NO22G01450, NO22G01450 (gene) Nannochloropsis oceanica

Overview
NameNO22G01450
Unique NameNO22G01450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length537
Alignment locationchr22:425789..426325 +

Link to JBrowse

Properties
Property NameValue
DescriptionElongation factor 1-alpha
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:425789..426325 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0016787hydrolase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR009000Transl_B-barrel
IPR009001Transl_elong_EF1A/Init_IF2_C
IPR004160Transl_elong_EFTu/EF1A_C
IPR004161Transl_elong_EFTu/EF1A_2
Homology
BLAST of NO22G01450 vs. NCBI_GenBank
Match: EWM21485.1 (translation elongation factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 344.7 bits (883), Expect = 1.700e-91
Identity = 173/180 (96.11%), Postives = 175/180 (97.22%), Query Frame = 0
Query:    1 MVVTIAPAMVTTEVKSVEMHHESMAEAVPGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPLVVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKAVDVK--GKKK 179
            MVVTIAPAMVTTEVKSVEMHHESMAEA+PGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKP+VVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKA D K  G KK
Sbjct:  264 MVVTIAPAMVTTEVKSVEMHHESMAEALPGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPMVVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKATDSKKGGAKK 443          
BLAST of NO22G01450 vs. NCBI_GenBank
Match: CBJ32893.1 (EEF1A2, eukaryotic translation elongation factor 1 alpha [Ectocarpus siliculosus] >CBJ32894.1 EEF1A1, eukaryotic translation elongation factor 1 alpha [Ectocarpus siliculosus])

HSP 1 Score: 290.4 bits (742), Expect = 3.700e-75
Identity = 140/177 (79.10%), Postives = 155/177 (87.57%), Query Frame = 0
Query:    1 MVVTIAPAMVTTEVKSVEMHHESMAEAVPGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPLVVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKAVDVKGKK 178
            MVVT AP M+ TEVKSVEMHHE++ EAVPGDNVGFNVKNVSVK+IRRGYVAGDSK+DPP GA+ F AQVIVMNHPGQI NGY PVLDCHTAHVACKF EIT+K+DRR+G V E NPKFV++GD C V +EPSKP+ VESF EYPPLGRFAVRDMRQTVAVGV+KSV+KK V  K KK
Sbjct:  264 MVVTFAPCMLDTEVKSVEMHHEALPEAVPGDNVGFNVKNVSVKDIRRGYVAGDSKRDPPKGASAFNAQVIVMNHPGQISNGYAPVLDCHTAHVACKFKEITQKMDRRSGKVMEENPKFVKTGDACMVNMEPSKPMCVESFQEYPPLGRFAVRDMRQTVAVGVIKSVEKKEVSTKKKK 440          
BLAST of NO22G01450 vs. NCBI_GenBank
Match: KZS17901.1 (Elongation factor 1-alpha [Daphnia magna])

HSP 1 Score: 279.6 bits (714), Expect = 6.600e-72
Identity = 134/176 (76.14%), Postives = 153/176 (86.93%), Query Frame = 0
Query:    1 MVVTIAPAMVTTEVKSVEMHHESMAEAVPGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPLVVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKAVDVKGK 177
            MVVT AP  +TTEVKSVEMHHE++ EA+PGDNVGFNVKNVSVKE+RRG+VAGDSK +PP GAA+F AQVIV+NHPGQI NGY PVLDCHTAH+ACKFAEI EK DRRTG  TEANPKF++SGD   +TL PSKPL VESF+++PPLGRFAVRDMRQTVAVGV+KSV+ K +   GK
Sbjct:  276 MVVTFAPCQLTTEVKSVEMHHEALEEALPGDNVGFNVKNVSVKELRRGFVAGDSKNNPPKGAADFFAQVIVLNHPGQIGNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEANPKFIKSGDAAMITLVPSKPLCVESFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDLGAGGK 451          
BLAST of NO22G01450 vs. NCBI_GenBank
Match: XP_006666031.1 (elongation factor 1-alpha [Cordyceps militaris CM01] >EGX96154.1 elongation factor 1-alpha [Cordyceps militaris CM01])

