NO22G01520, NO22G01520 (gene) Nannochloropsis oceanica

Overview
NameNO22G01520
Unique NameNO22G01520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1720
Alignment locationchr22:447654..449373 +

Link to JBrowse

Properties
Property NameValue
DescriptionMitotic checkpoint protein PRCC
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:447654..449373 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018800PRCC
Homology
BLAST of NO22G01520 vs. NCBI_GenBank
Match: EWM21476.1 (Mitotic checkpoint protein PRCC [Nannochloropsis gaditana])

HSP 1 Score: 218.4 bits (555), Expect = 5.400e-53
Identity = 250/475 (52.63%), Postives = 280/475 (58.95%), Query Frame = 0
Query:   69 LPAHIQAALMRAVPLRRARDSSKGVTGGRFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESKAIVSRQAAGATGLFALLPKPKAEEALDLALVKSN----------KAAAERKKVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP-LHPSLMASAKAAALPRVTIVKKDVPGIS-PTMAAPAAIPTXXXXXXGAESAQFSSVHHPSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVHNVHAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDEFGQPLTGAESRRQKQRQKRELAAGNLSAVSQLAGGQVMEVAARDEAWDPFRHGPPKKKEKVSIAAMFYDTKTGETITTTEASKTHKRKHQINSLAIQAAEREADLLEGKARGMQSKAQTQGKYGW 532
            LP+HIQAALMRA PLRR+    +G   G  +SD     XXXXXXXXXXXXXXXXXXXXXXXXXXX    AESKA+  RQAAGATGLFALLPKPK E+A++ AL KS            A  E   V  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LH SLMA A AAALPRV+I  + + G++ P   APAA         GAE  Q S+    ++                                             N   + A R                                                              D+F  PL+   SRRQKQR +RELAAGNLSAVS+L GGQV+EVA R+E+WDP+R+GPPKKKEKVSIAA FYDTKTGET+TTTEAS+THKR+HQIN+LAIQAAEREADLLEGKAR MQSKAQTQGKYGW
Sbjct:   76 LPSHIQAALMRAAPLRRSTGQKEGPVTG--VSD----DXXXXXXXXXXXXXXXXXXXXXXXXXXXREQVAESKAVAKRQAAGATGLFALLPKPKVEKAMEKALKKSGXXXXXXXXXXXANMEADAVAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLLHSSLMAGATAAALPRVSI-SQGMRGLAIPAPTAPAA-------AVGAEIRQPSTSLSVAASSELPASGSTGTMGHGAATSGLGESVGSREPQAYASYGGLWQGQENERAMRAHRAELDAYYAAEASRQPPLQMSPGSCLQPHAQE-------------------------------DDFEVPLSEQGSRRQKQRLQRELAAGNLSAVSKL-GGQVVEVARREESWDPYRYGPPKKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504          
BLAST of NO22G01520 vs. NCBI_GenBank
Match: XP_005856276.1 (hypothetical protein NGA_2119710, partial [Nannochloropsis gaditana CCMP526] >EKU20092.1 hypothetical protein NGA_2119710, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 197.6 bits (501), Expect = 9.800e-47
Identity = 103/126 (81.75%), Postives = 116/126 (92.06%), Query Frame = 0
Query:  405 DEFGQPLTGAESRRQKQRQKRELAAGNLSAVSQLAGGQVMEVAARDEAWDPFRHGPPKKKEKVSIAAMFYDTKTGETITTTEASKTHKRKHQINSLAIQAAEREADLLEGKARGMQSKAQTQGKYG 531
            D+F  PL+   SRRQKQR +RELAAGNLSAVS+L GGQV+EVA R+E+WDP+R+GPPKKKEKVSIAA FYDTKTGET+TTTEAS+THKR+HQIN+LAIQAAEREADLLEGKAR MQSKAQTQGKYG
Sbjct:  120 DDFEVPLSEQGSRRQKQRLQRELAAGNLSAVSKL-GGQVVEVARREESWDPYRYGPPKKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYG 244          
BLAST of NO22G01520 vs. NCBI_GenBank
Match: XP_009036672.1 (hypothetical protein AURANDRAFT_64044 [Aureococcus anophagefferens] >EGB08682.1 hypothetical protein AURANDRAFT_64044 [Aureococcus anophagefferens])

