NO22G01180, NO22G01180 (gene) Nannochloropsis oceanica

Overview
NameNO22G01180
Unique NameNO22G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3272
Alignment locationchr22:351636..354907 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:351636..354907 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO22G01180 vs. NCBI_GenBank
Match: EWM21503.1 (hypothetical protein Naga_100019g37 [Nannochloropsis gaditana])

HSP 1 Score: 276.2 bits (705), Expect = 2.400e-70
Identity = 190/522 (36.40%), Postives = 239/522 (45.79%), Query Frame = 0 
Query:   58 SDNKGLFMLLPDGPVWRSSDVKSMQGFMEEFNLRADESDMPQLMCAFEKLVDTLGIETCTQALDRVKEQRLQQQLQRLPGYQSNISNTTASSISAYSSRTMADDTRHEENHRAHAGKSMEAAETLQTLMKHHVGGKGFLLPGAADVREEIQGGKDXXXXXXXXXXXXXXXXXAFHSVTASSVGSPSHSLSLSPPGNSNNINNTDVMDLLPLQSQATLFCQSQDSSPGAFTNTTSXXXXXXXXXSDCKSSNMSAHVIPPASLSWS-----PNAVPLPPGQAPTNRM-----PIPNILGQTRPTAGEKSTETISNLPYIKPEVSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVEDGYIPTPRNDGPWHYLGTLPASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTKARPAAMNFGRYGDHLPYSGRKVCRVKGCDGHQRWPDYLCGQHGGGRCRWEGCSLFHQGINSMGLLLCGKHCKAVGAAYRRPR 570
            S   GLFMLLP GPVWRS DVKSM GFM+EFN RADE+D  QL+  F  +V+ +GI+ C +ALD+VK+Q+  Q  Q+ P ++    +T+A                 +E     A    +A E +Q++   H GGKG   P  A    E     +                   H+VT      P  S+S    G +     T        Q +A+ +  S+ S+        S         S   + +    ++ PA+LSW+     P++V   P  A    M     P  ++ GQ    +G    + +  +   + E S                                            EDGYIPTPRNDGPWHYLGTLP S+                                                 K RPAAMNFGRYGDHLPY+GRK+CRVK CDG+QRWPDYLCGQHGGGRCRWEGCSLFHQGINSMGLLLCGKHCKAVGA YRRPR
Sbjct:    2 SSQNGLFMLLPRGPVWRSEDVKSMVGFMDEFNRRADEADSLQLLETFNFIVEAVGIDACVEALDQVKKQQQIQLSQQAP-FRCGSKSTSAP----------------KEGTSMDAVGGPQAHEVMQSITHSHAGGKG-QGPPTAVAASEATMATNGTGANHEWSDAGVVAATVLHTVTPGESKPPCLSISQLDKGAALPGTATQ-------QGEASSYIGSESSTAATXXXXVS---------SSPSAGDRPFPMLQPATLSWAGVPPVPSSVSSLPDSAARVPMDPVSYPFGSVTGQLPFHSGRNGGDAVDEMGAARSEPS---------------LFGQPPRRSLSTSVPIEATASQGLVSTLEEDGYIPTPRNDGPWHYLGTLPESNASSTSASGRRGTEKLTGAGSGALPSTNSVSSAGSDDDG-----------KHRPAAMNFGRYGDHLPYNGRKICRVKNCDGNQRWPDYLCGQHGGGRCRWEGCSLFHQGINSMGLLLCGKHCKAVGATYRRPR 463
[Close]
BLAST of NO22G01180 vs. NCBI_GenBank
Match: EWM25545.1 (hypothetical protein Naga_100130g15, partial [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 4.000e-12
Identity = 42/89 (47.19%), Postives = 45/89 (50.56%), Query Frame = 0 
Query:  499 GDHLPYSGRKVCRVKGCDGHQRWPDYLCGQHGGGRC-------------RWEG---------CSLFHQGINSMGLLLCGKHCKAVGAAY 566
