NO22G01430, NO22G01430 (gene) Nannochloropsis oceanica

Overview
NameNO22G01430
Unique NameNO22G01430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2825
Alignment locationchr22:421330..424154 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:421330..424154 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom
IPR001079Galectin_CRD
Homology
[Close]
BLAST of NO22G01430 vs. NCBI_GenBank
Match: EWM21490.1 (hypothetical protein Naga_100019g63 [Nannochloropsis gaditana])

HSP 1 Score: 338.6 bits (867), Expect = 4.700e-89
Identity = 231/484 (47.73%), Postives = 278/484 (57.44%), Query Frame = 0 
Query:  223 SSSNSNSDAYGSDPHMPLQPPTPAEKGGGF----RISGGGEIEFPHVQGKSLDRARFPAQWLVRGLKEEWDSREEEKPLVVPLADFGL--QKG-KHILALRITIAADAKRFAVNLCPGPLPPDDAHEPAPKEILAHINPRRIYKNGSIVYNSRHSGSWTDDPPPTVPLKGLPPVFLGVPVTLLISLDKDLISLSVDDQTACEIFLNTDGRGKMLSRLTQLALHLPTKEESVGFQEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDINEVGMGATLSRLGGLLGQGGGAAGGMAVVAVSNLPESTGEE-VEKVKADLWALVGGVGQGPREVHLKVGASTAFVVLTDAGDLGETVRRLDWTEYGGKKIRLARSNKRSF 699
            S    +SDA+GS   +     +   +GGG         G EI    V+GKSLDRARFP QWL RG  EEWDSR+ E PLV+PL DFG+  + G K +LALR+T+A+ AKRF +N+CPGPL P++  E APK+++AH NPRRIYKNGS+VYN+R+   W DDPPPTVPLKGLPP+F   PVTLLIS DKDL+SL++DDQ ACEIFLN DGRG+ L RL +LALHLP KE++VGFQEE+                                                           XXXXXXXXXXXXXXXXXXXXXXXX                                                    D    GMG  LSRLGGLL +     G  +VVAV+NLPE+  ++ VE++K DL  L  GVGQ PREVH K  +STAFVVL D  DL ETV+ LDW EY GKK+R++RS+KRSF
Sbjct:  122 SDIGQHSDAFGSTRSL---ASSAVSQGGGLLEHEGTRAGKEIGAVFVEGKSLDRARFPTQWLARGALEEWDSRQAEGPLVMPLKDFGITPESGKKKVLALRMTVASTAKRFTINICPGPLAPEEGQEVAPKDVIAHFNPRRIYKNGSLVYNARYENRWIDDPPPTVPLKGLPPLFCDSPVTLLISFDKDLVSLALDDQPACEIFLNADGRGEALDRLDELALHLPIKEDTVGFQEEV----------------------------------VLHEVWWSPEPPAEQGRGERASAAGXXXXXXXXXXXXXXXXXXXXXXXXIDLGVSKGAGRATVGHEGRAADMQPQFSQPLPFDPAPARYGPLMSESHEKGVDGGSDGMGMKLSRLGGLL-RSVNERGPGSVVAVNNLPETQAQDAVERIKEDLRTLFQGVGQCPREVHFKPNSSTAFVVLDDPRDLTETVKCLDWAEYAGKKLRMSRSSKRSF 567
The following BLAST results are available for this feature:
BLAST of NO22G01430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21490.14.700e-8947.73hypothetical protein Naga_100019g63 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004118NSK004118Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01430.1NO22G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO22G01430.2NO22G01430.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|105276gene_7150Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g63gene8931Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01430.1NO22G01430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO22G01430.2NO22G01430.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01430 ID=NO22G01430|Name=NO22G01430|organism=Nannochloropsis oceanica|type=gene|length=2825bp
