NO22G00950, NO22G00950 (gene) Nannochloropsis oceanica

Overview
NameNO22G00950
Unique NameNO22G00950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr22:300803..301594 -

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Properties
Property NameValue
DescriptionUbiquitin-like-conjugating enzyme ATG10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:300803..301594 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007135Autophagy-rel_prot_3
Homology
[Close]
BLAST of NO22G00950 vs. NCBI_GenBank
Match: EWM21439.1 (hypothetical protein Naga_100019g10 [Nannochloropsis gaditana])

HSP 1 Score: 99.0 bits (245), Expect = 2.400e-17
Identity = 56/159 (35.22%), Postives = 79/159 (49.69%), Query Frame = 0 
Query:  111 LPLTFTSSETE-----MIVADWELHIVYDEIYNIPALWFKATRSDGVPLTREEVACLCGVSVGE-GGGGRGGELTVLSQDDHPILGQPFFFLHPCGTPGRMARLLIARE-----RIGEDNDDGKKALIGLTYLVKWFGLVAPFLGLRFPPPFVQAMLIS 259
            LP T  SS T       ++ DW+LH++YDE Y  P LW + TR+DG P  R+E+A  CG++  +       G  T+L                       M+R++ + +     R G D +       GL YL++WF LVAP LGL+ PP FVQA+L S
Sbjct:   65 LPPTQPSSPTPDRARIAVMTDWDLHVLYDEAYRTPTLWLRVTRADGAPFIRDELARFCGIATEDTDQENEVGRWTIL-----------------------MSRMICSGQNEIEFRTGRDEEGVDACQRGLDYLIQWFSLVAPVLGLKIPPQFVQAILFS 200
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BLAST of NO22G00950 vs. NCBI_GenBank
Match: XP_005852454.1 (hypothetical protein NGA_0728300 [Nannochloropsis gaditana CCMP526] >EKU23379.1 hypothetical protein NGA_0728300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 94.7 bits (234), Expect = 4.400e-16
Identity = 55/178 (30.90%), Postives = 84/178 (47.19%), Query Frame = 0 
Query:    1 MFLAPDVFRHGLSAWTSSPHAQAAWKEGGGEEPPDGWXXXXXXXXXXVGGRRGMPFATLCLTRSHHL---QKEMGKEE-EGKRCRN-------LVPEGYGITNREEEGIEGGEEDPCVLPMLPLTFTSSETEM-IVADWELHIVYDEIYNIPALWFKATRSDGVPLTREEVACLCGVS 167
            M +A ++FR G+ AW SSP  +AAW+   G+E PDGW                MPF +L  TR++     + + G E+ EG+ C +                               + PM P + T     + ++ DW+LH++YDE Y  P LW + TR+DG P  R+E+A  CG++
Sbjct:    1 MTIAAEIFREGIVAW-SSPLVRAAWEAHKGDEGPDGWRWEWEMREAPPDKLNRMPFVSLSFTRTYPPIAGKGDFGNEKLEGENCADRRSSYXXXXXXXXXXXXXXXXXXXXXXXXASLPPMQPSSPTPDRARIAVMTDWDLHVLYDEAYRTPTLWLRVTRADGAPFIRDELARFCGIA 177
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BLAST of NO22G00950 vs. NCBI_GenBank
Match: XP_015257592.1 (PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Cyprinodon variegatus] >XP_015257593.1 PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Cyprinodon variegatus])

HSP 1 Score: 90.1 bits (222), Expect = 1.100e-14
Identity = 60/176 (34.09%), Postives = 82/176 (46.59%), Query Frame = 0 
Query:   84 VPEGYGITNREEEGIEGGEEDPCVLPMLPLTFTSSETE-----------MIVADWELHIVYDEIYNIPALWFKATRSDGVPLTREEVACLCGVSVGEGGGGRGGELTVLSQDDHPILGQPFFFLHPCGTPGRMARLLIARERIGEDNDDGKKALIGLTYLVKWFGLVAPFLGLRFP 249
            +P G+G    E++G E    +P  L   PL  T SE E             V  WE H++Y   Y  P L+F+A   DG  LT EE+     +    G   +   L  +SQ +HP+LGQPFFFLHPC T   M  +L A        D G+     + Y++ W  +V P +GL  P
Sbjct:   67 LPAGWG---PEQDGGESPGAEPAALQPDPLVSTGSEEEDADLRLPSNSSSPVLQWEYHVLYSCSYATPVLYFRAFTLDGRSLTLEEI--WKSIHPNFGLRLQNCPLNAVSQQEHPLLGQPFFFLHPCRTEEFMGPVLQAA------LDHGRP----VNYVLSWLSVVGPMVGLEVP 227
[Close]
BLAST of NO22G00950 vs. NCBI_GenBank
Match: XP_021111381.1 (ubiquitin-like-conjugating enzyme ATG10 isoform X2 [Heterocephalus glaber])