            G HLP  GR VCR+ GC    RWPDY C  HGGGRC             R EG         C  FHQ  NS G LLCG+HC+  GA Y
Sbjct:  371 GLHLPDRGRHVCRIAGCGNEYRWPDYQCKLHGGGRCQYLWWLRGRGEGGRGEGPDGVGLVLACPKFHQSKNSKGELLCGEHCRLTGAVY 459
The following BLAST results are available for this feature:
BLAST of NO22G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21503.12.400e-7036.40hypothetical protein Naga_100019g37 [Nannochlorops... [more]
EWM25545.14.000e-1247.19hypothetical protein Naga_100130g15, partial [Nann... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004144NSK004144Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01180.1NO22G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595680gene_7121Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g37gene8957Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01180.1NO22G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01180 ID=NO22G01180|Name=NO22G01180|organism=Nannochloropsis oceanica|type=gene|length=3272bp
TCGATCATTTCCACAATTTTTCTTTCTTTTTTGCTTCCCGATCCGATTTA
TAAATCCCAAACACAACACATCAGAATTAATAGGTTTATCTTCTCTTCCC
CCGACGATGAAGAAACCCACTAACTGCTCCTGTTGCTCACAACAATAGTA
TTTTTTTCCTTCCCGACAACATCACATCCAAATTCGTCCATTTCCTCACC
TGCTGTCGCAGTGTCCCATTTCATTTTTTGGGGGTAGGAGGAGGTTGAGG
ACCATGAAGTCGTGTTTACATTGCGCCGTCAATAAATGTTTTCGCGGCCT
CATTTGTAGGAGCTGGTGCTGCTTCCATTCCAGCGGCAGCTGGGAGAAGT
GTAGGAAAATGGCCCTTCTCCCAAGAATCCCCCCTCCTGCTGGAGCTGCG
GCTACCTCATCTGCTCCTCTCGTCATCTGGCTCGCCCTGCTGTGGGATAT
TGGAAGTCGGGGCGTCTGCTGGCACCATGGCTTAAGGATGGTCGTTCAGA
TGCTCGTGGTAATCTTTCATGTATTGTCATGTTGCTTTTTGTGTCGTTGT
GTGCGGTGTGGGGATGGTCTGAACACGCGGGGGGAAGGGGAAGTTTGAGG
GCCGTGAAATGTTTTCGCGGCCTCAACAGCCCGTGACGGCGCAATGTAAA
CGTGACTCCTTGGGTTGACTCGGAGCAAAGCAATTAGGGGGGGGACATAT
GAAGCATACAAGGCACCACATGTTTTGGTTTCCATCGAGCGTCCAGTAAT
ATATCCAGGTTACAATGAGCTTAAATCATGATGTTACAAAGAGCAGCTCA
ATTAACGTTGCCGTGTAGACCATGGGTTATAAATGTGCGTGGCTTTCCTG
CGGCCCCTCGGCCCTCGTAGCTACTTTTATGTCCCATTCCTTCTTTGATC
ATGGCCATCTCAACTCCGAAACCAACAAACCCACACAATTCATTGACACG
AGTACAGTACCTCAAACGCACGCTGGGACATCCCCTTTTTGTGCCATCAA
CGGTCCGCCGAACTGGCAGCACACACTCCCTTCAATCCCTCTTCCTAGCT
GTAGAAAAAATGCCCTCCGCTTCCGACAATAAAGGACTCTTCATGCTCCT
CCCAGACGGACCCGTTTGGAGGAGCTCGGATGTCAAATCTATGCAAGGCT
TTATGGAAGAGTTTAATCTTCGCGCTGATGAGAGTGACATGCCGCAGCTT
ATGTGCGCTTTTGAAAAGCTTGTCGACACGTTGGGTATTGAGACATGCAC
TCAGGCCCTAGATCGAGTCAAAGAGCAACGCCTGCAACAGCAGCTGCAGC
GCCTACCAGGCTACCAGAGCAATATCAGTAACACCACAGCTTCCAGTATC
TCCGCTTATTCAAGTCGCACCATGGCAGACGgtatgtcatagcatcgatg
tcctacattctcctgtgcgcaacccctacccagcgcacggccctttcttt
tttcacgctgctttcgccttctgtacataactttgtattttggtagaact
ctgaaccgagcactggtgcctcttactgtcttgcacatccctcgcgactc
actccacgacctgtatatgtcctatgtcccacttcccgctcaattacagA
