NO22G00830, NO22G00830 (gene) Nannochloropsis oceanica

Overview
NameNO22G00830
Unique NameNO22G00830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length633
Alignment locationchr22:270594..271226 +

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Properties
Property NameValue
DescriptionCyclase dehydrase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:270594..271226 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019587Polyketide_cyclase/dehydratase
Homology
BLAST of NO22G00830 vs. NCBI_GenBank
Match: XP_005855987.1 (cyclase dehydrase, partial [Nannochloropsis gaditana CCMP526] >EKU20372.1 cyclase dehydrase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 209.1 bits (531), Expect = 1.300e-50
Identity = 145/181 (80.11%), Postives = 154/181 (85.08%), Query Frame = 0
Query:   30 PPSPSISISSSSPLHTNSRTTRLQSWVDTKVEIEVPASPADCYALYSQLEEHPRWSPWLRSVQFLDKVGRISEWTLESRGFTVAWKARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISYRVPKPIAKLGDVKLVKKYIEATLTSDLTTFKKVLLKEIREARIEASGGLDE 211
            PP PS+  S  S     SR   L SWVDTKVEIEVPA+P  CYALYSQLEEHPRWSPWLRSVQFLDKV RISEWTLESRGFTVAWKA+NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     TISY VPKPIAKLGDV LVK+YIE+TL SDLT +++VL+KEIRE RIEASGGLDE
Sbjct:   64 PPIPSVGASPISYTRQPSRLI-LSSWVDTKVEIEVPATPEACYALYSQLEEHPRWSPWLRSVQFLDKVERISEWTLESRGFTVAWKAQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSMALTISYSVPKPIAKLGDVGLVKRYIESTLQSDLTRYRQVLMKEIREKRIEASGGLDE 243          
BLAST of NO22G00830 vs. NCBI_GenBank
Match: EWM21432.1 (START-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 209.1 bits (531), Expect = 1.300e-50
Identity = 145/181 (80.11%), Postives = 154/181 (85.08%), Query Frame = 0
Query:   30 PPSPSISISSSSPLHTNSRTTRLQSWVDTKVEIEVPASPADCYALYSQLEEHPRWSPWLRSVQFLDKVGRISEWTLESRGFTVAWKARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISYRVPKPIAKLGDVKLVKKYIEATLTSDLTTFKKVLLKEIREARIEASGGLDE 211
            PP PS+  S  S     SR   L SWVDTKVEIEVPA+P  CYALYSQLEEHPRWSPWLRSVQFLDKV RISEWTLESRGFTVAWKA+NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     TISY VPKPIAKLGDV LVK+YIE+TL SDLT +++VL+KEIRE RIEASGGLDE
Sbjct:  135 PPIPSVGASPISYTRQPSRLI-LSSWVDTKVEIEVPATPEACYALYSQLEEHPRWSPWLRSVQFLDKVERISEWTLESRGFTVAWKAQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSMALTISYSVPKPIAKLGDVGLVKRYIESTLQSDLTRYRQVLMKEIREKRIEASGGLDE 314          
BLAST of NO22G00830 vs. NCBI_GenBank
Match: CBN73792.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.0 bits (193), Expect = 2.000e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 0
Query:   54 SWVDTKVEIEVPASPADCYALYSQLEEHPRWSPWLRSVQFLDKVGRISEWTLESRGFTVAWKARN 119
            +W+D +V +EVPAS  D Y+LYS L+  P WSPWL+SVQ  D+    S+W ++S G  V+W A+N
Sbjct:   56 AWIDEQVSLEVPASTQDAYSLYSDLQRQPEWSPWLKSVQH-DRATGTSKWVIQSNGIKVSWNAQN 119          
BLAST of NO22G00830 vs. NCBI_GenBank
Match: XP_005703046.1 (cyclase/dehydrase [Galdieria sulphuraria] >EME26526.1 cyclase/dehydrase [Galdieria sulphuraria])

