NO22G00840, NO22G00840 (gene) Nannochloropsis oceanica

Overview
NameNO22G00840
Unique NameNO22G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1802
Alignment locationchr22:271791..273592 -

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Properties
Property NameValue
DescriptionRetinoblastoma binding protein 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:271791..273592 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR022052Histone-bd_RBBP4_N
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO22G00840 vs. NCBI_GenBank
Match: EWM21435.1 (retinoblastoma binding protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 575.1 bits (1481), Expect = 1.900e-160
Identity = 307/412 (74.51%), Postives = 326/412 (79.13%), Query Frame = 0
Query:    1 MAEVDPRIQDTQDEAADKLIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTSENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGKNSKVEVKVKIAHEGEVNRARYMPQNPFVVATKAPSADVFVFDITKHPSEPGPNDGFRPEHICKGHAREGYGLAWSPHKAGNLLSGSDDARICLWDVTEAGKVVNDVTVFRGHTSVVEDVXXXXXXXXXXXXXXXXXXXXXXXXXESPEKPMNRREDAHGAFINCLSFSPHSEFLLLTGSADHMVALWDMRSLTKPLHLFEGHRDEVFQVDWAPFHESVFSSCGADRRVNVWDVSKIGEEQSPEDAEDGPPELLFIHGGHTAKVSDVSWNAEDPWVMASVAEDNILQVWQMADNIYL 413
            MAE D   Q+ QDEA DK+IAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKT+ENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGG N KVEVKVKIAHEGEVNRARYMPQNPFVVATK PSADVFVFDITKHPS PGPND FRPEH+CKGHAREGYGLAWSP   G LLSGSDDAR+CLWD+T+AG+VV +V             XXXXXXXXXXXXXXXXXXXXXXXXX       + R  AH  F+NCLSFSPHS+FL LTGSAD  V LWD+RSL+ PLH FE                                    GEEQS EDA DGPPELLFIHGGHTAKVSD++WN EDPWV+ASVAEDNILQ+WQMADNIY+
Sbjct:    1 MAETDAPDQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRVVEEVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYM 412          
BLAST of NO22G00840 vs. NCBI_GenBank
Match: XP_005853921.1 (retinoblastoma binding protein 4, partial [Nannochloropsis gaditana CCMP526] >EKU22441.1 retinoblastoma binding protein 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 573.2 bits (1476), Expect = 7.100e-160
Identity = 306/412 (74.27%), Postives = 325/412 (78.88%), Query Frame = 0
Query:    1 MAEVDPRIQDTQDEAADKLIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTSENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGKNSKVEVKVKIAHEGEVNRARYMPQNPFVVATKAPSADVFVFDITKHPSEPGPNDGFRPEHICKGHAREGYGLAWSPHKAGNLLSGSDDARICLWDVTEAGKVVNDVTVFRGHTSVVEDVXXXXXXXXXXXXXXXXXXXXXXXXXESPEKPMNRREDAHGAFINCLSFSPHSEFLLLTGSADHMVALWDMRSLTKPLHLFEGHRDEVFQVDWAPFHESVFSSCGADRRVNVWDVSKIGEEQSPEDAEDGPPELLFIHGGHTAKVSDVSWNAEDPWVMASVAEDNILQVWQMADNIYL 413