HSP 1 Score: 83.2 bits (204), Expect = 2.700e-12
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 0
Query:  422 RQKRELAAGNLSAVSQLAGGQVMEVAARDEAWDPFRHGPPKKKEKVSIAAMFYDTKTGETITTTEASKTHKRKHQINSLAIQAAEREADLLEGKARGMQSKAQTQGKYGW 532
            R  RE A+ +  +V        +E+ +R+E        PP    +VSIAA FY+TKTG T T+T+A+KT +RKHQINSLAI AAERE +LL+ K +  ++K +T  +YGW
Sbjct:  217 RALREFASVHGPSVDIAEARGHVELRSREELIAASDARPP----EVSIAAQFYNTKTGATTTSTKATKTQRRKHQINSLAISAAERELELLDKKGKSNKTKHETNARYGW 322          
BLAST of NO22G01520 vs. NCBI_GenBank
Match: CBN79222.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9
Identity = 47/119 (39.50%), Postives = 65/119 (54.62%), Query Frame = 0
Query:  416 SRRQKQRQKRELAAGNLSAVSQLAGGQVMEVAARDEAWDPFRHGP---PKKKEKVSIAAMFYDTKTGETITTTEASKTHKRKHQINSLAIQAAEREADLLEGKARGMQSKAQTQGKYGW 532
            +RR+ +  +R LA GNL A+   +   VM++      ++P R  P      +E+  I +  YD  TG+T+ T E +   KRKHQIN LA QAA  E DL+E       +KAQT  KYGW
Sbjct:  163 TRRKGRDMERALARGNLGALG--SEMPVMDLEQGSNEYNPLRTKPTTAAMNQEQKHIESSVYDPSTGKTVKTLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 279          
The following BLAST results are available for this feature:
BLAST of NO22G01520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM21476.15.400e-5352.63Mitotic checkpoint protein PRCC [Nannochloropsis g... [more]
XP_005856276.19.800e-4781.75hypothetical protein NGA_2119710, partial [Nannoch... [more]
XP_009036672.12.700e-1245.45hypothetical protein AURANDRAFT_64044 [Aureococcus... [more]
CBN79222.11.300e-939.50conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004109NSK004109Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01520.1NO22G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595835gene_7163Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g72gene8923Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01520.1NO22G01520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01520 ID=NO22G01520|Name=NO22G01520|organism=Nannochloropsis oceanica|type=gene|length=1720bp
ATGTCCTTGCTGGGTGTGGACTATGGCAGCGACTCGGACGCGGAGGGCAA
CCAGCAGCAACAGCAGTCTTCCGCCCCGCCTCCCCCGCCCTTCTCCTCGG
CCTCCTCCCATGCTCTCCTTCCCGAGACCGCCACCGATGGCAAGAAACAC
AAGAAGAAGGACAAAAAGCCTAAGAAGAAAAAGGCTAAGGTCGCACTTTC
CATTTTGCCGGCGCATATACAAGCAGCATTGATGCGGGCGGTGCCTTTGC
GAAGGGCCAGGGATAGCAGCAAGGGGGTCACGGGGGGGAGGTTTTTAAGT
GATGACGACGGAGACGAGGACGAGGACGACGACGATCTAGATGGGGCTGG
GGAGGAGGAAGAGCTGGATGATGAGgtgcgtgaacggcagccgtggtgta
gtgagaacatggatctcttggctctcccttttttgacctctcgacttctt
gtcaaccccttccaacactctcacgagccccttctccttccaaactcagG
AGCGAGAACGCCGCCGCAAGATCCGAGCTCAAGTCGCCGAGAGCAAAGCC
ATCGTTTCTCGTCAAGCCGCTGGTGCGACGGGCTTGTTCGCCCTCCTGCC
CAAACCCAAAGCCGAAGAAGCTCTAGATCTGGCTCTCGTCAAAAGCAACA
AAGCCGCTGCCGAAAGGAAGAAGGTAAAAGATATAAAAGAAGCAGCAGCA
GCAGCAGCAGCAGTGGAGGCAGCAGCAGTGGCAGCTGAGAGTGAAGACAG
TGGGGAGGACGAGGATGAGGACGAGGACGAAGGAAGGGGAGAAAATGGGT
CTGGGCCGCTGCATCCCTCCCTCATGGCAAGCGCTAAAGCCGCTGCTCTA
CCACGCGTAACGATAGTCAAGAAAGATGTGCCTGGCATCTCTCCTACAAT
GGCAGCACCTGCAGCGATACCGACAGCAGCTGCAGATTCAGCAGGGGCAG
AGAGTGCACAATTCTCTTCTGTTCATCATCCGTCTTCTTTTTCGGTGACC
TCGACCACGACGAGCACGGCACCCTACTACAACCACGCACACACGCACAC
AACAACAACAAGAACAACAACAACAGCAACAGCAGCAGCATCAGCACCAG
CACCAGCAACAGGAAGAGGAGGTAATGTACACAACGTACATGCCGGGCGG
CAACAACAAGGGGGAGAAGGAGCAGGAGGAGGAGCAGGAGGAGGAGCAGG
AGGAGGAGGAGGGGGGGAATACCAGGCGGCATGGGATGCTTATTACGCCG
CCCAAGCGCAACAACAACCACAGCAACAACAGCAACAATACTATCCTCCC
ATCCAGCACCAACAGCATGAAGAACAAGACGAGCTTGATGAGTTCGGACA
ACCCCTCACCGGGGCTGAATCCCGCCGGCAAAAGCAACGGCAGAAGAGAG
AGCTCGCAGCAGGGAACCTCTCCGCCGTTAGTCAGCTAGCAGGAGGGCAA
GTTATGGAGGTGGCGGCCAGAGACGAGGCCTGGGATCCATTTCGACATGG
CCCGCCCAAGAAGAAGGAGAAGGTGTCTATTGCCGCCATGTTTTACGACA
CCAAGACAGGGGAAACCATCACCACCACGGAAGCAAGCAAGACCCACAAG
CGGAAGCATCAGATCAATAGCCTTGCCATTCAGGCCGCAGAACGAGAAGC
GGATTTGCTGGAGGGGAAGGCGAGAGGCATGCAGAGCAAGGCGCAGACGC
AGGGGAAGTACGGCTGGTAA
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protein sequence of NO22G01520.1