HSP 1 Score: 77.8 bits (190), Expect = 4.500e-11
Identity = 49/167 (29.34%), Postives = 71/167 (42.51%), Query Frame = 0
Query:   40 SSPLHTNSR----------TTRLQSWVDTKVEIEVPASPADCYALYSQLEEHPRWSPWLRSVQFLDKVGRISEWTLESRGFTVAWKARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISYRVPKPIAKLGDVKLVKKYIEATLTSDLTTFKKVLLKE 197
            S+P+ T SR           T    W+   V+++V       + LYS LE+ P WSPWLRSVQ   K   I+ W L +RG +V+W++RN                                     T+ Y+VP+ +  L     V K++E TL  DL  F+   L+E
Sbjct:   33 STPVWTRSRYPASVPCLLFATNEGEWLGHTVKLDVQVPSWLAFDLYSDLEKMPSWSPWLRSVQVDPKQPEIATWNLSARGLSVSWRSRNTRVERPHIIAWESLEGLPNRGSVQFQEKGDNCTQVELTVEYKVPRFLKVLLSNSFVGKFVERTLLEDLKRFRLCALRE 199          
BLAST of NO22G00830 vs. NCBI_GenBank
Match: WP_017326390.1 (hypothetical protein [Synechococcus sp. PCC 7336])

HSP 1 Score: 75.9 bits (185), Expect = 1.700e-10
Identity = 42/136 (30.88%), Postives = 64/136 (47.06%), Query Frame = 0
Query:   55 WVDTKVEIEVPASPADCYALYSQLEEHPRWSPWLRSVQFLDKVGRISEWTLESRGFTVAWKARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISYRVPKPIAKLGDVKLVKKYIEATLTSDLTTFK 191
            W++   +I+VPAS    ++L+S LE+ PRW  W+ SVQ LD  G +S WTL SRGFT  W ++                                      +I+Y VP  +A +  +  + + +E+TL +DL  FK
Sbjct:    5 WLEHTCQIQVPASIDRVWSLWSNLEQLPRWMKWISSVQTLD--GDLSRWTLSSRGFTFNWTSKTHTVIHQQRIEWESVDGLHNRGCLRFYDRKADGTIVRLSIAYSVPGWLAAILQIPFIDRIVESTLQADLERFK 138          
BLAST of NO22G00830 vs. NCBI_GenBank
Match: WP_011431100.1 (MULTISPECIES: membrane protein [Synechococcus] >ABD00427.1 putative cyclase/dehydrase [Synechococcus sp. JA-3-3Ab] >PIK87486.1 membrane protein [Synechococcus sp. 63AY4M2] >PIK89622.1 membrane protein [Synechococcus sp. 65AY6A5] >PIK93189.1 membrane protein [Synechococcus sp. 65AY6Li] >PIK96501.1 membrane protein [Synechococcus sp. 60AY4M2] >PIK99099.1 membrane protein [Synechococcus sp. 63AY4M1] >PIL02456.1 membrane protein [Synechococcus sp. 65AY640])

HSP 1 Score: 71.2 bits (173), Expect = 4.200e-9
Identity = 41/153 (26.80%), Postives = 69/153 (45.10%), Query Frame = 0
Query:   55 WVDTKVEIEVPASPADCYALYSQLEEHPRWSPWLRSVQFLDKVGRISEWTLESRGFTVAWKARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISYRVPKPIAKLGDVKLVKKYIEATLTSDLTTFKKVLLKEIREARIEASGG 208
            W++   ++EVP      + L++ L   PRW  W+RSV+ LD+   +S WTL++RG T +W +R                                      +++Y++P  + K+ D   V K +E+T+ +DL  FK   L++   A   AS G
Sbjct:    6 WLEHTCQVEVPVPIEQVWELWANLALMPRWMKWIRSVELLDQ--ELSRWTLDTRGLTFSWISRT-HTVVKHQHIGWQSVEGLPNRGALRFYDRKGSTIVKLSVAYKIPGLLGKILDGLFVGKVVESTIQADLERFKAYALEQAGRAADNASAG 155          
BLAST of NO22G00830 vs. NCBI_GenBank
Match: OSX72755.1 (hypothetical protein BU14_0407s0019 [Porphyra umbilicalis])