HSP 1 Score: 279.3 bits (713), Expect = 8.600e-72
Identity = 136/177 (76.84%), Postives = 152/177 (85.88%), Query Frame = 0
Query:    1 MVVTIAPAMVTTEVKSVEMHHESMAEAVPGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPLVVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKAVDVKGKK 178
            MVVT AP+MV+TEVKSVEMHHE +A+ VPGDNVGFNVKNVSVKEIRRG VAGDSK DPPAGAA+F AQVIV+NHPGQI NGY PVLDCHTAH+ACKF+EI EKIDRRT  VTE NPKF++SGD   V + PSKPL VE+F+EYPPLGRFAVRDMRQTVAVGV+K+V+K     K  K
Sbjct:  279 MVVTFAPSMVSTEVKSVEMHHEQLAQGVPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPAGAASFNAQVIVINHPGQISNGYAPVLDCHTAHIACKFSEILEKIDRRTNKVTETNPKFIKSGDSALVKMVPSKPLCVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKAVATGKVTK 455          
BLAST of NO22G01450 vs. NCBI_GenBank
Match: EFX85268.1 (hypothetical protein DAPPUDRAFT_300259 [Daphnia pulex])

HSP 1 Score: 278.9 bits (712), Expect = 1.100e-71
Identity = 134/176 (76.14%), Postives = 152/176 (86.36%), Query Frame = 0
Query:    1 MVVTIAPAMVTTEVKSVEMHHESMAEAVPGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPLVVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKAVDVKGK 177
            MVVT AP  +TTEVKSVEMHHE++ EAVPGDNVGFNVKNVSVKE+RRG+VAGDSK +PP GAA+F AQVIV+NHPGQI NGY PVLDCHTAH+ACKFAEI EK DRRTG  TE NPKF++SGD   +TL PSKPL VESF+++PPLGRFAVRDMRQTVAVGV+KSV+ K +   GK
Sbjct:  276 MVVTFAPCQLTTEVKSVEMHHEALEEAVPGDNVGFNVKNVSVKELRRGFVAGDSKNNPPKGAADFYAQVIVLNHPGQIGNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKFIKSGDAAMITLVPSKPLCVESFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDLGAGGK 451          
BLAST of NO22G01450 vs. NCBI_GenBank
Match: BAK52319.1 (translation elongation factor 1 alpha [Ergobibamus cyprinoides])

HSP 1 Score: 278.9 bits (712), Expect = 1.100e-71
Identity = 133/177 (75.14%), Postives = 152/177 (85.88%), Query Frame = 0
Query:    1 MVVTIAPAMVTTEVKSVEMHHESMAEAVPGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPLVVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKAVDVKGKK 178
            MV+T+AP  VTTEVKSVEMHHES+ EA PGDNVGFNVKNVSVKEIRRG V GDSK+DPP GA  FV+QVIVMNHPGQI NGY PVLDCHTAH+ACKF  I +K+D+RT AV E NPKF++SGD   VT+ PSKP+VVE+FTEYPPLGRFA+RDMRQTVAVGV++SV+KK V+ K  K
Sbjct:  264 MVITVAPTQVTTEVKSVEMHHESLPEAGPGDNVGFNVKNVSVKEIRRGNVVGDSKRDPPYGAETFVSQVIVMNHPGQIHNGYSPVLDCHTAHIACKFVTIDQKLDKRTSAVKEENPKFIKSGDSAIVTMAPSKPMVVEAFTEYPPLGRFAIRDMRQTVAVGVIRSVNKKLVEGKVTK 440          
BLAST of NO22G01450 vs. NCBI_GenBank
Match: XP_021924307.1 (elongation factor 1-alpha [Zootermopsis nevadensis] >XP_021924308.1 elongation factor 1-alpha [Zootermopsis nevadensis] >XP_021924309.1 elongation factor 1-alpha [Zootermopsis nevadensis] >KDR17161.1 Elongation factor 1-alpha [Zootermopsis nevadensis])