            MAE D   Q+ QDEA DK+IAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKT+ENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGG N KVEVKVKIAHEGEVNRARYMPQNPFVVATK PSADVFVFDITKHPS PGPND FRPEH+CKGHAREGYGLAWSP   G LLSGSDDAR+CLWD+T+AG++V +V             XXXXXXXXXXXXXXXXXXXXXXXXX         R  AH  F+NCLSFSPHS+FL LTGSAD  V LWD+RSL+ PLH FE                                    GEEQS EDA DGPPELLFIHGGHTAKVSD++WN EDPWV+ASVAEDNILQ+WQMADNIY+
Sbjct:    1 MAETDAPDQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRMVEEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYM 412          
BLAST of NO22G00840 vs. NCBI_GenBank
Match: OWK12628.1 (hypothetical protein Celaphus_00014920 [Cervus elaphus hippelaphus])

HSP 1 Score: 481.5 bits (1238), Expect = 2.800e-132
Identity = 228/402 (56.72%), Postives = 289/402 (71.89%), Query Frame = 0
Query:   13 DEAADKLIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTSENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGKNSKVEVKVKIAHEGEVNRARYMPQNPFVVATKAPSADVFVFDITKHPSEPGPNDGFRPEHICKGHAREGYGLAWSPHKAGNLLSGSDDARICLWDVT---EAGKVVNDVTVFRGHTSVVEDVXXXXXXXXXXXXXXXXXXXXXXXXXESPEKPMNRREDAHGAFINCLSFSPHSEFLLLTGSADHMVALWDMRSLTKPLHLFEGHRDEVFQVDWAPFHESVFSSCGADRRVNVWDVSKIGEEQSPEDAEDGPPELLFIHGGHTAKVSDVSWNAEDPWVMASVAEDNILQVWQMADNIY 412
            D   +++I EEYKIWKKN+PFLYDLVMTHALEWPSLT QWLP V T     +++ H+L+ GTHT + EQN+L+ A+V LP  D + DA  Y+ E+GE GGFG  + K+E+++KI HEGEVNRARYMPQNP ++ATK PS+DV VFD TKHPS+P P+    P+   +GH +EGYGL+W+P+ +G+LLS SDD  ICLWD++   + GKVV+  T+F GHT+VVEDV                          +     +   DAH A +NCLSF+P+SEF+L TGSAD  VALWD+R+L   LH FE H+DE+FQ        ++ +S G DRR+NVWD+SKIGEEQSPEDAEDGPPELLFIHGGHTAK+SD SWN  +PWV+ SV+EDNI+QVWQMA+NIY
Sbjct:   10 DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV-TRPEGKDFSIHRLVLGTHT-SDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDQTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ--------TILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 401          
BLAST of NO22G00840 vs. NCBI_GenBank
Match: XP_004740959.1 (PREDICTED: histone-binding protein RBBP4 isoform X1 [Mustela putorius furo])

HSP 1 Score: 469.2 bits (1206), Expect = 1.400e-128
Identity = 223/402 (55.47%), Postives = 284/402 (70.65%), Query Frame = 0
Query:   13 DEAADKLIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTSENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGKNSKVEVKVKIAHEGEVNRARYMPQNPFVVATKAPSADVFVFDITKHPSEPGPNDGFRPEHICKGHAREGYGLAWSPHKAGNLLSGSDDARICLWDVT---EAGKVVNDVTVFRGHTSVVEDVXXXXXXXXXXXXXXXXXXXXXXXXXESPEKPMNRREDAHGAFINCLSFSPHSEFLLLTGSADHMVALWDMRSLTKPLHLFEGHRDEVFQVDWAPFHESVFSSCGADRRVNVWDVSKIGEEQSPEDAEDGPPELLFIHGGHTAKVSDVSWNAEDPWVMASVAEDNILQVWQMADNIY 412
