Match: KXZ45354.1 (hypothetical protein GPECTOR_55g260 [Gonium pectorale]) HSP 1 Score: 124.0 bits (310), Expect = 1.600e-24 Identity = 83/263 (31.56%), Postives = 122/263 (46.39%), Query Frame = 0 Query: 119 TETLEVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQNVPDNEPRILTIVGKPENVANAIKMVEAVKEGGPSMLADFPEVAGNVRATVDCPRAIVGRLIGKGGDIIREIQYKSKAVIQINQKLPHEQPCKVTITGAPKAVQTAREIIIAIMEQGVQAIHLFPGGTAPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLYTIPIEGMASAIDVPKSQVGKIIGKGGEIVGLIQEKSGCRLQIAQDVPEGMPCRVAILG 382 TE + D VGR+IG+ G TIRD++ +G + +D +P +TI GK E+V A+K V+ + G A P VAG V+ T++CP IVGR+IG+GG+ IR +Q S A I +NQ P QP ++ ITG +V A ++ ++ GG S G ++ PK+ VG+IIGKGGE + +Q++ +QI Q PC+V I G Sbjct: 139 TEVVMCPPDKVGRVIGRAGATIRDLEAGTGTRIQVDHKAAGEKP--VTISGKREDVERAVKTVQDLIAGTTGTDASQP-VAGEVQKTLECPAGIVGRVIGRGGETIRSLQQASGAHILVNQDFPEGQPREIVITGTQDSVDRAHNMVTELI-----------GGANVSTQTVIQRFGV--------------------------------GSTEVLECPKAMVGRIIGKGGETIKDLQKRFSASIQIDQ---SSTPCKVTITG 352
BLAST of NO22G01620 vs. NCBI_GenBank
Match: PNW81541.1 (hypothetical protein CHLRE_06g250800v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 120.2 bits (300), Expect = 2.300e-23 Identity = 86/288 (29.86%), Postives = 130/288 (45.14%), Query Frame = 0 Query: 120 ETLEVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQNVPDNEPRILTIVGKPENVANAIKMVEAVKEGGPSMLADFPEVAGNVRATVDCPRAIVGRLIGKGGDIIREIQYKSKAVIQINQKLPHEQPCKVTITGAPKAVQTA----REIIIAIMEQGVQAIHLFPGGTAPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLYTIPIEGMASAIDVPKSQVGKIIGKGGEIVGLIQEKSGCRLQIAQDVPEGMPCRVAILGGREGGAAYVCEIIQAIIDRGPP 404 ET+ D VGR+IG+ G TIRD++ +G + +D P ++P +TI G+ + V A + V + G S A P G + T++CP+ IVGR+IG+GG+ IR +Q S A I +NQ P ++TI+G+ AV A +E+I Q + + N+ G ++ PK+ VG+IIGKGGE + +Q++ +QI Q MPC+V I G A+ I I GPP Sbjct: 2 ETIMCPPDKVGRVIGRAGATIRDLEASTGTRIQVDHKAPGDKP--VTISGRADEVERAKRQVLDLISGHGSDAAPAP---GEAQKTLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPEGAARQITISGSQDAVDRAASMVQELIGGEHANTSQVVQRVSNNSGAGNTFGV-------------------------------------GSTEVLECPKTMVGRIIGKGGETIKDLQKRFNASIQIDQ---SAMPCKVTITGPSHTIASARRAIEDLIRSTGPP 244
BLAST of NO22G01620 vs. NCBI_GenBank
Match: AAR90343.1 (circadian RNA-binding protein CHLAMY 1 subunit C1, partial [Chlamydomonas reinhardtii]) HSP 1 Score: 119.8 bits (299), Expect = 3.000e-23 Identity = 85/284 (29.93%), Postives = 129/284 (45.42%), Query Frame = 0 Query: 120 ETLEVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQNVPDNEPRILTIVGKPENVANAIKMVEAVKEGGPSMLADFPEVAGNVRATVDCPRAIVGRLIGKGGDIIREIQYKSKAVIQINQKLPHEQPCKVTITGAPKAVQTAREIIIAIMEQGVQAIHLFPGGTAPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLYTIPIEGMASAIDVPKSQVGKIIGKGGEIVGLIQEKSGCRLQIAQDVPEGMPCRVAILGGREGGAAYVCEIIQAIIDRGPP 