HSP 1 Score: 278.9 bits (712), Expect = 1.100e-71
Identity = 135/171 (78.95%), Postives = 148/171 (86.55%), Query Frame = 0
Query:    1 MVVTIAPAMVTTEVKSVEMHHESMAEAVPGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPLVVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKAV 172
            MVVT APA +TTEVKSVEMHHE++ EAVPGDNVGFNVKNVSVKE+RRGYVAGDSK +PP GAA F+AQVIV+NHPGQI NGY PVLDCHTAH+ACKFAEI EK DRRTG VTE NPK ++SGD   V L PSKP+ VESF E+PPLGRFAVRDMRQTVAVGV+KSV  K V
Sbjct:  276 MVVTFAPANLTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAEFIAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKVTEENPKSIKSGDAAIVNLVPSKPMCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVTTKDV 446          
BLAST of NO22G01450 vs. NCBI_GenBank
Match: BAM29151.1 (elongation factor 1 alpha 1 [Daphnia magna] >KZS16105.1 Elongation factor 1-alpha 1 [Daphnia magna])

HSP 1 Score: 278.9 bits (712), Expect = 1.100e-71
Identity = 134/176 (76.14%), Postives = 152/176 (86.36%), Query Frame = 0
Query:    1 MVVTIAPAMVTTEVKSVEMHHESMAEAVPGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPLVVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKAVDVKGK 177
            MVVT AP  +TTEVKSVEMHHE++ EAVPGDNVGFNVKNVSVKE+RRG+VAGDSK +PP GAA+F AQVIV+NHPGQI NGY PVLDCHTAH+ACKFAEI EK DRRTG  TE NPKF++SGD   +TL PSKPL VESF+++PPLGRFAVRDMRQTVAVGV+KSV+ K +   GK
Sbjct:  276 MVVTFAPCQLTTEVKSVEMHHEALEEAVPGDNVGFNVKNVSVKELRRGFVAGDSKNNPPKGAADFFAQVIVLNHPGQIGNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKFIKSGDAAMITLVPSKPLCVESFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDLGAGGK 451          
BLAST of NO22G01450 vs. NCBI_GenBank
Match: XP_020059229.1 (hypothetical protein ASPACDRAFT_1879088 [Aspergillus aculeatus ATCC 16872] >OJK02890.1 hypothetical protein ASPACDRAFT_1879088 [Aspergillus aculeatus ATCC 16872])

HSP 1 Score: 278.1 bits (710), Expect = 1.900e-71
Identity = 133/170 (78.24%), Postives = 147/170 (86.47%), Query Frame = 0
Query:    1 MVVTIAPAMVTTEVKSVEMHHESMAEAVPGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPLVVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKA 171
            MVVT APA VTTEVKSVEMHH+ + E VPGDNVGFNVKNVSVKE+RRG VAGDSK DPPAGAA+F AQVIV+NHPGQ+  GY PVLDCHTAH+ACKFAE+ EKIDRRTG   E NPKF++SGD   V + PSKP+ VESFTEYPPLGRFAVRDMRQTVAVGV+K+VDK A
Sbjct:  275 MVVTFAPANVTTEVKSVEMHHQQLKEGVPGDNVGFNVKNVSVKEVRRGNVAGDSKNDPPAGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAIEQNPKFIKSGDAAIVKMIPSKPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKAVDKSA 444          
BLAST of NO22G01450 vs. NCBI_GenBank
Match: XP_007916224.1 (putative elongation factor 1-alpha protein [Phaeoacremonium minimum UCRPA7] >EON98973.1 putative elongation factor 1-alpha protein [Phaeoacremonium minimum UCRPA7])