            D   +++I EEYKIWKK++PFLYDLVMTHALEWPSLT QWLP V T     +++ H+L+ GTHT + EQN+L+ A+V LP  D + DA  Y+ E+GE GGFG  + K+E+++KI HEGEVNRARYMPQNP ++ATK PS+DV VFD TKHPS+P P+    P+   +GH +EGYGL+W+P+ +G+LLS SDD  ICLWD++   + GKVV+  T+F GHT+VVEDV                          +     +   DAH A +NCLSF+P+SEF+L TGSAD  VALWD+R+L   LH FE H+DE+FQ+ W  + +SV  SC        +  SKIGEEQSPEDAEDGPPELLFIHGGHTAK+SD SWN  +PWV+ SV+EDNI+QVWQMA+NIY
Sbjct:   10 DAVEERVINEEYKIWKKSTPFLYDLVMTHALEWPSLTAQWLPDV-TRPEGKDFSIHRLVLGTHT-SDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQLGWITWDKSVLISCFVLTFFKSFCASKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409          
BLAST of NO22G00840 vs. NCBI_GenBank
Match: XP_004740960.1 (PREDICTED: histone-binding protein RBBP4 isoform X2 [Mustela putorius furo])

HSP 1 Score: 469.2 bits (1206), Expect = 1.400e-128
Identity = 223/402 (55.47%), Postives = 284/402 (70.65%), Query Frame = 0
Query:   13 DEAADKLIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTSENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGKNSKVEVKVKIAHEGEVNRARYMPQNPFVVATKAPSADVFVFDITKHPSEPGPNDGFRPEHICKGHAREGYGLAWSPHKAGNLLSGSDDARICLWDVT---EAGKVVNDVTVFRGHTSVVEDVXXXXXXXXXXXXXXXXXXXXXXXXXESPEKPMNRREDAHGAFINCLSFSPHSEFLLLTGSADHMVALWDMRSLTKPLHLFEGHRDEVFQVDWAPFHESVFSSCGADRRVNVWDVSKIGEEQSPEDAEDGPPELLFIHGGHTAKVSDVSWNAEDPWVMASVAEDNILQVWQMADNIY 412
            D   +++I EEYKIWKK++PFLYDLVMTHALEWPSLT QWLP V T     +++ H+L+ GTHT + EQN+L+ A+V LP  D + DA  Y+ E+GE GGFG  + K+E+++KI HEGEVNRARYMPQNP ++ATK PS+DV VFD TKHPS+P P+    P+   +GH +EGYGL+W+P+ +G+LLS SDD  ICLWD++   + GKVV+  T+F GHT+VVEDV                          +     +   DAH A +NCLSF+P+SEF+L TGSAD  VALWD+R+L   LH FE H+DE+FQ+ W  + +SV  SC        +  SKIGEEQSPEDAEDGPPELLFIHGGHTAK+SD SWN  +PWV+ SV+EDNI+QVWQMA+NIY
Sbjct:    9 DAVEERVINEEYKIWKKSTPFLYDLVMTHALEWPSLTAQWLPDV-TRPEGKDFSIHRLVLGTHT-SDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQLGWITWDKSVLISCFVLTFFKSFCASKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 408          
BLAST of NO22G00840 vs. NCBI_GenBank
Match: PKA46760.1 (WD-40 repeat-containing protein MSI1 [Apostasia shenzhenica])

HSP 1 Score: 457.2 bits (1175), Expect = 5.700e-125
Identity = 220/404 (54.46%), Postives = 283/404 (70.05%), Query Frame = 0
Query:   10 DTQDEAADKLIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTSENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGKNSKVEVKVKIAHEGEVNRARYMPQNPFVVATKAPSADVFVFDITKHPSEPGPNDGFRPEHICKGHAREGYGLAWSPHKAGNLLSGSDDARICLWDV--TEAGKVVNDVTVFRGHTSVVEDVXXXXXXXXXXXXXXXXXXXXXXXXXESPEKPMNRREDAHGAFINCLSFSPHSEFLLLTGSADHMVALWDMRSLTKPLHLFEGHRDEVFQVDWAPFHESVFSSCGADRRVNVWDVSKIGEEQSPEDAEDGPPELLFIHGGHTAKVSDVSWNAEDPWVMASVAEDNILQVWQMADNIY 412