CACGCGCCACGAGGAAAACCATCGGGCCCACGCAGGCAAATCCATGGAAG
CAGCTGAGACGCTGCAAACTCTGATGAAACATCACGTAGGAGGAAAGGGC
TTTCTTTTACCTGGGGCGGCAGACGTGCGGGAAGAGATACAGGGCGGGAA
GGATGGTGGTGGCGGTGGTGGTAGCGGTGTTGGTAGCGGTGGCGGTGGTA
CGGATGCATTTCACTCCGTGACCGCGTCTAGTGTAGGCAGTCCTTCTCAT
TCCCTTTCGCTCTCGCCGCCAGGAAACAGCAACAACATAAACAACACCGA
TGTCATGGACTTGCTGCCGCTGCAGTCACAAGCTACCTTGTTCTGTCAAA
GCCAAGACTCTTCACCTGGCGCCTTTACTAATACTACTAGCACGACAGCT
CTAATCAGTAGCAGTAGTAGCGATTGCAAGAGTAGCAATATGTCTGCCCA
TGTGATTCCACCTGCCTCACTGTCCTGGTCCCCCAACGCCGTCCCCCTCC
CCCCGGGGCAAGCCCCTACCAACCGGATGCCTATCCCCAACATCTTGGGA
CAGACAAGGCCTACGGCAGGGGAAAAGAGTACAGAAACCATTTCTAATCT
TCCTTACATTAAGCCAGAGGTCTCTTCGCCTGCATCAGCGAGTCGAAAAC
GCGCGCGCTCCTCCGCATCCTCCTCGACCACGTTACCGGCTCCAGCGACA
GCAACTGCAACGGCACCAGCAGCACCACCACTCACCACATCTACCGCCAC
CGGAGTGGAGGACGGCTACATCCCAACCCCCCGCAATGATGGTCCGTGGC
ACTACCTCGGTACTTTGCCCGCATCATCCACCTCTTTTTCCTCTGCCGCT
GACGGTGGTGGGGGAGATGGAAGTAGAGATGGAGGGAAATCGACCAGCGG
CGAAGCTGCAGCTGCAGCTGGAGCATCAACCAGCAGTGTTAGAGCCTCAA
GTGCCGGGAGTGATGAAGAAGGAACAAAGGCTAGACCTGCCGCCATGAAC
TTTGGGAGATACGGCGATCACTTGCCATACAGCGGCCGCAAGGTGTGTCG
AGTCAAGGGTTGCGATGGGCACCAGCGGTGGCCGGACTACTTATGCGGGC
AGCATGGGGGGGGGCGATGCCGGTGGGAGGGCTGCTCACTATTTCATCAG
GGAATCAATAGCATGGGCTTGCTCTTGTGTGGCAAGCACTGCAAGGCCGT
TGGTGCGGCGTATCGCCGCCCGCGTAGTGGGGGAAATCCGAAGGCAGATG
GGGGCGGAGGTGGCGGAGGTGCCAGGGATGGCACTGTCAGCAGCAGTACC
ACCTGCAAGCAAAAGTAGAACACGTGTGGTAGAGGTGGGAAAGGCAAGGG
GGCTTCAGGTACGGTTGGGCCTGGCCTTCTGTATATGTGTGTATCACAAA
AAACATTTTCACCTGCATGTCCTTATACTTGTTTTGGAACCAAAACTGTC
GACTTAAACAAGCCAAACTCAAATGGAAATGGTCGTAAAGAAACAAAAAT
CAAACCCACGCGAAAGCGACAAGCAAGGCTGAAAAGTCATGAAGACACAA
TCAGATAGCGGACGCAGCAAACAGAGAAGCAGACAACACAATTTGACTCT
GGCCCTTCGCCTCTTTCTCGCCCATCTTCCTATCAGACAAAAGCTGCAAT
TTTCAAAAGTAAATGAGAGAGG
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protein sequence of NO22G01180.1

>NO22G01180.1-protein ID=NO22G01180.1-protein|Name=NO22G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MAISTPKPTNPHNSLTRVQYLKRTLGHPLFVPSTVRRTGSTHSLQSLFLA
VEKMPSASDNKGLFMLLPDGPVWRSSDVKSMQGFMEEFNLRADESDMPQL
MCAFEKLVDTLGIETCTQALDRVKEQRLQQQLQRLPGYQSNISNTTASSI
SAYSSRTMADDTRHEENHRAHAGKSMEAAETLQTLMKHHVGGKGFLLPGA
ADVREEIQGGKDGGGGGGSGVGSGGGGTDAFHSVTASSVGSPSHSLSLSP
PGNSNNINNTDVMDLLPLQSQATLFCQSQDSSPGAFTNTTSTTALISSSS
SDCKSSNMSAHVIPPASLSWSPNAVPLPPGQAPTNRMPIPNILGQTRPTA
GEKSTETISNLPYIKPEVSSPASASRKRARSSASSSTTLPAPATATATAP
AAPPLTTSTATGVEDGYIPTPRNDGPWHYLGTLPASSTSFSSAADGGGGD
GSRDGGKSTSGEAAAAAGASTSSVRASSAGSDEEGTKARPAAMNFGRYGD
HLPYSGRKVCRVKGCDGHQRWPDYLCGQHGGGRCRWEGCSLFHQGINSMG
LLLCGKHCKAVGAAYRRPRSGGNPKADGGGGGGGARDGTVSSSTTCKQK*
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Synonyms
Publications