404 ET+ D VGR+IG+ G TIRD++ +G + +D P ++P +TI G+ + V A + V + G S A P G + T++CP+ IVGR+IG+GG+ IR +Q S A I +NQ P ++TI+G+ AV A ++ ++ GG + S G ++ PK+ VG+IIGKGGE + +Q++ +QI Q MPC+V I G A+ I I GPP Sbjct: 101 ETIMCPPDKVGRVIGRAGATIRDLEASTGTRIQVDHKAPGDKP--VTISGRADEVERAKRQVLDLISGHGSDAAPAP---GEAQKTLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPEGAARQITISGSQDAVDRAASMVQELI-----------GGEHANTSQVVQRFGV--------------------------------GSTEVLECPKTMVGRIIGKGGETIKDLQKRFNASIQIDQ---SAMPCKVTITGPSHTIASARRAIEDLIRSTGPP 333
BLAST of NO22G01620 vs. NCBI_GenBank
Match: XP_001696422.1 (C1, subunit of the circadian RNA-binding protein CHLAMY 1 [Chlamydomonas reinhardtii]) HSP 1 Score: 119.8 bits (299), Expect = 3.000e-23 Identity = 85/284 (29.93%), Postives = 129/284 (45.42%), Query Frame = 0 Query: 120 ETLEVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQNVPDNEPRILTIVGKPENVANAIKMVEAVKEGGPSMLADFPEVAGNVRATVDCPRAIVGRLIGKGGDIIREIQYKSKAVIQINQKLPHEQPCKVTITGAPKAVQTAREIIIAIMEQGVQAIHLFPGGTAPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLYTIPIEGMASAIDVPKSQVGKIIGKGGEIVGLIQEKSGCRLQIAQDVPEGMPCRVAILGGREGGAAYVCEIIQAIIDRGPP 404 ET+ D VGR+IG+ G TIRD++ +G + +D P ++P +TI G+ + V A + V + G S A P G + T++CP+ IVGR+IG+GG+ IR +Q S A I +NQ P ++TI+G+ AV A ++ ++ GG + S G ++ PK+ VG+IIGKGGE + +Q++ +QI Q MPC+V I G A+ I I GPP Sbjct: 124 ETIMCPPDKVGRVIGRAGATIRDLEASTGTRIQVDHKAPGDKP--VTISGRADEVERAKRQVLDLISGHGSDAAPAP---GEAQKTLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPEGAARQITISGSQDAVDRAASMVQELI-----------GGEHANTSQVVQRFGV--------------------------------GSTEVLECPKTMVGRIIGKGGETIKDLQKRFNASIQIDQ---SAMPCKVTITGPSHTIASARRAIEDLIRSTGPP 356
BLAST of NO22G01620 vs. NCBI_GenBank
Match: PNW81540.1 (hypothetical protein CHLRE_06g250800v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 119.8 bits (299), Expect = 3.000e-23 Identity = 85/284 (29.93%), Postives = 129/284 (45.42%), Query Frame = 0 Query: 120 ETLEVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQNVPDNEPRILTIVGKPENVANAIKMVEAVKEGGPSMLADFPEVAGNVRATVDCPRAIVGRLIGKGGDIIREIQYKSKAVIQINQKLPHEQPCKVTITGAPKAVQTAREIIIAIMEQGVQAIHLFPGGTAPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLYTIPIEGMASAIDVPKSQVGKIIGKGGEIVGLIQEKSGCRLQIAQDVPEGMPCRVAILGGREGGAAYVCEIIQAIIDRGPP 404 ET+ D VGR+IG+ G TIRD++ +G + +D P ++P +TI G+ + V A + V + G S A P G + T++CP+ IVGR+IG+GG+ IR +Q S A I +NQ P ++TI+G+ AV A ++ ++ GG + S G ++ PK+ VG+IIGKGGE + +Q++ +QI Q MPC+V I G A+ I I GPP Sbjct: 2 ETIMCPPDKVGRVIGRAGATIRDLEASTGTRIQVDHKAPGDKP--VTISGRADEVERAKRQVLDLISGHGSDAAPAP---GEAQKTLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPEGAARQITISGSQDAVDRAASMVQELI-----------GGEHANTSQVVQRFGV--------------------------------GSTEVLECPKTMVGRIIGKGGETIKDLQKRFNASIQIDQ---SAMPCKVTITGPSHTIASARRAIEDLIRSTGPP 234