            D + E  ++LI EEYKIWKKN+PFLYDLV+THALEWPSLTVQWLP  +      +Y+  K++ GTHT+  E NYL+ A V LPL D E DA++Y+DERGE+GGFG  + KV+V  +I H+GEVNRARYMPQNPFV+ATK  SADV+VFD +KHPS+P  +    P+   KGH  EGYGL+WS  K G+LLSGSDDA+ICLWD+  T   K ++ + +F+ H  VVEDV                          S      +   AH   +NCL+F+P +E+++ TGS D  V L+D+R +   LH F+ HR+EVFQV W+P +E++ +SC   RR+ VWD+S+I EEQ+PEDAEDGPPELLFIHGGHT+K+SD SWN  + WV+ASVAEDNILQ+WQMA+NIY
Sbjct:    7 DFRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPD-RDEPPGKDYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAENDARQYDDERGEIGGFGCSSGKVQVIQQINHDGEVNRARYMPQNPFVIATKTVSADVYVFDYSKHPSKPPLDGTCNPDLRLKGHTTEGYGLSWSLFKQGHLLSGSDDAQICLWDINATPKNKSLDALQIFKVHDGVVEDVAWHLRHEYLFGSVGDDQHLLIWDLRNSTASKPIQSVLAHQGEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKMNSALHTFDCHREEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIY 409          
BLAST of NO22G00840 vs. NCBI_GenBank
Match: XP_017946704.1 (PREDICTED: histone-binding protein RBBP4 isoform X1 [Xenopus tropicalis])

HSP 1 Score: 451.8 bits (1161), Expect = 2.400e-123
Identity = 219/403 (54.34%), Postives = 275/403 (68.24%), Query Frame = 0
Query:   13 DEAADKLIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTSENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGKNSKVEVKVKIAHEGEVNRARYMPQNPFVVATKAPSADVFVFDITKHPSEPGPNDGFRPEHICKGHAREGYGLAWSPHKAGNLLSGSDDARICLWDVT---EAGKVVNDVTVFRGHTSVVEDVXXXXXXXXXXXXXXXXXXXXXXXXXESPEKPMNRREDAHGAFINCLSFSPHSEFLLLTGSADHMVALWDMRSLTKPLHLFEGHRDEVF-QVDWAPFHESVFSSCGADRRVNVWDVSKIGEEQSPEDAEDGPPELLFIHGGHTAKVSDVSWNAEDPWVMASVAEDNILQVWQMADNIY 412
            D   +++I EEYKIWKKN+PFLYDLVMTHALEWPSLT QWLP V T  +  +++ H+L+ GTHT + EQN+L+ A+V LP  D + DA  Y+ E+GE GGFG  + K+E+++KI HEGEVNRARYMPQNP ++ATK PS+DV VFD TKHPS+P P+    P+   +GH +EGYGL+W+P+ +GNLLS SDD  ICLWD++   + GKVV+  T+F GHT+VVEDV                          +     +   DAH A +NCLSF+P+SEF+L TGSAD  VALWD+R+L   LH FE H+DE+F QV                          IGEEQSPEDAEDGPPELLFIHGGHTAK+SD SWN  +PWV+ SV+EDNI+QVWQMA+NIY
Sbjct:   10 DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV-TRPDGKDFSIHRLVLGTHT-SDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQQVXXXXXXXXXXXXXXXXXXXXXXXXXXIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 410          
BLAST of NO22G00840 vs. NCBI_GenBank
Match: XP_018422069.1 (PREDICTED: histone-binding protein RBBP4 isoform X1 [Nanorana parkeri])

HSP 1 Score: 451.4 bits (1160), Expect = 3.100e-123
Identity = 219/403 (54.34%), Postives = 274/403 (67.99%), Query Frame = 0
Query:   13 DEAADKLIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTSENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGKNSKVEVKVKIAHEGEVNRARYMPQNPFVVATKAPSADVFVFDITKHPSEPGPNDGFRPEHICKGHAREGYGLAWSPHKAGNLLSGSDDARICLWDVT---EAGKVVNDVTVFRGHTSVVEDVXXXXXXXXXXXXXXXXXXXXXXXXXESPEKPMNRREDAHGAFINCLSFSPHSEFLLLTGSADHMVALWDMRSLTKPLHLFEGHRDEVF-QVDWAPFHESVFSSCGADRRVNVWDVSKIGEEQSPEDAEDGPPELLFIHGGHTAKVSDVSWNAEDPWVMASVAEDNILQVWQMADNIY 412
