NO22G00900, NO22G00900 (gene) Nannochloropsis oceanica

Overview
NameNO22G00900
Unique NameNO22G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2633
Alignment locationchr22:284845..287477 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:284845..287477 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO22G00900 vs. NCBI_GenBank
Match: EWM21474.1 (hypothetical protein Naga_100019g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 194.1 bits (492), Expect = 1.400e-45
Identity = 153/373 (41.02%), Postives = 178/373 (47.72%), Query Frame = 0 
Query:  346 LAADATLSKMKLSTNFGAPLRXXXXXXXXXXXXXXXXXXXXXXXXGLNTPSTPXXXXXXXXXXXXXXXXXXXXXXFSPTPATPLSRRSDVTTMDSAALSSLINSTTAAGADENNLVELARIHEKIVDLEAKAGKVAKLHHQLQQEQAKTRRAEDAMQALSQQLDDLKRENNVLRQKLADWYHRAGQTD------------------------------------------LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRARSDSITTGAELLGGFKKQRVESPQLSIST-GGEGGGERG--QGHEAXXXXXXXXXXXXXXXXXXEVHTGIFGEGYETPRNTIKGNAIAL 674
            LAADATLSKMKLSTNFGAPL                     XXXX    P+TP                      FSPTPATP +RR+D+  MDS ALSSLI S TA+G+D NNL+ELARIH++IVDLEAKA +V+ +H QLQ+EQ +TRRAE AMQ LS +LD L+REN  LR +L  W+HR G                                             +                                                  KR RSDSIT GAELLGGFKKQRVESP LSIST G EG G+ G  +G                     E+HTG++GEGYETPRNTIK + IAL
Sbjct:   95 LAADATLSKMKLSTNFGAPL-------------GAAGVGGEXXXXXXXXPATP-VGLGLRSREGMGSNGKVNGVAFSPTPATPQNRRTDM--MDSTALSSLITS-TASGSDGNNLIELARIHQRIVDLEAKAEQVSSMHRQLQKEQDRTRRAEAAMQELSHELDALRRENAHLRMELDGWHHREGHAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAMEAGPAAGKEGEVVGTEGEKCEGKERQSGEGKEAHLVAAELLVEAAAAEKDKRVRSDSITKGAELLGGFKKQRVESPGLSISTEGREGVGDGGEKEGSGVATVQKEADKEGAKAVEKKEIHTGVYGEGYETPRNTIKQSPIAL 450
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BLAST of NO22G00900 vs. NCBI_GenBank
Match: XP_005853494.1 (hypothetical protein NGA_0434100, partial [Nannochloropsis gaditana CCMP526] >EKU22867.1 hypothetical protein NGA_0434100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 67.4 bits (163), Expect = 1.900e-7
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0 
Query:  107 EGGPGLPSPWEVLNKHQSHKVTTIPAYSSLNKKEAPI 144
            EGG GLPSPWE LNKHQSH++T IP YSSL KKEAP+
Sbjct:   95 EGGAGLPSPWETLNKHQSHRITNIPPYSSLTKKEAPM 131
The following BLAST results are available for this feature:
BLAST of NO22G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21474.11.400e-4541.02hypothetical protein Naga_100019g1, partial [Nanno... [more]
XP_005853494.11.900e-778.38hypothetical protein NGA_0434100, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL032nonsL032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR075ngnoR075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004175NSK004175Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00900.1NO22G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|102121gene_7088Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g1gene8987Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00900.1NO22G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00900 ID=NO22G00900|Name=NO22G00900|organism=Nannochloropsis oceanica|type=gene|length=2633bp
ATGGCAGGACGCAGCGCCAAGTACAACAACATGGGTGGACGGCGTGATGA
GCAGTCCCCCTTCATTTACACCAACATGCCCCCTCCCCCGCATGCGGGAG
GGCCGCTTCCTCCCTTCACGCCCGGCTACGACGCCCCTCAAGGGCACTAC
GGCGGCCCCCACGACCTGGGCCAGGGCCTTCCTCAACCTCCTTCCCTCCC
TCCTCCCATCCCTCGTCGTCCTGGTGCCAGCAACTCTCCTCCTCCCATGC