HSP 1 Score: 71.2 bits (173), Expect = 4.200e-9
Identity = 69/175 (39.43%), Postives = 92/175 (52.57%), Query Frame = 0
Query:   54 SWVDTKVEIEVPASPADCYALYSQLEEHPRWSPWLRSVQFLDKVGRISEWTLESRGFTVAWKARN----------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISYRVPKPIAKLGDVKLVKKYIEATLTSDLTTFKKVLLKEIRE-ARIEAS 206
            +W++    + V A    CY ++S LE  P+WSPWL+SVQ       +S W+L SRG  V+W+ARN                            XXXXXXXXXXXXXXXXXXXX            IS+ VP  IA +     V +Y+E TL +DL  ++ V+LKE+R  AR +A+
Sbjct:   52 TWIEKSATVTVEAPRDFCYTIFSDLEAQPKWSPWLKSVQVDPVDPDLSRWSLASRGVEVSWQARNTSVIRPEVIAWESLDGLPNKGAVTFVDAXXXXXXXXXXXXXXXXXXXXRAQRPVTEVTLAISFDVPAFIAAVLKSDAVGQYVEQTLLADLKRYRAVVLKEVRAVARAKAA 226          
BLAST of NO22G00830 vs. NCBI_GenBank
Match: OUC14020.1 (hypothetical protein B0A82_14360 [Alkalinema sp. CACIAM 70d])

HSP 1 Score: 68.2 bits (165), Expect = 3.600e-8
Identity = 37/150 (24.67%), Postives = 65/150 (43.33%), Query Frame = 0
Query:   52 LQSWVDTKVEIEVPASPADCYALYSQLEEHPRWSPWLRSVQFLDKVGRISEWTLESRGFTVAWKARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISYRVPKPIAKLGDVKLVKKYIEATLTSDLTTFKKVLLKEIREAR 202
            +  W++  V++E+P S    ++L+S LE+ P W  W+ SV+       +S W L S GF  +W+++                                      T++Y VP  I +L D   + K +E++L +D+  F+   LK+ R  R
Sbjct:    1 MSDWLEHTVQVEIPTSIEHVWSLWSDLEQMPNWMKWIDSVKVRPDNPDLSVWKLASGGFEFSWQSKIVRQIHNQIIQWESVDGLPNKGAIRFYDRGAEGSIVKLTVAYSVPTVIRQLMDGLALGKVVESSLQADMNRFRDYALKDARSGR 150          
BLAST of NO22G00830 vs. NCBI_GenBank
Match: WP_011432946.1 (membrane protein [Synechococcus sp. JA-2-3B'a(2-13)] >ABD02296.1 cyclase/dehydrase family protein [Synechococcus sp. JA-2-3B'a(2-13)])

HSP 1 Score: 67.8 bits (164), Expect = 4.600e-8
Identity = 40/151 (26.49%), Postives = 68/151 (45.03%), Query Frame = 0
Query:   55 WVDTKVEIEVPASPADCYALYSQLEEHPRWSPWLRSVQFLDKVGRISEWTLESRGFTVAWKARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISYRVPKPIAKLGDVKLVKKYIEATLTSDLTTFKKVLLKEIREARIEAS 206
            W++   ++EVP      + L++ L   PRW  W+RSV+ LD+   +S WTL++RG T +W +R                                      +++Y++P  + K+ D   V K +E+T+ +DL  FK   L++   A   AS
Sbjct:    6 WLEHTCQVEVPVPIEQVWDLWANLTLMPRWMKWIRSVELLDQ--ELSRWTLDTRGLTFSWISRT-HTVVKHQHIGWSSVEGLPNRGALRFYDRKGSTIVKLSVAYKIPGILGKILDGLFVGKVVESTIQADLERFKAYALEQAGPAADNAS 153          
BLAST of NO22G00830 vs. NCBI_GenBank
Match: WP_016872385.1 (membrane protein [Chlorogloeopsis fritschii])