            D   +++I EEYKIWKKN+PFLYDLVMTHALEWPSLT QWLP V T     +++ H+L+ GTHT + EQN+L+ A+V LP  D + DA  Y+ E+GE GGFG  + K+E+++KI HEGEVNRARYMPQNP ++ATK PS+DV VFD TKHPS+P P+    P+   +GH +EGYGL+W+P+ +GNLLS SDD  ICLWD++   + GKVV+  T+F GHT+VVEDV                          +     +   DAH A +NCLSF+P+SEF+L TGSAD  VALWD+R+L   LH FE H+DE+F QV                          IGEEQSPEDAEDGPPELLFIHGGHTAK+SD SWN  +PWV+ SV+EDNI+QVWQMA+NIY
Sbjct:   10 DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV-TRPEGKDFSIHRLVLGTHT-SDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQQVXXXXXXXXXXXXXXXXXXXXXXXXXXIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 410          
BLAST of NO22G00840 vs. NCBI_GenBank
Match: XP_010923692.1 (PREDICTED: histone-binding protein MSI1 isoform X1 [Elaeis guineensis])

HSP 1 Score: 451.1 bits (1159), Expect = 4.100e-123
Identity = 219/404 (54.21%), Postives = 290/404 (71.78%), Query Frame = 0
Query:   12 QDEAADKLIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTSENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGKNSKVEVKVKIAHEGEVNRARYMPQNPFVVATKAPSADVFVFDITKHPSEPGPNDGF-RPEHICKGHAREGYGLAWSPHKAGNLLSGSDDARICLWD--VTEAGKVVNDVTVFRGHTSVVEDV-XXXXXXXXXXXXXXXXXXXXXXXXXESPEKPMNRREDAHGAFINCLSFSPHSEFLLLTGSADHMVALWDMRSLTKPLHLFEGHRDEVFQVDWAPFHESVFSSCGADRRVNVWDVSKIGEEQSPEDAEDGPPELLFIHGGHTAKVSDVSWNAEDPWVMASVAEDNILQVWQMADNIY 412
            + E  ++LI EEYKIWKKN+PFLYDLV+THALEWPSLTVQWLPG +      +Y+  K++ GTHT+  E N+L+ A V LPL D E DA++Y+DE GE+GGFG  + KV++  +I H+GEVNRARYMPQN F++ATK  SA+V++FD +KHPS+P P DG   P+   +GH  EGYGL+WSP K G+LLSGSDDA++CLWD  VT   KV++   VF+ H  VVEDV                           + +KP+ ++  AH   +NCL+F+P +E+++ TGS D  V L+D+R L+  LH F+ H++EVFQV W+P +E++ +SC   RR+ VWD+S+I EEQ+PEDAEDGPPELLFIHGGHT+K+SD SWN  + WV+ASVAEDNILQ+WQMA+NIY
Sbjct:    9 RSEVEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPG-RDEPPGKDYSVQKMILGTHTSDNEPNHLMLAQVQLPLEDAENDARQYDDEHGEIGGFGCASGKVQIIQQINHDGEVNRARYMPQNSFIIATKTVSAEVYIFDYSKHPSKP-PIDGVCNPDLRLRGHNSEGYGLSWSPFKQGHLLSGSDDAQMCLWDINVTPKNKVLDAHRVFKIHEGVVEDVAWHLRHEHLFGSVGDDHYLLIWDLRTPTADKPI-QQVVAHQGEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKLSTALHTFDSHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIY 409          
BLAST of NO22G00840 vs. NCBI_GenBank
Match: XP_020572556.1 (WD-40 repeat-containing protein MSI1 [Phalaenopsis equestris])

HSP 1 Score: 450.3 bits (1157), Expect = 7.000e-123
Identity = 214/404 (52.97%), Postives = 283/404 (70.05%), Query Frame = 0