GAAGCCCGAGGAGCAGGAGCACCTCCTCAAGCGAACGTGCGGGGACAAGA
CCAAACGAAACCGCTCTCCGCCTGCAAATCCTAGCCTCCTTCCTCCCACC
ATCATCCTCCCTCAATCAACCTCCAGCTTTCCAAGCAAATGGACCAGCTT
ACAATCAGTGAAAAGGGCCTGCGGCAGGTTTACGACTTGTTGAAGGAGCA
GGTAACAAAGTATGgttagttttgtcggggtgtttttggctcatggcgtc
cacacccacccatcatcctcttctcccacctcaccacatccctttccccc
ccccctgtcccctcaaaagGCGGATGCCCTCCGTGCTGCCAAGCAAGCTG
CATTGCAAGCCAAGCTAGCATCTGCACGAAGAGAAGCCGAGGCATCAGGA
TTGGCAAGTTCCTTGAGCGCGATGGGCACTGCGTCCTGGAGCAGCAGTAG
CCTAGGCGGCGGGAAGCGGCCCTCGGTGGGTGGTGTCCCGACGCGGCCGA
GCTTGAATAGAGGCAGTGGTGCCAGACGTCCCAGCACAGCCCCGTCTTTC
AGTCGACATGAGCATCCCGGGGGCTTCTCGGATGACGAGGTCGAGGATGA
CGGCATGTACGGCGGCGGAGGAGGAGGGAGGGGTGGGTCACTATCTCACT
GTGAGCCCCAGCACCACCAGCACCGGCAGCAGCAACAACATCAAGAGGAA
GACGACGAAAAAAGCAACAGCAGCAGAAACGGCTACCCAGGAGGTGGAAA
TGGGGGTCGTGCGAGCACTGATGGCAACATTCGACCAAAACGCCCCTCAG
CCGCGGCCTCCATACCGAAGCGAGCCAAGAAAAATGACTTCGTAATCCCG
AAAAAGAATCCAACAGCAGCAGCAGTTGCAGCAGCAGCAGTATCATCATC
ATCAGCAACTTATCAGCATATTGGGGCAGGTGATGATGGCTTTATCATTC
CTCGTCGGGAGGATCGGGACACGTATGGCGGTAGCAGCAGCAACAGCAAC
AGTGATGCATACGGCTCAGATCCACACATGCCTTTACAACCACCAACACC
TGCGGAGAAAGGAGGAGGGTTCCGGATAAGCGGCGGAGGAGAAATTGAGT
TTCCACATGTGCAGGGCAAATCGTTGGACCGGGCTCGGTTTCCTGCTCAG
TGGCTGGTCCGGGGCCTTAAGGAGGAGTGGGATTCGAGGGAGGAGGAGAA
GCCTTTGGTGGTGCCTTTGGCTGATTTTGGgtaagtcaaaaatccaaacg
atgagtgtatggaatttgttgtgtgtgttcatgtgtttgagtgtacttgt
ctgtgtgtgcttggtgcatggcatatctcccacccttcgtccccttccca
ggtctccacaagggcggaaaactcaacgcccagtcctcgtcctctacctc
agtcctcccctcccccgaagacgatcaggaagctgaccctgcattctttt
gaccgccttctttctccctctccatattttcttttttgagcagCCTTCAA
AAGGGTAAGCATATTCTTGCGCTGCGCATCACGATTGCCGCAGACGCCAA
ACGCTTCGCAGTCAACCTCTGTCCCGGGCCCCTGCCCCCCGACGACGCCC
ACGAGCCCGCACCCAAAGAAATTTTAGCTCATATTAACCCTCGGCGAATC
TACAAGAATGGCTCCATCGTCTACAACTCCCGCCATTCGGGAAGCTGGAC
AGATGATCCTCCACCCACCGTCCCCTTGAAGGGCCTTCCCCCCGTTTTCC
TCGGCGTACCTGTCACGTTACTCATCTCACTAGACAAGGACCTCATCTCC
CTGTCGGTCGACGATCAGACCGCTTGTGAAATTTTCCTCAATACAGATGG
GCGAGGGAAGATGCTCTCTCGTCTCACTCAGCTCGCTTTGCATTTACCAA
CAAAAGAGGAATCAGTCGGTTTCCAAGAGGAAATAGTCGTACATGAGGTT
TGGTGGAGCCCTGACCCACCCACACCTCCAGATGCGGCAGGAGCAGGAGG
ATTAGGAGGAGGGGCAGGAGAATTAGGAGGAGGGGCAGGAGGAGGAGGAG
GAGGGGCAGGAGGAGGAGGAGGGGGAGGAAGAAGAACAGATTTGCTCGCT
CCTGAGGTGGCTCGAGCAGCAGCAGCAGCGGCTGCAGCGATGATTGAAGT
GGGTAGTGGTAGTAGTGGTGTGGGAAGGGAAGGAGGGGCGGCGCGGCTTC
AGCAACAGTTGCCACTACCCCTGCAGCAGCCGACGCCAGCGTCTTACGGG
CCGCCAGCCACCACCACTCCCACCGTCACCAGCGGCGCCAATCGAGGGGA
CAGGGATGAAGGAAACAGCTCTGGAGGTGGCGGCGGAAGCGATATCAATG
AAGTGGGCATGGGTGCCACGCTTTCGAGGCTGGGAGGGCTGCTGGGCCAG
GGTGGAGGTGCTGCAGGAGGAATGGCTGTGGTGGCTGTTAGTAACCTCCC
CGAGTCCACGGGAGAAGAGGTGGAGAAAGTAAAGGCCGATTTGTGGGCAT
TGGTGGGAGGTGTAGGACAAGGGCCGAGGGAAGTGCACCTTAAAGTGGGT
GCGTCCACGGCGTTTGTGGTGCTAACGGACGCGGGGGACTTGGGCGAAAC
AGTGCGTCGCTTGGACTGGACGGAGTATGGTGGAAAGAAAATACGCCTTG
CTCGGTCGAACAAGCGTTCGTTTAGCTAGTATAGCTACATGGTAGCTAGT
AGTCGTCAAAGGAAATAAAGACATAGCGTAAAGTATACAAAATGACTTCC
GCGGCGCGGGAGCGGCAGGCAGCACTTGCAAAACGAAGCCCAATGGGCCA
GATTACGGTCAACCTCGTCATTTTA
back to top