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-7
Identity = 40/150 (26.67%), Postives = 67/150 (44.67%), Query Frame = 0
Query:   52 LQSWVDTKVEIEVPASPADCYALYSQLEEHPRWSPWLRSVQFLDKVGRISEWTLESRGFTVAWKARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISYRVPKPIAKLGDVKLVKKYIEATLTSDLTTFKKVLLKEIREAR 202
            +  W++  V++EV A     ++L+S LE+ PRW  W+ SV+  +    IS W L++ G    WK+R                                      T+ Y +P  I K+ D   + K +E+TL +D+  FK+ +LK  +E+R
Sbjct:    1 MSDWLEHSVQVEVEAPIDVVWSLWSDLEQMPRWMKWIDSVKVPEDNPEISIWKLKTGGLEFTWKSR-ILKVIPNQIIQWESVDGLPNRGAIRFYDRHNTSIVKLTVGYAIPGIIGKIMDNLFLGKVVESTLLADMERFKEYVLKVKQESR 149          
The following BLAST results are available for this feature:
BLAST of NO22G00830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855987.11.300e-5080.11cyclase dehydrase, partial [Nannochloropsis gadita... [more]
EWM21432.11.300e-5080.11START-like domain protein [Nannochloropsis gaditan... [more]
CBN73792.12.000e-1149.23conserved unknown protein [Ectocarpus siliculosus][more]
XP_005703046.14.500e-1129.34cyclase/dehydrase [Galdieria sulphuraria] >EME2652... [more]
WP_017326390.11.700e-1030.88hypothetical protein [Synechococcus sp. PCC 7336][more]
WP_011431100.14.200e-926.80MULTISPECIES: membrane protein [Synechococcus] >AB... [more]
OSX72755.14.200e-939.43hypothetical protein BU14_0407s0019 [Porphyra umbi... [more]
OUC14020.13.600e-824.67hypothetical protein B0A82_14360 [Alkalinema sp. C... [more]
WP_011432946.14.600e-826.49membrane protein [Synechococcus sp. JA-2-3B'a(2-13... [more]
WP_016872385.11.000e-726.67membrane protein [Chlorogloeopsis fritschii][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004181NSK004181Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00830.1NO22G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595547gene_7081Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100307g1gene8993Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00830.1NO22G00830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00830 ID=NO22G00830|Name=NO22G00830|organism=Nannochloropsis oceanica|type=gene|length=633bp
ATGTCATCATCACGTGTCACCACTCCTCCCCTTCTCCTCGTCATCCTCCT
TCAGTACCTTTTCCTCGTCACGTCGGCCTTCCTCGCGCCACCTTCTCCTT
CCATCTCCATCTCCTCATCCTCCCCCCTCCACACAAATTCAAGGACCACC
CGTCTTCAGTCGTGGGTCGACACGAAGGTTGAAATCGAAGTGCCTGCCTC
GCCCGCCGATTGCTACGCCCTTTACTCCCAACTAGAAGAACACCCACGCT
GGTCTCCCTGGTTGCGTTCCGTGCAGTTTCTGGATAAAGTGGGGCGGATC
TCGGAATGGACGTTGGAGTCGCGTGGTTTTACTGTCGCCTGGAAAGCACG
CAATACGATTGAAAACCCCGGGGAGTGTATTAGCTGGGAGAGTATGACGG
GCTTGCCAAATAAGGGATTGGTGACATTTGAGGAGCGCAAGCCTGGGATG
ACAAACATGGCGTTAACAATTTCCTACAGAGTGCCGAAGCCGATAGCGAA
ATTGGGAGATGTGAAGTTGGTGAAGAAGTATATTGAGGCGACCTTGACGA
GTGATTTGACGACGTTTAAGAAGGTGTTGTTGAAGGAAATTAGAGAAGCA
AGGATAGAGGCAAGTGGGGGACTGGATGAGTGA
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protein sequence of NO22G00830.1

>NO22G00830.1-protein ID=NO22G00830.1-protein|Name=NO22G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MSSSRVTTPPLLLVILLQYLFLVTSAFLAPPSPSISISSSSPLHTNSRTT
RLQSWVDTKVEIEVPASPADCYALYSQLEEHPRWSPWLRSVQFLDKVGRI
SEWTLESRGFTVAWKARNTIENPGECISWESMTGLPNKGLVTFEERKPGM
TNMALTISYRVPKPIAKLGDVKLVKKYIEATLTSDLTTFKKVLLKEIREA
RIEASGGLDE*
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Synonyms
Publications