NO22G00500, NO22G00500 (gene) Nannochloropsis oceanica

Overview
NameNO22G00500
Unique NameNO22G00500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1507
Alignment locationchr22:168970..170476 -

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Properties
Property NameValue
DescriptionDynein light chain roadblock-type 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:168970..170476 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004942Dynein_light-rel
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Homology
[Close]
BLAST of NO22G00500 vs. NCBI_GenBank
Match: XP_004997435.1 (dynein light chain roadblock-type 1 [Salpingoeca rosetta] >EGD80874.1 dynein light chain roadblock-type 1 [Salpingoeca rosetta])

HSP 1 Score: 75.1 bits (183), Expect = 1.600e-10
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0 
Query:   16 ALVKDTLKRLQSLPNVQHVLILTKNGVALRSTLSPAATVEKAALITTLCEQATTVVQALGEGGREGXXXGGGLTFLRLCSKGYEVIITPDKDYSLVVVRTRT 118
            A V++TLKR+     V+ ++IL K G+A++STL   AT + A LI+++  QA+ VV+ L            GLTFLRL SK +E+++ PD DY LVV++  T
Sbjct:    3 AEVEETLKRISGHKGVEGIVILNKEGIAIKSTLDQTATTQYAGLISSIAAQASHVVREL--------DPQDGLTFLRLRSKKHEIMVAPDNDYLLVVIQNPT 96
[Close]
BLAST of NO22G00500 vs. NCBI_GenBank
Match: XP_014240457.1 (dynein light chain roadblock-type 2 [Cimex lectularius])

HSP 1 Score: 74.7 bits (182), Expect = 2.100e-10
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 0 
Query:   18 VKDTLKRLQSLPNVQHVLILTKNGVALRSTLSPAATVEKAALITTLCEQATTVVQALGEGGREGXXXGGGLTFLRLCSKGYEVIITPDKDYSLVVVRTRT 118
            V DTLKR+QS   V   +++   GV +++TL    TV+ AALIT LCE+A + V+ L             LTFLR+ SK +E+++ PDKD+ L+VV+  T
Sbjct:    5 VDDTLKRIQSHKGVMGFIVINNEGVPIKTTLDNTTTVQYAALITQLCEKARSAVRDL--------DPTNDLTFLRMRSKKHEIMVAPDKDFMLIVVQAPT 96
[Close]
BLAST of NO22G00500 vs. NCBI_GenBank
Match: XP_018288249.1 (hypothetical protein PHYBLDRAFT_60110 [Phycomyces blakesleeanus NRRL 1555(-)] >OAD70209.1 hypothetical protein PHYBLDRAFT_60110 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 70.9 bits (172), Expect = 3.100e-9
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 0 
Query:   15 PALVKDTLKRLQSLPNVQHVLILTKNGVALRSTLSPAATVEKAALITTLCEQATTVVQALGEGGREGXXXGGGLTFLRLCSKGYEVIITPDKDYSLVVVR 115
            P+ V DTLKRL +   V+ V+IL  +G A+RSTL P  TV+   LI++L +Q  T +  L +           LTFLR+ +K +E++I PD++Y L+VV+
Sbjct:    2 PSEVDDTLKRLSNRKGVKGVVILNGDGQAIRSTLDPELTVKYGRLISSLVQQTRTTISTLDD--------QNDLTFLRVRTKKHEIMIAPDREYLLIVVQ 93
[Close]
BLAST of NO22G00500 vs. NCBI_GenBank
Match: XP_003137383.1 (dynein light chain 2B [Loa loa] >EFO26691.1 dynein light chain 2B [Loa loa])