HSP 1 Score: 86.3 bits (212), Expect = 1.600e-13
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 0 
Query:  103 EDPCVLPMLPLTFTSSETEMIVADWELHIVYDEIYNIPALWFKATRSDGVPLTREEVACLCGVSVGEGGGGRGGELTVLSQDDHPILGQPFFFLHPCGTPGRMARLLIARERIGEDNDDGKKALIGLTYLVKWFGLVAPFLGLRFPPPFVQA 255
            E+   LP   L    ++    V  +E H++Y   Y +P L+F+A+  DG PLT +++    GV          G    ++Q +HPILGQPFF LHPC T   MA +L   ++I             + Y+  W  +V P +GL  P  + +A
Sbjct:  115 EEALDLPSDDLEVIETQAASEVVKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLQDI--WNGVHESYKTRPLQGPWDTITQQEHPILGQPFFVLHPCKTTEFMAPVLKNSQKINRT----------VNYITSWLSIVGPAVGLNLPLSYAKA 254
[Close]
BLAST of NO22G00950 vs. NCBI_GenBank
Match: XP_007941665.1 (PREDICTED: ubiquitin-like-conjugating enzyme ATG10 [Orycteropus afer afer])

HSP 1 Score: 85.9 bits (211), Expect = 2.100e-13
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 0 
Query:  103 EDPCVLPMLPLTFTSSETEMIVADWELHIVYDEIYNIPALWFKATRSDGVPLTREEVACLCGVSVGEGGGGRGGELTVLSQDDHPILGQPFFFLHPCGTPGRMARLLIARERIGEDNDDGKKALIGLTYLVKWFGLVAPFLGLRFPPPFVQA 255
            E+   LP      T +E    V  +E H++Y   Y +P L+F+A+  DG PLT +++    GV          G    +SQ +HPILGQPFF LHPC T   M  ++   E+I  +          + Y+  W  ++ P +GL  P  + +A
Sbjct:   72 EEALELPPDDFEVTETEATSKVIKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLKDI--WEGVHECYKSRLLQGPWDTISQQEHPILGQPFFVLHPCKTSEFMLPVVKNSEKINRN----------INYITSWLSVIGPVVGLNLPLSYAKA 211
[Close]
BLAST of NO22G00950 vs. NCBI_GenBank
Match: EHB00187.1 (Autophagy-related protein 10, partial [Heterocephalus glaber])

HSP 1 Score: 85.5 bits (210), Expect = 2.700e-13
Identity = 47/147 (31.97%), Postives = 71/147 (48.30%), Query Frame = 0 
Query:  108 LPMLPLTFTSSETEMIVADWELHIVYDEIYNIPALWFKATRSDGVPLTREEVACLCGVSVGEGGGGRGGELTVLSQDDHPILGQPFFFLHPCGTPGRMARLLIARERIGEDNDDGKKALIGLTYLVKWFGLVAPFLGLRFPPPFVQA 255
            LP   L    ++    V  +E H++Y   Y +P L+F+A+  DG PLT +++    GV          G    ++Q +HPILGQPFF LHPC T   MA +L   ++I             + Y+  W  +V P +GL  P  + +A
Sbjct:    7 LPSDDLEVIETQAASEVVKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLQDI--WNGVHESYKTRPLQGPWDTITQQEHPILGQPFFVLHPCKTTEFMAPVLKNSQKINRT----------VNYITSWLSIVGPAVGLNLPLSYAKA 141
[Close]
BLAST of NO22G00950 vs. NCBI_GenBank
Match: XP_006143551.1 (PREDICTED: ubiquitin-like-conjugating enzyme ATG10 [Tupaia chinensis] >XP_014441403.1 PREDICTED: ubiquitin-like-conjugating enzyme ATG10 [Tupaia chinensis])

