NO22G01390, NO22G01390 (gene) Nannochloropsis oceanica

Overview
NameNO22G01390
Unique NameNO22G01390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1609
Alignment locationchr22:412958..414566 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:412958..414566 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO22G01390 vs. NCBI_GenBank
Match: EWM21504.1 (hypothetical protein Naga_100019g58 [Nannochloropsis gaditana])

HSP 1 Score: 299.7 bits (766), Expect = 7.900e-78
Identity = 154/227 (67.84%), Postives = 193/227 (85.02%), Query Frame = 0 
Query:    1 MSVEHWEEELKKRVRELQDHLANLRVSEESTTTAALQKRKLIDACERRLEEVREARKNCDRAVRILKDPTKRNDGKKMLRGVDKRVRHCQDEVRRIELKIKYSDSHSVHIDHETADDEYKKEIDRMQGGMKESYARQLETLDRTLEVASKAKDNVEAQGQQVRSLANETARIGNGLDRADFMVRRFKRQVSSDRICKVLVVGNVLILIVLVTLVVLNSKPILRTIGL 228
            MS+EHW+EEL++RV ELQDHL  L+ S  S +TA LQKRK +DAC+RRL+EVREA KNCDRAVRI+KDP KR  GK MLRGV++++R CQDEVRR ELK+ Y  SH++++D +T++ EYKKEIDRMQ GMKESYARQLETLDRTL+VA KA+D VE+QGQQ+ +LA ET RIG+GL+RA++ V+RFKRQVSSDRIC+ L VGNVL+L+VLV L +LN KP+L +IG+
Sbjct:    1 MSLEHWQEELQRRVGELQDHLKELKESHGSVSTATLQKRKHLDACQRRLDEVREASKNCDRAVRIVKDPVKRTAGKDMLRGVERQIRECQDEVRRAELKLNY--SHAINMDKDTSEGEYKKEIDRMQDGMKESYARQLETLDRTLDVAGKARDGVESQGQQIHTLAEETGRIGDGLERAEYAVQRFKRQVSSDRICQALTVGNVLVLVVLVVLAILNRKPLLHSIGV 225
The following BLAST results are available for this feature:
BLAST of NO22G01390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21504.17.900e-7867.84hypothetical protein Naga_100019g58 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004122NSK004122Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01390.1NO22G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595763gene_7145Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g58gene8936Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01390.1NO22G01390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01390 ID=NO22G01390|Name=NO22G01390|organism=Nannochloropsis oceanica|type=gene|length=1609bp
ATTTACTTGTTGGTGGGAGGCCATAGGCAGGAGGTTTGAGGAGCTCGACC
GTGATGGTCGGGGACGGGGCAAACGTATATCGGAGCCGCACAGGCCTTCA
TGTGATGCATAATAACTAAGCATCCCACCCATGGGGGTGTGATAATCTGC
ACGGTACAGTGTCGACCTGCATCGGTACGCGGCATAATAAAAAGCCCTCA
CTGAGGCCTGAATGGCGCACGCAAAAAGATCGAATCACGCCAGTCAAGTA
GTAGTAGTAGTTCCATATATCCTCTCTTGCTTTCCGAAAAACAGCAGCAC
AGCTGACCACATACACTCCGCATATAACTAATATACAGGTCAAGGCAATC
GATTATAGCCAGGCTTGCCGTAGGTGGCTTTGCTTGCTGACACGCGTATC
AAGGCTCTTCTCTTCGAGGGGGGGGGAGGTGCAGCAGCAGCAGCAGCAAC
AGCAGGAGCATTACAAGTATGTCCGTGGAGCACTGgtacgtttcggtgga
ggaacgcgaggcgaggtgtacaaaatgatgaggacggtggtacactggta
aagtggcttgccatgacgggtggatttttatctccgttgaccggatgaca
tgcatctcactcctcttgcacactttccccacacatccttccaaccatta
tcttcgcacaacagGGAAGAAGAGTTGAAAAAAAGGGTACGGGAGCTACA
GGACCATCTGGCAAACCTCAGGGTGTCCGAGGAGAGCACCACGACTGCGG
CTTTGCAAAAGCGCAAATTGATTGATGCTTGCGAACGCCGATTGGAAGAG
GTGCGGGAGGCCCGTAAGAACTGTGACCGGGCCGTGCGGATTTTGAAGGA
CCCGACAAAGCGTAATGATGGGAAAAAGATGCTGCGCGGGGTGGATAAGC
GCGTTCGGCATTGTCAGGATGAGGTGCGTCGCATAGAGCTAAAAATCAAA
TACTCCGATTCGCACAGCGTGCATATAGACCATGAGACGGCGGATGACGA
GTACAAAAAAGAGATTGATCGCATGCAGGGTGGGATGAAAGAAAGCTATG
CCCGTCAATTGGAGACGCTGGACCGAACGTTGGAGGTGGCGAGCAAGGCG
AAAGACAATGTGGAGGCGCAGGGACAGCAGGTTCGTTCCCTTGCCAACGA
GACGGCGCGCATTGGGAATGGGTTGGACCGAGCTGACTTTATGGTGCGCC
GGTTTAAGCGCCAGGTGTCCTCGGATCGGATATGTAAGGTTTTAGTGGTA
GGTAATGTGTTGATACTCATCGTGCTGGTGACATTGGTGGTCCTTAATAG
TAAGCCAATTCTTCGTACCATTGGGCTGTAAGGGAGGGAGAAAGCGGAAG
GAGGGAGGGAGGGAGCTGAAGAAGGGAAGGAGGGAGGGAAGTGGGAGACA
AGGAGCGAAAAGTGTGGATAAGCTGGTAAATAATGTATCATGCCGACGAA
GATCAGCGCGTGGCAGGTTTTATTTATCACGGTGTCAATGGTGGTGGTAG
CGGGAGGGGGAGCTGTGAATGAAGGGATGGAGATGGTGAAAATCAAAGGA
ACTTTGTACAGAGATTGAAAGAATGCGAAAGGAAATAAATAGTGTGGCAA
CGAGGGCCA
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protein sequence of NO22G01390.1

>NO22G01390.1-protein ID=NO22G01390.1-protein|Name=NO22G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MSVEHWEEELKKRVRELQDHLANLRVSEESTTTAALQKRKLIDACERRLE
EVREARKNCDRAVRILKDPTKRNDGKKMLRGVDKRVRHCQDEVRRIELKI
KYSDSHSVHIDHETADDEYKKEIDRMQGGMKESYARQLETLDRTLEVASK
AKDNVEAQGQQVRSLANETARIGNGLDRADFMVRRFKRQVSSDRICKVLV
VGNVLILIVLVTLVVLNSKPILRTIGL*
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Synonyms
Publications