HSP 1 Score: 70.5 bits (171), Expect = 4.000e-9
Identity = 39/100 (39.00%), Postives = 65/100 (65.00%), Query Frame = 0 
Query:   18 VKDTLKRLQSLPNVQHVLILTKNGVALRSTLSPAATVEKAALITTLCEQATTVVQALGEGGREGXXXGGGLTFLRLCSKGYEVIITPDKDYSLVVVRTRT 118
            V++TLKR+QS  NV  V+++  +G A+RSTL   AT +   L+  LC+++ +V++ L +G  +       LTFLRL ++ +E++I PDKD+ L V++  T
Sbjct:    4 VEETLKRIQSQKNVVGVIVMDSSGRAIRSTLDDEATQQHCVLLHQLCDKSRSVIREL-DGSND-------LTFLRLRTRKHEIMIAPDKDFLLAVIQNIT 95
[Close]
BLAST of NO22G00500 vs. NCBI_GenBank
Match: EJW80216.1 (dynein light chain roadblock-type 2 [Wuchereria bancrofti])

HSP 1 Score: 70.5 bits (171), Expect = 4.000e-9
Identity = 40/100 (40.00%), Postives = 65/100 (65.00%), Query Frame = 0 
Query:   18 VKDTLKRLQSLPNVQHVLILTKNGVALRSTLSPAATVEKAALITTLCEQATTVVQALGEGGREGXXXGGGLTFLRLCSKGYEVIITPDKDYSLVVVRTRT 118
            V++TLKR+QS  NV  V+I+  +G A+RSTL   AT +   L+  LC+++ +V++ L +G  +       LTFLRL ++ +E++I PDKD+ L V++  T
Sbjct:    4 VEETLKRIQSQKNVVGVIIMDSSGRAIRSTLDDEATQQHCILLHQLCDKSKSVIREL-DGSND-------LTFLRLRTRKHEIMIAPDKDFLLAVIQNIT 95
[Close]
BLAST of NO22G00500 vs. NCBI_GenBank
Match: XP_023693588.1 (dynein light chain roadblock-type 1 [Paramormyrops kingsleyae])

HSP 1 Score: 70.5 bits (171), Expect = 4.000e-9
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 0 
Query:   16 ALVKDTLKRLQSLPNVQHVLILTKNGVALRSTLSPAATVEKAALITTLCEQATTVVQALGEGGREGXXXGGGLTFLRLCSKGYEVIITPDKDYSLVVVRTRT 118
            A V++TLKR+Q+   VQ ++I+T  G+ +RSTL  A+TV+ A LI  L  +A   V+ +             LTFLR+ SK  E++I PDKDY L+V++  T
Sbjct:    2 AEVEETLKRIQTQKGVQGIIIVTAEGIPIRSTLDNASTVQYAGLIQQLVMKARVTVREM--------DPQNDLTFLRIRSKKNEIMIAPDKDYFLIVIQNPT 95
[Close]
BLAST of NO22G00500 vs. NCBI_GenBank
Match: XP_002403525.1 (dynein light chain, putative [Ixodes scapularis] >EEC03087.1 dynein light chain, putative [Ixodes scapularis])

HSP 1 Score: 70.1 bits (170), Expect = 5.300e-9
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 0 
Query:   18 VKDTLKRLQSLPNVQHVLILTKNGVALRSTLSPAATVEKAALITTLCEQATTVVQALGEGGREGXXXGGGLTFLRLCSKGYEVIITPDKDYSLVVVRTRTG 119
            V++  K+LQ    V  V++    GV +++TL  A T + A+LIT LC+QA T ++ L          G  LTFLR+ +K +E++I+PDK+Y L+V+   TG
Sbjct:   45 VEEIFKKLQCQKGVLGVVVANNEGVPIKTTLDSATTSQYASLITQLCDQARTTLRDL--------DPGNDLTFLRMRTKKHEIMISPDKNYILIVLHNPTG 137
[Close]
BLAST of NO22G00500 vs. NCBI_GenBank
Match: ORY26003.1 (roadblock-type dynein light chain [Neocallimastix californiae])