Query:   10 DTQDEAADKLIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTSENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGKNSKVEVKVKIAHEGEVNRARYMPQNPFVVATKAPSADVFVFDITKHPSEPGPNDGFRPEHICKGHAREGYGLAWSPHKAGNLLSGSDDARICLWDV--TEAGKVVNDVTVFRGHTSVVEDVXXXXXXXXXXXXXXXXXXXXXXXXXESPEKPMNRREDAHGAFINCLSFSPHSEFLLLTGSADHMVALWDMRSLTKPLHLFEGHRDEVFQVDWAPFHESVFSSCGADRRVNVWDVSKIGEEQSPEDAEDGPPELLFIHGGHTAKVSDVSWNAEDPWVMASVAEDNILQVWQMADNIY 412
            D + E  ++LI EEYKIWKKN+PFLYDLV+THALEWPSLTVQWLP  +      +Y+  K++ GTHT+  E NYL+ A V LPL D E DA++Y++ERGE+GGFG  + KV++  +I HEGEVNRAR+MPQNPF++ATK  SADV+VFD +KHPS+P  +    P+   KGH  EGYGL+WS  K G+LLSGSDDA+ICLWD+  +   K ++ + +F+ H  VVEDV                                 +   AH   +NCL+F+P +E+++ TGS D  V L+D+R ++  LH F+ H++EVFQV W+P +E++ +SC   RR+ VWD+S+I EEQ+PEDAEDGPPELLFIHGGHT+K+SD SWN  + WV+ASVAEDNILQ+WQMA+NIY
Sbjct:    7 DFRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPD-REEPPGKDYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAENDARQYDEERGEIGGFGCASGKVQIIQQINHEGEVNRARHMPQNPFIIATKTVSADVYVFDYSKHPSKPPLDGACNPDLRLKGHTTEGYGLSWSLFKQGHLLSGSDDAQICLWDINGSPKNKSLDALQIFKVHDGVVEDVAWHLRHEYLFGSVGDDQHLLIWDLRSPTANKPVQSVIAHQGEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKISTALHTFDCHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIY 409          
The following BLAST results are available for this feature:
BLAST of NO22G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21435.11.900e-16074.51retinoblastoma binding protein 4 [Nannochloropsis ... [more]
XP_005853921.17.100e-16074.27retinoblastoma binding protein 4, partial [Nannoch... [more]
OWK12628.12.800e-13256.72hypothetical protein Celaphus_00014920 [Cervus ela... [more]
XP_004740959.11.400e-12855.47PREDICTED: histone-binding protein RBBP4 isoform X... [more]
XP_004740960.11.400e-12855.47PREDICTED: histone-binding protein RBBP4 isoform X... [more]
PKA46760.15.700e-12554.46WD-40 repeat-containing protein MSI1 [Apostasia sh... [more]
XP_017946704.12.400e-12354.34PREDICTED: histone-binding protein RBBP4 isoform X... [more]
XP_018422069.13.100e-12354.34PREDICTED: histone-binding protein RBBP4 isoform X... [more]
XP_010923692.14.100e-12354.21PREDICTED: histone-binding protein MSI1 isoform X1... [more]
XP_020572556.17.000e-12352.97WD-40 repeat-containing protein MSI1 [Phalaenopsis... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004179NSK004179Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00840.1NO22G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625863gene_7082Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100307g2gene8992Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00840.1NO22G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00840 ID=NO22G00840|Name=NO22G00840|organism=Nannochloropsis oceanica|type=gene|length=1802bp