BLAST of NO22G01620 vs. NCBI_GenBank
Match: BBC28455.1 (C1, subunit of the circadian RNA-binding protein CHLAMY1 [Yamagishiella unicocca]) HSP 1 Score: 119.0 bits (297), Expect = 5.100e-23 Identity = 84/274 (30.66%), Postives = 125/274 (45.62%), Query Frame = 0 Query: 108 SNIAFAKTHQHTETLEVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQNVPDNEPRILTIVGKPENVANAIKMVEAVKEGGPSMLADFPEVAGNVRATVDCPRAIVGRLIGKGGDIIREIQYKSKAVIQINQKLPHEQPCKVTITGAPKAVQTAREIIIAIMEQGVQAIHLFPGGTAPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLYTIPIEGMASAIDVPKSQVGKIIGKGGEIVGLIQEKSGCRLQIAQDVPEGMPCRVAILG 382 S++ F TET+ D VGR+IG+ G TIRD++ + + +D P +P +TI GK E+V A + V + G D V G V+ ++CP+ IVGR+IG+GG+ IR +Q S A I +NQ P P ++TITG AV+ A ++ L G A + + G ++ PK+ VG+IIGKGGE + +Q++ +QI Q G PC+V I G Sbjct: 128 SSLLFLDGSTATETIMCPSDKVGRVIGRAGATIRDLEASTSTRIQVDHKAPGEKP--VTISGKREDVERAKRTVLDLISG----TGDTVPVTGEVQRMLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPDGVPRQITITGTHDAVERAISMV----------SELISGDHANTQAVIQRFGV---------------------------------GSTEVMECPKAMVGRIIGKGGETIKDLQKRFSVSIQIDQ---IGTPCKVTITG 349
BLAST of NO22G01620 vs. NCBI_GenBank
Match: BBC28431.1 (C1, subunit of the circadian RNA-binding protein CHLAMY1 [Yamagishiella unicocca]) HSP 1 Score: 117.9 bits (294), Expect = 1.100e-22 Identity = 82/276 (29.71%), Postives = 127/276 (46.01%), Query Frame = 0 Query: 106 ADSNIAFAKTHQHTETLEVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQNVPDNEPRILTIVGKPENVANAIKMVEAVKEGGPSMLADFPEVAGNVRATVDCPRAIVGRLIGKGGDIIREIQYKSKAVIQINQKLPHEQPCKVTITGAPKAVQTAREIIIAIMEQGVQAIHLFPGGTAPSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLYTIPIEGMASAIDVPKSQVGKIIGKGGEIVGLIQEKSGCRLQIAQDVPEGMPCRVAILG 382 + S++ F+ TET+ D VGR+IG+ G TIRD++ + + +D P +P +TI GK ++V A + V + G D V G V+ ++CP+ IVGR+IG+GG+ IR +Q S A I +NQ P P ++TITG +V A ++ L G A + + G ++ PK+ VG+IIGKGGE + +Q++ +QI Q+ G PC+V I G Sbjct: 130 SSSSLLFSDGATATETIMCPSDKVGRVIGRAGATIRDLEASTSTRIQVDHKAPGEKP--VTISGKRDDVERAKRTVLDLISG----TGDTVPVTGEVQKMLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPDGIPRQITITGTQDSVDRAINMV----------SELISGDHANTQAVIQRFGV---------------------------------GSTEVMECPKAMVGRIIGKGGETIKDLQKRFSVSIQIDQN---GTPCKVTITG 353 The following BLAST results are available for this feature:
BLAST of NO22G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO22G01620 ID=NO22G01620|Name=NO22G01620|organism=Nannochloropsis oceanica|type=gene|length=2541bpback to top protein sequence of NO22G01620.1 >NO22G01620.1-protein ID=NO22G01620.1-protein|Name=NO22G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=606bpback to top Synonyms
Publications
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