HSP 1 Score: 70.1 bits (170), Expect = 5.300e-9
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 0 
Query:   18 VKDTLKRLQSLPNVQHVLILTKNGVALRSTLSPAATVEKAALITTLCEQATTVVQALGEGGREGXXXGGGLTFLRLCSKGYEVIITPDKDYSLVVVR 115
            V++T+KRLQS   V+ ++I+  +G+ +RSTL    TV+ +ALIT L  +A +VV+ L             LTFLR+ SK +E+++ PDK+Y L+V++
Sbjct:    4 VEETIKRLQSHKGVEGIVIVNNDGIPIRSTLDNNLTVQYSALITQLASKARSVVRDL--------DPQNDLTFLRIRSKKHEIMVAPDKEYILIVIQ 92
[Close]
BLAST of NO22G00500 vs. NCBI_GenBank
Match: ORY69208.1 (roadblock-type dynein light chain [Neocallimastix californiae])

HSP 1 Score: 70.1 bits (170), Expect = 5.300e-9
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 0 
Query:   18 VKDTLKRLQSLPNVQHVLILTKNGVALRSTLSPAATVEKAALITTLCEQATTVVQALGEGGREGXXXGGGLTFLRLCSKGYEVIITPDKDYSLVVVR 115
            V++T+KRLQS   V+ ++I+  +G+ +RSTL    TV+ +ALIT L  +A +VV+ L             LTFLR+ SK +E+++ PDK+Y L+V++
Sbjct:    4 VEETIKRLQSHKGVEGIVIVNSDGIPIRSTLDNNLTVQYSALITQLASKARSVVRDL--------DPQNDLTFLRIRSKKHEIMVAPDKEYILIVIQ 92
[Close]
BLAST of NO22G00500 vs. NCBI_GenBank
Match: XP_003064272.1 (flagellar outer dynein arm light chain 7 [Micromonas pusilla CCMP1545] >EEH51894.1 flagellar outer dynein arm light chain 7 [Micromonas pusilla CCMP1545])

