NO22G00520, NO22G00520 (gene) Nannochloropsis oceanica

Overview
NameNO22G00520
Unique NameNO22G00520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length687
Alignment locationchr22:173442..174128 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:173442..174128 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO22G00520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004227NSK004227Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00520.1NO22G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595420gene_7049Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100215g4gene9027Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00520.1NO22G00520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00520 ID=NO22G00520|Name=NO22G00520|organism=Nannochloropsis oceanica|type=gene|length=687bp
ATGCCGTCCACAACCAGCACCACCATTTCAACCAGAAATGGACCTTCCAC
CACTATCGACACAACTCCAGCCTCCTCCGTCTCCTTCTCGTCCTCGTCCT
CCTCCTCCGTCCCTACCTCCGCCACCAACACCAGCCCAACCAAACATCCT
GCTGCTGCGGGCGCCACGCCCTCGCCCTCCCCTCCCAAGAGCAAACTACC
CTTCAACCCCTACCGTCACTCCCCCACTCCCTCCTCGTCCTCTATGACAC
CCTCCTCTTCCCCCTCAAGGCATGATCGCCAAAAGACGAAAAGTAGCCGC
AGCCCCTACCGTCCACCCTCCCACCCTCCCTCCTCTTGCTCCTCTTTCCC
CAACCCTTCCCCTTTTCTCCCCGTCCCCTCCCCTCCACATTATCACCAGC
TCCGCGCCAAAGATGAGGAAACCGGGATTGAGGACGAGCGGGAGGGCAAG
GACGACGTAGAGGAGGACCACGAGTATTTCCGGTTGGGAAAATTTGTATA
TTCATTTACCCTCCTTCTCTTTGGAACTCTGTCGATTTGTTTGTTGATCA
CGGGAGCTTTAATGTTCGGAGATTTCATAGGGAAATGCCTTATGGGAGGC
GGGGCGGGTTTGGTGCTGGTGATGGCGTGTATGCTCATGTGCAGTGGGGG
GGGGAGGGTGGAATGGAGGAGGAGGAGGAGGGAGTGA
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protein sequence of NO22G00520.1

>NO22G00520.1-protein ID=NO22G00520.1-protein|Name=NO22G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MPSTTSTTISTRNGPSTTIDTTPASSVSFSSSSSSSVPTSATNTSPTKHP
AAAGATPSPSPPKSKLPFNPYRHSPTPSSSSMTPSSSPSRHDRQKTKSSR
SPYRPPSHPPSSCSSFPNPSPFLPVPSPPHYHQLRAKDEETGIEDEREGK
DDVEEDHEYFRLGKFVYSFTLLLFGTLSICLLITGALMFGDFIGKCLMGG
GAGLVLVMACMLMCSGGGRVEWRRRRRE*
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Synonyms
Publications