>NO22G01520.1-protein ID=NO22G01520.1-protein|Name=NO22G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MSLLGVDYGSDSDAEGNQQQQQSSAPPPPPFSSASSHALLPETATDGKKH
KKKDKKPKKKKAKVALSILPAHIQAALMRAVPLRRARDSSKGVTGGRFLS
DDDGDEDEDDDDLDGAGEEEELDDEERERRRKIRAQVAESKAIVSRQAAG
ATGLFALLPKPKAEEALDLALVKSNKAAAERKKVKDIKEAAAAAAAVEAA
AVAAESEDSGEDEDEDEDEGRGENGSGPLHPSLMASAKAAALPRVTIVKK
DVPGISPTMAAPAAIPTAAADSAGAESAQFSSVHHPSSFSVTSTTTSTAP
YYNHAHTHTTTTRTTTTATAAASAPAPATGRGGNVHNVHAGRQQQGGEGA
GGGAGGGAGGGGGGEYQAAWDAYYAAQAQQQPQQQQQQYYPPIQHQQHEE
QDELDEFGQPLTGAESRRQKQRQKRELAAGNLSAVSQLAGGQVMEVAARD
EAWDPFRHGPPKKKEKVSIAAMFYDTKTGETITTTEASKTHKRKHQINSL
AIQAAEREADLLEGKARGMQSKAQTQGKYGW*
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Synonyms
Publications