protein sequence of NO22G01430.1

>NO22G01430.1-protein ID=NO22G01430.1-protein|Name=NO22G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=720bp
MDQLTISEKGLRQVYDLLKEQADALRAAKQAALQAKLASARREAEASGLA
SSLSAMGTASWSSSSLGGGKRPSVGGVPTRPSLNRGSGARRPSTAPSFSR
HEHPGGFSDDEVEDDGMYGGGGGGRGGSLSHCEPQHHQHRQQQQHQEEDD
EKSNSSRNGYPGGGNGGRASTDGNIRPKRPSAAASIPKRAKKNDFVIPKK
NPTAAAVAAAAVSSSSATYQHIGAGDDGFIIPRREDRDTYGGSSSNSNSD
AYGSDPHMPLQPPTPAEKGGGFRISGGGEIEFPHVQGKSLDRARFPAQWL
VRGLKEEWDSREEEKPLVVPLADFGLQKGKHILALRITIAADAKRFAVNL
CPGPLPPDDAHEPAPKEILAHINPRRIYKNGSIVYNSRHSGSWTDDPPPT
VPLKGLPPVFLGVPVTLLISLDKDLISLSVDDQTACEIFLNTDGRGKMLS
RLTQLALHLPTKEESVGFQEEIVVHEVWWSPDPPTPPDAAGAGGLGGGAG
ELGGGAGGGGGGAGGGGGGGRRTDLLAPEVARAAAAAAAAMIEVGSGSSG
VGREGGAARLQQQLPLPLQQPTPASYGPPATTTPTVTSGANRGDRDEGNS
SGGGGGSDINEVGMGATLSRLGGLLGQGGGAAGGMAVVAVSNLPESTGEE
VEKVKADLWALVGGVGQGPREVHLKVGASTAFVVLTDAGDLGETVRRLDW
TEYGGKKIRLARSNKRSFS*
back to top

protein sequence of NO22G01430.2

>NO22G01430.2-protein ID=NO22G01430.2-protein|Name=NO22G01430.2|organism=Nannochloropsis oceanica|type=polypeptide|length=700bp
MADALRAAKQAALQAKLASARREAEASGLASSLSAMGTASWSSSSLGGGK
RPSVGGVPTRPSLNRGSGARRPSTAPSFSRHEHPGGFSDDEVEDDGMYGG
GGGGRGGSLSHCEPQHHQHRQQQQHQEEDDEKSNSSRNGYPGGGNGGRAS
TDGNIRPKRPSAAASIPKRAKKNDFVIPKKNPTAAAVAAAAVSSSSATYQ
HIGAGDDGFIIPRREDRDTYGGSSSNSNSDAYGSDPHMPLQPPTPAEKGG
GFRISGGGEIEFPHVQGKSLDRARFPAQWLVRGLKEEWDSREEEKPLVVP
LADFGLQKGKHILALRITIAADAKRFAVNLCPGPLPPDDAHEPAPKEILA
HINPRRIYKNGSIVYNSRHSGSWTDDPPPTVPLKGLPPVFLGVPVTLLIS
LDKDLISLSVDDQTACEIFLNTDGRGKMLSRLTQLALHLPTKEESVGFQE
EIVVHEVWWSPDPPTPPDAAGAGGLGGGAGELGGGAGGGGGGAGGGGGGG
RRTDLLAPEVARAAAAAAAAMIEVGSGSSGVGREGGAARLQQQLPLPLQQ
PTPASYGPPATTTPTVTSGANRGDRDEGNSSGGGGGSDINEVGMGATLSR
LGGLLGQGGGAAGGMAVVAVSNLPESTGEEVEKVKADLWALVGGVGQGPR
EVHLKVGASTAFVVLTDAGDLGETVRRLDWTEYGGKKIRLARSNKRSFS*
back to top
Synonyms
Publications