HSP 1 Score: 85.5 bits (210), Expect = 2.700e-13
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 0 
Query:  103 EDPCVLPMLPLTFTSSETEMIVADWELHIVYDEIYNIPALWFKATRSDGVPLTREEVACLCGVSVGEGGGGRGGELTVLSQDDHPILGQPFFFLHPCGTPGRMARLLIARERIGEDNDDGKKALIGLTYLVKWFGLVAPFLGLRFPPPFVQA 255
            E+   LP+     T +  E  V  +E H++Y   Y +P L+F+A+  DG PLT +++    GV          G    ++Q +HPILGQPFF LHPC T   M  +L   ++I  +            Y+  W  +V P +GL  P  + +A
Sbjct:   71 EEALQLPLDDFEMTETAVESEVIKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLKDI--WEGVHECYKTRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQKINRN----------ANYITSWLSIVGPVVGLNLPLSYAKA 210
[Close]
BLAST of NO22G00950 vs. NCBI_GenBank
Match: XP_015813071.1 (PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Nothobranchius furzeri])

HSP 1 Score: 85.5 bits (210), Expect = 2.700e-13
Identity = 60/185 (32.43%), Postives = 85/185 (45.95%), Query Frame = 0 
Query:   74 EEEGKRCRNLVPE-GYGITNREEEGIEGGEEDPCVLPMLPLTFTSSETEMIVADWELHIVYDEIYNIPALWFKATRSDGVPLTREEV---------ACLCGVSVGEGGGGRGGELTVLSQDDHPILGQPFFFLHPCGTPGRMARLLIARERIGEDNDDGKKALIGLTYLVKWFGLVAPFLGLRFP 249
            +EE     +LVP+ G G  + E++G        C++         SE   +V  +E HI+Y   Y+ P L+F+A   +G  LT EEV          CL           +   L  LSQ +HP+LGQPFF+LHPC T   M  +L A E       D  +    + Y++ W  LV P +GL  P
Sbjct:   77 KEEPDCASSLVPDSGRGELDEEDDG-------SCIV---------SEGSSVVLQYEYHILYSSSYSTPVLYFRAFTLEGRSLTLEEVWSFVHPNFRLCL-----------QNSPLNALSQQEHPLLGQPFFYLHPCRTEEFMKLVLTAAE-------DKHRP---MNYVLLWLSLVGPAVGLDVP 224
[Close]
BLAST of NO22G00950 vs. NCBI_GenBank
Match: XP_015813072.1 (PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X2 [Nothobranchius furzeri])

HSP 1 Score: 85.5 bits (210), Expect = 2.700e-13
Identity = 60/185 (32.43%), Postives = 85/185 (45.95%), Query Frame = 0 
Query:   74 EEEGKRCRNLVPE-GYGITNREEEGIEGGEEDPCVLPMLPLTFTSSETEMIVADWELHIVYDEIYNIPALWFKATRSDGVPLTREEV---------ACLCGVSVGEGGGGRGGELTVLSQDDHPILGQPFFFLHPCGTPGRMARLLIARERIGEDNDDGKKALIGLTYLVKWFGLVAPFLGLRFP 249
            +EE     +LVP+ G G  + E++G        C++         SE   +V  +E HI+Y   Y+ P L+F+A   +G  LT EEV          CL           +   L  LSQ +HP+LGQPFF+LHPC T   M  +L A E       D  +    + Y++ W  LV P +GL  P
Sbjct:   69 KEEPDCASSLVPDSGRGELDEEDDG-------SCIV---------SEGSSVVLQYEYHILYSSSYSTPVLYFRAFTLEGRSLTLEEVWSFVHPNFRLCL-----------QNSPLNALSQQEHPLLGQPFFYLHPCRTEEFMKLVLTAAE-------DKHRP---MNYVLLWLSLVGPAVGLDVP 216
[Close]
BLAST of NO22G00950 vs. NCBI_GenBank
Match: XP_012396852.2 (ubiquitin-like-conjugating enzyme ATG10 [Sarcophilus harrisii])