HSP 1 Score: 277.7 bits (709), Expect = 2.500e-71
Identity = 133/168 (79.17%), Postives = 147/168 (87.50%), Query Frame = 0
Query:    1 MVVTIAPAMVTTEVKSVEMHHESMAEAVPGDNVGFNVKNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPLVVESFTEYPPLGRFAVRDMRQTVAVGVVKSVDK 169
            MVVT APA VTTEVKSVEMHHE + E VPGDNVGFNVKNVSVKEIRRG VAGDSK DPPAGAA+F AQVIV+NHPGQ+  GY PVLDCHTAH+ACKFAEI EKIDRRTG   E+NPKF++SGD   V + PSKP+ VE+FT+YPPLGRFAVRDMRQTVAVGV+K+VDK
Sbjct:  275 MVVTFAPANVTTEVKSVEMHHEQLTEGVPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPAGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAEIQEKIDRRTGKSVESNPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
The following BLAST results are available for this feature:
BLAST of NO22G01450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21485.11.700e-9196.11translation elongation factor 1 [Nannochloropsis g... [more]
CBJ32893.13.700e-7579.10EEF1A2, eukaryotic translation elongation factor 1... [more]
KZS17901.16.600e-7276.14Elongation factor 1-alpha [Daphnia magna][more]
XP_006666031.18.600e-7276.84elongation factor 1-alpha [Cordyceps militaris CM0... [more]
EFX85268.11.100e-7176.14hypothetical protein DAPPUDRAFT_300259 [Daphnia pu... [more]
BAK52319.11.100e-7175.14translation elongation factor 1 alpha [Ergobibamus... [more]
XP_021924307.11.100e-7178.95elongation factor 1-alpha [Zootermopsis nevadensis... [more]
BAM29151.11.100e-7176.14elongation factor 1 alpha 1 [Daphnia magna] >KZS16... [more]
XP_020059229.11.900e-7178.24hypothetical protein ASPACDRAFT_1879088 [Aspergill... [more]
XP_007916224.12.500e-7179.17putative elongation factor 1-alpha protein [Phaeoa... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01450.1NO22G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01450.1NO22G01450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01450 ID=NO22G01450|Name=NO22G01450|organism=Nannochloropsis oceanica|type=gene|length=537bp
ATGGTTGTGACCATCGCACCCGCCATGGTGACGACTGAAGTTAAGTCCGT
AGAGATGCACCACGAGTCTATGGCTGAGGCCGTCCCTGGTGACAACGTCG
GGTTCAACGTTAAGAACGTGTCGGTCAAGGAGATCCGTCGTGGCTACGTC
GCGGGTGACTCCAAGAAGGACCCCCCCGCCGGTGCTGCCAACTTCGTGGC
GCAGGTCATCGTCATGAACCACCCCGGTCAGATCCAAAACGGCTACTGCC
CAGTGCTTGACTGCCACACCGCGCACGTTGCCTGCAAGTTCGCCGAGATC
ACGGAAAAGATTGACCGACGTACCGGCGCCGTCACGGAAGCCAACCCCAA
GTTTGTCCAGTCGGGGGATGGTTGCTACGTGACCCTCGAGCCCTCCAAGC
CCTTGGTGGTGGAGTCCTTCACTGAGTACCCCCCTCTGGGCCGTTTCGCC
GTGCGTGATATGCGACAGACTGTGGCTGTGGGTGTGGTCAAGAGTGTCGA
CAAGAAGGCAGTCGATGTCAAGGGCAAGAAGAAGTAA
back to top

protein sequence of NO22G01450.1

>NO22G01450.1-protein ID=NO22G01450.1-protein|Name=NO22G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MVVTIAPAMVTTEVKSVEMHHESMAEAVPGDNVGFNVKNVSVKEIRRGYV
AGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLDCHTAHVACKFAEI
TEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPLVVESFTEYPPLGRFA
VRDMRQTVAVGVVKSVDKKAVDVKGKKK*
back to top
Synonyms
Publications