HSP 1 Score: 69.7 bits (169), Expect = 6.900e-9
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 0 
Query:   18 VKDTLKRLQSLPNVQHVLILTKNGVALRSTLSPAATVEKAALITTLCEQATTVVQALGEGGREGXXXGGGLTFLRLCSKGYEVIITPDKDYSLVVVR 115
            V++ +KR+ S   V  VLI+   G+ +++TL  A TV+ AALIT    +A  VV AL             LTFLR+ SK +E++I PDKDY+LVV++
Sbjct:    7 VEEAVKRINSHKGVLGVLIINNEGIPIKTTLENAETVQHAALITHFARKARAVVTALDPTNE--------LTFLRVRSKSHEIMIAPDKDYTLVVLQ 95
The following BLAST results are available for this feature:
BLAST of NO22G00500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_004997435.11.600e-1042.16dynein light chain roadblock-type 1 [Salpingoeca r... [more]
XP_014240457.12.100e-1042.00dynein light chain roadblock-type 2 [Cimex lectula... [more]
XP_018288249.13.100e-941.00hypothetical protein PHYBLDRAFT_60110 [Phycomyces ... [more]
XP_003137383.14.000e-939.00dynein light chain 2B [Loa loa] >EFO26691.1 dynein... [more]
EJW80216.14.000e-940.00dynein light chain roadblock-type 2 [Wuchereria ba... [more]
XP_023693588.14.000e-941.18dynein light chain roadblock-type 1 [Paramormyrops... [more]
XP_002403525.15.300e-938.61dynein light chain, putative [Ixodes scapularis] >... [more]
ORY26003.15.300e-940.21roadblock-type dynein light chain [Neocallimastix ... [more]
ORY69208.15.300e-940.21roadblock-type dynein light chain [Neocallimastix ... [more]
XP_003064272.16.900e-942.27flagellar outer dynein arm light chain 7 [Micromon... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004230NSK004230Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00500.1NO22G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672067gene_7047Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00500.1NO22G00500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00500 ID=NO22G00500|Name=NO22G00500|organism=Nannochloropsis oceanica|type=gene|length=1507bp
CAGGCAGGCATTACATAACCCATGGTTGCAACCGCGTCGACAAGCACCAG
CATGCGCCAGGAGCCGGCTCTCGTGAAAGACACTCTCAAACGCCTTCAAA
GCCTTCCGAACGTCCAACACGTCCTCATCCTCACCAAGAATGGCGTGGCC
TTGCGGTCGACCCTTAGTCCGgtacgtgtaccgcaccatcgccacgatcc
ttgtatctctctctttggtctgatgctctgatagagaacgatgtgtcgat
tgcgggcgggtggatcatgactggaggaccttgcatgcctgctccgccgg
tagagaagtgcctggtcttttctttttcctatctccatgttgctgtcacg
tctgtaaggatttttctttactcattccatcattcttcctgtgctatcca
ccatttttccttcaaaatagGCTGCGACCGTGGAAAAAGCTGCTCTGATA
ACAACCCTCTGTGAGCAAGCAACGACGGTTGTGCAGGCCTTGGGAGAAGG
CGGGAGGGAGGGCGGGAGCGAAGGAGGCGGACTGACTTTTTTGCGGCTGT
GCAGCAAAGGCTACGAAGTAATCATAACTCCTGACAAGGATTATTCGTTG
GTGGTGGTCCGCACACGGACGGGTTGAGATAAGTTGGGAAAGAGACAGAA
GGATGTTGACAGGCCAACATTGCACATGAGAAATAACATCACGAACGATG
GTATGTAAGGAATGCACGTGTGGACGGACGCATTCTTTTTTCGTTCGAGT
TAGCAATGGTTTGGACAGAGTGGTCCTGCTTTCGGTCGCTATGGTCGTCG
AGTGCCTTCAGCAGGCGCAACTGCAAGCCACTTATTCATTCCTTCGCTGG
GCTTGATCTTCAGTCATGAAATCCCCACAGGTGTCATAGAGACCGCAATC
TCATGCACGTCACTTGACCATCAGAATCATAAGGTTCAAAAATCAATTTT
AATCGAGCCACAACACCACATTCAAGGCCCCTTTCAAGACATAACCAGAC
CCCATAACAGCCAATATATCACTCTATCTTGATTTATTTATTTGTTTTAC
AATTTTTATTCTACTTTCTTGTTTTTTCCTTTCCCCCCTCCCCTGAAAAC
CCACGCTCCGCTGCCTTATCTACCCTACAAAATCGCTCCATTCGTCGACG
GACGGTTGCTTTTCGAACCTCGACGCAAGAAAGGTAGGAGCGGAGGCCGT
GTTGGAGTCTGTCGGGGGAGAGCCAGGCACAGCGATTATGTGGGGATCTG
CCGGCGGAGGAGGCAATAAGGGGGCTACGATCGAGCCTTGTTCACCGACC
TTTGAGGTCGTCCGCTCCCGCTTTCTCTCCTCTGTGCTCCCCCTGCCGCT
GCCGCTGCCCTCTCCTCGATAAGGTCTGTCAATCGCATGCATAAAATTTA
GCTTGATTTTCTCCCCTTCCTTGAGTCGCAGATCCCCTAGCAATGGTGGT
AGGGACTTTATCTCGCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTTCT
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protein sequence of NO22G00500.1

>NO22G00500.1-protein ID=NO22G00500.1-protein|Name=NO22G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MVATASTSTSMRQEPALVKDTLKRLQSLPNVQHVLILTKNGVALRSTLSP
AATVEKAALITTLCEQATTVVQALGEGGREGGSEGGGLTFLRLCSKGYEV
IITPDKDYSLVVVRTRTG*
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Synonyms
Publications