NO22G00810, NO22G00810 (gene) Nannochloropsis oceanica

Overview
NameNO22G00810
Unique NameNO22G00810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1335
Alignment locationchr22:266313..267647 -

Link to JBrowse

Properties
Property NameValue
DescriptionRing finger protein 10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:266313..267647 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO22G00810 vs. NCBI_GenBank
Match: EWM21422.1 (ring finger protein 10 [Nannochloropsis gaditana])

HSP 1 Score: 135.2 bits (339), Expect = 4.500e-28
Identity = 116/157 (73.89%), Postives = 125/157 (79.62%), Query Frame = 0 
Query:    1 MRCLMAEAEGIHDRLPRRVYGRVLEIEKMILTPELRGRYSFLRHLPLYCHVQLVELALPPSLLSSPTYETFKSE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEVRAIQARREKGVDLNGPLPWQAALMVEGG---REGGLGE 154
            MRCLMAEA G H  LP+ V G VLE E ++LTPELRGRY FL+HLPLY  V+LVELALPP+LLS PT E FK E   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   EE+R IQA+REKGVDLNGP PW+AA MV GG    E G GE
Sbjct:   54 MRCLMAEAGGRHALLPQVVEGTVLEAETLVLTPELRGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTEEEIRRIQAQREKGVDLNGPQPWEAARMVSGGDRWEEAGEGE 210
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BLAST of NO22G00810 vs. NCBI_GenBank
Match: XP_005855295.1 (hypothetical protein NGA_0127100 [Nannochloropsis gaditana CCMP526] >EKU21073.1 hypothetical protein NGA_0127100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 104.4 bits (259), Expect = 8.400e-19
Identity = 103/147 (70.07%), Postives = 110/147 (74.83%), Query Frame = 0 
Query:    1 MRCLMAEAEGIHDRLPRRVYGRVLEIEKMILTPELRGRYSFLRHLPLYCHVQLVELALPPSLLSSPTYETFKSE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEVRAIQARREKGVDLNGPLPWQAALMVEGG 147
            MRCLMAEA G H  LP+ V G V             GRY FL+HLPLY  V+LVELALPP+LLS PT E FK E   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   EE+R IQA+REKGVDLNGP PW+AA MV GG
Sbjct:    1 MRCLMAEAGGRHALLPQVVEGTVFGGGD-------PGRYGFLKHLPLYSSVKLVELALPPALLSPPTLELFKPEMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTEEEIRRIQAQREKGVDLNGPQPWEAARMVSGG 140
The following BLAST results are available for this feature:
BLAST of NO22G00810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21422.14.500e-2873.89ring finger protein 10 [Nannochloropsis gaditana][more]
XP_005855295.18.400e-1970.07hypothetical protein NGA_0127100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004182NSK004182Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00810.1NO22G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640483gene_7080Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100147g2gene8995Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00810.1NO22G00810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00810 ID=NO22G00810|Name=NO22G00810|organism=Nannochloropsis oceanica|type=gene|length=1335bp
ATGCGGTGCTTGATGGCTGAAGCTGAGGGAATCCATGACCGACTGCCACG
GCGCGTATATGGGAGGGTGCTGGAAATCGAAAAGATGATTCTGACGCCTG
AATTGCGAGgtgagtcctcttgttcccttcctcccttttccctctgctcc
ctcggtcaggcgtgcccttgccggtcatgactggcgtgttggacaacggc
atattcacatatctgtccttcatccctccccccttctttcctttcttttt
cagGCCGCTACTCCTTCTTGAGGCATCTCCCACTCTACTGCCACGTCCAG
CTTGTCGAGCTGGCCCTTCCTCCCTCCCTTCTCTCCTCTCCTACCTACGA
GACCTTCAAAAGTGAAATCAAAAAACGCGCCCAGCGCCGCAAGCAAAAGG
GAAAAGCCGAAGAACGAAGAGAAGAAGCAGCAGCAGCTGCTGCAGCAAGG
AAGGGAGGAAGGGAGGGAGGGAGGGAGGGCTTGACGGAGGAAGAGGTGAG
GGCGATCCAGGCAAGGAGGGAGAAAGGGGTTGATTTAAATGGACCTCTCC
CTTGGCAAGCAGCTTTGATGGTTGAGGGAGGGAGGGAAGGAGGGCTGGGA
GAGCAGGTGGAGGAGAGATTAGATGATCAGGGGGGAGTGAGTAGTGGGAG
TTCATCGGAGGGAGGGAGGGAGGGAGTTAATGAAGGAGGGAGGGGGGGGG
TGGGATCGTTTGCCGAGGTGATTAGGAAGAAGAGCGGTCCGTCGAGGGAA
GAGATGTTTCCGGCTTTGAGTGCTGGAGGAGGAAATGGGGTAGGGAGGGG
GGGTCTAGGGCCAGTGTTGGCGAGTTCTTCATCGGTGGGTGGAGCTTTTT
GGGGAGCTATGTCCTCTTCCCCTCCTGCAACCTCTGCTACTGCAAGTGCA
TGGGGTGCTCCTACAGCAGTTGCTGCTGCTCCACCTGTTGTTGCTGCAAG
AGGATTGAACCCCTCGTCCTCTTCCTCCTCCTTCTCTTCATCCTCGTTAT
TATTGCCGAGCAGGAGTCCTGATGGTGCTGGTCGAGTTGGACGAGGGGGG
GAAGGAGGAGGAGGGGGAGGAGGAAATAGATGGGCGGCTAGAAGCCCTCT
TGCTGTCTCGTCCTCTCCACCTTTCTCAAGCCTGGACGCTGGCGCTTGGT
CTGCTGCCAGAGGATGGGGCGGAGGAGCGTCCTCTTCCACGGTAGAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCA
ACAGCAGCAGCAGAGGAAAAAGGGGAAAGGGGGTGGCAAAGGCGTGCCCA
TCTTTTCGACGGGCTCGCAACGCAGCTATGGTTAA
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protein sequence of NO22G00810.1

>NO22G00810.1-protein ID=NO22G00810.1-protein|Name=NO22G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MRCLMAEAEGIHDRLPRRVYGRVLEIEKMILTPELRGRYSFLRHLPLYCH
VQLVELALPPSLLSSPTYETFKSEIKKRAQRRKQKGKAEERREEAAAAAA
ARKGGREGGREGLTEEEVRAIQARREKGVDLNGPLPWQAALMVEGGREGG
LGEQVEERLDDQGGVSSGSSSEGGREGVNEGGRGGVGSFAEVIRKKSGPS
REEMFPALSAGGGNGVGRGGLGPVLASSSSVGGAFWGAMSSSPPATSATA
SAWGAPTAVAAAPPVVAARGLNPSSSSSSFSSSSLLLPSRSPDGAGRVGR
GGEGGGGGGGNRWAARSPLAVSSSPPFSSLDAGAWSAARGWGGGASSSTV
EQQQQQQQQQQQQQQQQQQQQQQRKKGKGGGKGVPIFSTGSQRSYG*
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Synonyms
Publications