ATGGCGGAAGTCGACCCCCGCATCCAGGACACGCAGGATGAAGCCGCAGA
CAAGCTCATTGCCGAGGAGTATAAgtaagtaatatgttatatttaggtag
tgttggtgtctttacctgcgcgccctggaatgaatggatgcgtgggtggg
gtacggcctgtttgtgcaccctgtgctaatctgccatgatacgatggtct
taccttacccatggcccgtccggtgtgtgtagtcaggattgctctcagta
gcatctgcagcctgaagggctactagatgcggcgtttgtgcagccctccc
catcttatcccacccttttccattctttccatcttccctatctgcttcgc
gccagAATTTGGAAGAAGAATTCCCCCTTCCTCTACGACCTAGTCATGAC
CCACGCCTTGGAGTGGCCATCTCTAACAGTGCAGTGGCTGCCTGGCGTCA
AGACTTCGGAGAACAATCCTGAGTATGCGACACACAAACTTTTGTTCGGG
ACGCACACAGCCGCGGgtacgaatggagggatgggatagggaggagaaag
ggaaggaatgtggcatagttgtgactattttctctgctcttctctctctc
catatctacatgagcatataattgactatttctcacctagggacagacgt
aattgttaattgttgtgtcagtcgtatccttacccactaccaccctgccc
gactccaaccccagGCGAGCAAAACTACCTAATTCAAGCCAATGTCAACC
TCCCCCTGCCCGATACCGAAATTGACGCCAAAAAATATGAAGACGAACGA
GGGGAAGTCGGTGGATTCGGGGGTAAAAACAGCAAAGTTGAAGTAAAGGT
CAAGATCGCGCACGAAGGTGAAGTGAATCGCGCGCGTTACATGCCCCAAA
ACCCTTTTGTAGTCGCGACCAAGGCACCGAGCGCCGATGTCTTTGTCTTT
GACATAACCAAGCATCCATCTGAGCCTGGACCGAATGATGGATTTCGGCC
CGAGCATATCTGCAAAGGGCACGCGAGGGAGGGGTATGGCCTGGCCTGGT
CACCGCATAAGGCGGGGAACCTGTTGAGTGGGAGCGATGATGCGCGCATT
TGTTTGTGGGATGTAACGGAGGCTGGGAAGGTCGTCAATGACGTCACTGT
GTTTAGGGGGCATACAAGCGTGGTGGAAGATGTCGCTTGGCATGCATCAC
ACCCATATTTGTTTGGGTCCGTGAGCGATGACAAGAGTTTGGCTCTCTGG
GACTTGAGAGAGAGTCCAGAGAAACCCATGAATCGTCGCGAGGACGCCCA
TGGCGCGTTTATCAATTGTTTGTCGTTTTCCCCGCACTCGGAATTCTTGT
TATTGACGGGCTCGGCGGATCATATGGTGGCGCTGTGGGATATGCGCAGT
TTAACAAAGCCATTGCACTTGTTCGAGGGGCACCGGGACGAGGTCTTCCA
AGTCGATTGGGCCCCGTTCCATGAGTCTGTATTCTCATCATGTGGGGCCG
ATCGGCGGGTGAACGTTTGGGATGTGTCTAAGATTGGGGAGGAACAGAGC
CCGGAGGACGCGGAAGATGGCCCGCCGGAATTACTGTTTATCCACGGGGG
GCATACGGCGAAGGTGTCCGATGTGAGCTGGAACGCGGAGGATCCCTGGG
TGATGGCTAGTGTGGCTGAAGACAACATTTTGCAGGTCTGGCAGATGGCG
GACAACATCTATTTGGCCGAGGATGAAGAGGAAGAGATGAGTGGGGGAGG
GGGGGGGTTAAAGGATGATGACTTGGAGGCGCCGGGTGTGGGGGTGAAGT
AG
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protein sequence of NO22G00840.1

>NO22G00840.1-protein ID=NO22G00840.1-protein|Name=NO22G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MAEVDPRIQDTQDEAADKLIAEEYKIWKKNSPFLYDLVMTHALEWPSLTV
QWLPGVKTSENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDA
KKYEDERGEVGGFGGKNSKVEVKVKIAHEGEVNRARYMPQNPFVVATKAP
SADVFVFDITKHPSEPGPNDGFRPEHICKGHAREGYGLAWSPHKAGNLLS
GSDDARICLWDVTEAGKVVNDVTVFRGHTSVVEDVAWHASHPYLFGSVSD
DKSLALWDLRESPEKPMNRREDAHGAFINCLSFSPHSEFLLLTGSADHMV
ALWDMRSLTKPLHLFEGHRDEVFQVDWAPFHESVFSSCGADRRVNVWDVS
KIGEEQSPEDAEDGPPELLFIHGGHTAKVSDVSWNAEDPWVMASVAEDNI
LQVWQMADNIYLAEDEEEEMSGGGGGLKDDDLEAPGVGVK*
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Synonyms
Publications