HSP 1 Score: 85.5 bits (210), Expect = 2.700e-13
Identity = 57/177 (32.20%), Postives = 82/177 (46.33%), Query Frame = 0 
Query:   84 VPEGYGITNREEEGIEGGEEDPCVLPMLPLTFTSSETEMIVA-----DWELHIVYDEIYNIPALWFKATRSDGVPLTREEVACLCGVSVGEGGGGRGGELTVLSQDDHPILGQPFFFLHPCGTPGRMARLLIARERIGEDNDDGKKALIGLTYLVKWFGLVAPFLGLRFPPPFVQAM 256
            VPE +   ++ EE  EG       L    L    SE   + A      +E H++Y   Y +P L+F+A+  DG PLT +E+    GV             + ++Q +HPILGQPFF LHPC T   M  LL          D+ +K    + Y+  W  +V P +GL  P  + +AM
Sbjct:   56 VPEQF--FSQAEEDDEGARNSDLNLDDFELYSDDSEVVGLTAAAEVIRYEYHVLYSCSYRVPVLYFRASFLDGRPLTLKEI--WDGVHQFYKARLLQEPWSTITQQEHPILGQPFFVLHPCKTNEFMTSLL----------DNSEKDNSNINYITSWLSIVGPVVGLNLPLSYAKAM 218
The following BLAST results are available for this feature:
BLAST of NO22G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21439.12.400e-1735.22hypothetical protein Naga_100019g10 [Nannochlorops... [more]
XP_005852454.14.400e-1630.90hypothetical protein NGA_0728300 [Nannochloropsis ... [more]
XP_015257592.11.100e-1434.09PREDICTED: ubiquitin-like-conjugating enzyme ATG10... [more]
XP_021111381.11.600e-1331.58ubiquitin-like-conjugating enzyme ATG10 isoform X2... [more]
XP_007941665.12.100e-1331.58PREDICTED: ubiquitin-like-conjugating enzyme ATG10... [more]
EHB00187.12.700e-1331.97Autophagy-related protein 10, partial [Heterocepha... [more]
XP_006143551.12.700e-1331.58PREDICTED: ubiquitin-like-conjugating enzyme ATG10... [more]
XP_015813071.12.700e-1332.43PREDICTED: ubiquitin-like-conjugating enzyme ATG10... [more]
XP_015813072.12.700e-1332.43PREDICTED: ubiquitin-like-conjugating enzyme ATG10... [more]
XP_012396852.22.700e-1332.20ubiquitin-like-conjugating enzyme ATG10 [Sarcophil... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004167NSK004167Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00950.1NO22G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567238gene_7094Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g10gene8980Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00950.1NO22G00950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00950 ID=NO22G00950|Name=NO22G00950|organism=Nannochloropsis oceanica|type=gene|length=792bp
ATGTTCCTCGCACCTGACGTTTTTCGACACGGCCTATCAGCTTGGACCTC
CTCACCACACGCTCAAGCAGCATGGAAGGAGGGAGGGGGGGAGGAACCGC
CTGATGGGTGGAGTTGGGAGTGGGAGTGGAAGGAGAAAGAAGTAGGTGGC
CGGCGGGGCATGCCGTTCGCTACATTATGTTTGACACGCTCGCATCATTT
GCAAAAGGAGATGGGGAAGGAAGAGGAAGGAAAGCGGTGTCGTAATTTGG
TTCCAGAGGGCTACGGCATCACGAATAGAGAGGAGGAAGGGATAGAAGGG
GGCGAGGAAGACCCTTGTGTCTTGCCTATGTTGCCGCTTACCTTCACTTC
GAGTGAGACCGAGATGATAGTGGCAGACTGGGAGCTTCACATTGTCTACG
ATGAAATATACAATATACCCGCTCTTTGGTTCAAGGCCACAAGATCGGAC
GGCGTGCCGTTGACCAGAGAGGAAGTGGCTTGTTTGTGCGGCGTAAGTGT
TGGGGAAGGAGGGGGGGGGAGAGGGGGGGAGTTGACGGTGTTGTCGCAAG
ACGATCATCCCATCCTCGGCCAGCCCTTTTTTTTCTTGCATCCTTGTGGC
ACTCCTGGCCGTATGGCTCGCCTTTTAATCGCGAGGGAAAGGATAGGCGA
GGACAATGACGACGGGAAAAAGGCACTTATAGGACTGACCTACTTGGTAA
AGTGGTTTGGCCTTGTCGCCCCCTTCCTGGGTCTGCGCTTTCCACCACCA
TTTGTCCAAGCTATGTTGATCTCAGTGGAACAAAAAAAATGA
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protein sequence of NO22G00950.1

>NO22G00950.1-protein ID=NO22G00950.1-protein|Name=NO22G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MFLAPDVFRHGLSAWTSSPHAQAAWKEGGGEEPPDGWSWEWEWKEKEVGG
RRGMPFATLCLTRSHHLQKEMGKEEEGKRCRNLVPEGYGITNREEEGIEG
GEEDPCVLPMLPLTFTSSETEMIVADWELHIVYDEIYNIPALWFKATRSD
GVPLTREEVACLCGVSVGEGGGGRGGELTVLSQDDHPILGQPFFFLHPCG
TPGRMARLLIARERIGEDNDDGKKALIGLTYLVKWFGLVAPFLGLRFPPP
FVQAMLISVEQKK*
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Synonyms
Publications