CGTCAATCCTGAACGCGGGGAGCAGTAGCGGCGGCGGGGGTGGAGGGGGT
GCTCCTAGTGCAATGGGGGAGGGTGGGCCTGGCTTACCTTCACCGTGGGA
GGTCCTGAATAAGCACCAATCGCACAAAGTTACCACCATCCCGGCCTACT
CTTCCTTGAACAAGAAGGAAGCGCCGATgtacgaggaactgatcaatttc
ccccgtgcgaaggataaggacgatatgcgctgtgtcatgtgtggtctgcc
tccgagcgacctctgtgttatccctcgccaaaataaggacgtctgcaaag
attgcgataaggcaacctggcaacacgccgagacgcaagtcttcttcaag
tggtgcaagggatgcaagaaatttctcaagctttcgtccttctcgcaaaa
gCTCGATGCCGCCAAGTGCGACAAGTGCCGTGAGCGAGGCCGTCAGTCCT
ACCTGGCCAAGAAGGGAAAAGACGGGGATGAAGGCCCGCATCACATGGGC
CACGCCCCCCACCATCGTCACCATCACCCCTCCCACCCGCATGGCGGATC
TCCGCACGGCGGCCTCGGTGGCCATGGGCCCCCTCCTCCCCCCCACCCAC
ACCACCCGCACCACCTTCCCCCCCATTTCGCTCACGGCCCGCACGGTCCT
CACGCACACGGACCCCTCCCTCCCCATCTCCTCCCTCCCCACCACTACCC
CCATGGCCCCCCCCCCCCCCTCATATCCGCATGAGTGCTTTTCCGGGAGg
tcctggcattcctcctttgggccctccccctcctccccaccttcctcccc
accatggaggaggtctgcaccaccccggccctcctcatccgtcttttagG
AATATGGCAGGGGAAGAATATTCGGGGGTGGGCTGCGAGGAGGAGGAGGG
AAAGGGGGAGGAAGGGACAGATGGAGGGGAGGAGAGTCGAAATTCATCGG
GACGAGTGCGGGAAGAAGGGGAGAAGCTGCAACAGCAGCAGCAGTTGAAA
GAGGAGCAACAGCAGGGGGATGGGGCGAGCTTGTCAGCTGACCAGCGGCA
TGAGGGAGGGGAGGTTGGAACAGAGGGGAAGAGAGAGGGAGGGGACGAGG
AAGAGGATTTGGCGGCGGACGCGACGTTGAGCAAGATGAAACTGTCGACA
AATTTTGGAGCTCCCTTACGGGGAGCCGGAGCAGGCGGATCAGGATCAGG
GGACGAGGGAGGTGAGAAAGGAGGCGGTAGGAATGGTTGTGGAGGTCTGA
ACACTCCTAGCACGCCTTCAGGGAGCGGAACGGGCAGCATTAGTGGCGCG
GGTGTGGGAGGGGAGGAGGGAAGGGGGGCGGCGTTCTCACCTACCCCCGC
CACGCCTCTGAGTCGTCGGTCGGATGTAACAACGATGGACAGCGCGGCGC
TAAGTAGTTTGATTAATAGCACTACTGCCGCCGGGGCGGATGAGAATAAT
TTAGTGGAGCTCGCGCGGATTCATGAGAAGATCGTGGATTTGGAAGCGAA
GGCTGGAAAGgtatgagactgtcctccctccttcccttccttcctcgttc
aattctttctttctcctcccctctgtcgtttacaaaataacgtttatgat
atatatatatatgtgtgtgtgtgtgtgtgtttgtgtgtgttatcagtaaa
gcggtaagaagtgctctccattccccgcttcttgcctccctccctccctc
cctccctccctccctcctacaagagcattccctccaggttgatggacttg
aagtactcacttatcccctcctctctccttccttcttgccgtcgacagGT
GGCGAAACTGCACCATCAGCTTCAGCAAGAGCAAGCGAAAACACGCAGGG
CCGAGGACGCTATGCAGGCGCTTTCCCAACAGCTAGACGACCTCAAAAGG
GAAAATAATGTCCTTCGTCAGAAACTCGCCGACTGGTATCACCGTGCGGG
GCAAACGGACCTGCTCGCTGCCCACCAGCAACAATCGCAACAGCAGCAAC
AACGGAAGGAGGAGGAGAAGGAGGGAGGGACGGAAGAGAAGCAGGGAGGT
AGCGTGAAGGACGCTCACCTGATAGCGGCCGAGATGCTGGTGGCAGCAGC
AGCAGAGAAAGACAAGCGGGCAAGGTCGGACTCAATCACAACCGGCGCCG
AGTTGCTGGGAGGATTCAAGAAGCAGCGGGTGGAGAGCCCACAGCTGTCG
ATCTCGACGGGCGGGGAAGGAGGGGGGGAGAGAGGGCAAGGGCATGAGGC
GGTGGAGGAGGGGGAAGGGGGTAAGAAGGGAGAGGGTAAGGAGGGTGGGA
AGAAAGAGGTTCATACGGGAATTTTTGGGGAGGGGTATGAGACGCCTAGG
AACACGATCAAGGGGAATGCAATTGCTCTTTAG
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protein sequence of NO22G00900.1

>NO22G00900.1-protein ID=NO22G00900.1-protein|Name=NO22G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=674bp
MAGRSAKYNNMGGRRDEQSPFIYTNMPPPPHAGGPLPPFTPGYDAPQGHY
GGPHDLGQGLPQPPSLPPPIPRRPGASNSPPPMPSILNAGSSSGGGGGGG
APSAMGEGGPGLPSPWEVLNKHQSHKVTTIPAYSSLNKKEAPISMPPSAT
SAVSEAVSPTWPRREKTGMKARITWATPPTIVTITPPTRMADLRTAASVA
MGPLLPPTHTTRTTFPPISLTARTVLTHTDPSLPISSLPTTTPMAPPPPS
YPHECFSGRNMAGEEYSGVGCEEEEGKGEEGTDGGEESRNSSGRVREEGE
KLQQQQQLKEEQQQGDGASLSADQRHEGGEVGTEGKREGGDEEEDLAADA
TLSKMKLSTNFGAPLRGAGAGGSGSGDEGGEKGGGRNGCGGLNTPSTPSG
SGTGSISGAGVGGEEGRGAAFSPTPATPLSRRSDVTTMDSAALSSLINST
TAAGADENNLVELARIHEKIVDLEAKAGKVAKLHHQLQQEQAKTRRAEDA
MQALSQQLDDLKRENNVLRQKLADWYHRAGQTDLLAAHQQQSQQQQQRKE
EEKEGGTEEKQGGSVKDAHLIAAEMLVAAAAEKDKRARSDSITTGAELLG
GFKKQRVESPQLSISTGGEGGGERGQGHEAVEEGEGGKKGEGKEGGKKEV
HTGIFGEGYETPRNTIKGNAIAL*
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Synonyms
Publications