NO22G00460, NO22G00460 (gene) Nannochloropsis oceanica

Overview
NameNO22G00460
Unique NameNO22G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1222
Alignment locationchr22:160991..162212 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:160991..162212 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO22G00460 vs. NCBI_GenBank
Match: XP_005854702.1 (hypothetical protein NGA_0349102 [Nannochloropsis gaditana CCMP526] >EKU21658.1 hypothetical protein NGA_0349102 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 85.1 bits (209), Expect = 2.400e-13
Identity = 56/121 (46.28%), Postives = 66/121 (54.55%), Query Frame = 0 
Query:   66 SFGLAAAATAFFITPSLLPSS---------SSSWSANAAPTGEIEDLAPPTAAEIEAERVKSKLKRQAETVIQENXXXXXXXXXXXXYGESLKREREKQKLLKKDAAQRRQDLCENLGRGC 178
            +FGL  +  AFF+ P+  P S                          + PT AE EA RVK+KLKRQ E +I EN            YG+SLKREREKQ++LKKDA QRRQDLCE LGRGC
Sbjct:   81 TFGLLTSVAAFFLAPTSFPPSXXXXXXXXXXXXXXXXXXXXXXXXXXSAPTPAEKEAARVKAKLKRQQEALIMEN--AAKGGGDEKNYGDSLKREREKQRMLKKDAKQRRQDLCEQLGRGC 199
[Close]
BLAST of NO22G00460 vs. NCBI_GenBank
Match: EWM21390.1 (hypothetical protein Naga_100215g10 [Nannochloropsis gaditana])

HSP 1 Score: 85.1 bits (209), Expect = 2.400e-13
Identity = 56/121 (46.28%), Postives = 66/121 (54.55%), Query Frame = 0 
Query:   66 SFGLAAAATAFFITPSLLPSS---------SSSWSANAAPTGEIEDLAPPTAAEIEAERVKSKLKRQAETVIQENXXXXXXXXXXXXYGESLKREREKQKLLKKDAAQRRQDLCENLGRGC 178
            +FGL  +  AFF+ P+  P S                          + PT AE EA RVK+KLKRQ E +I EN            YG+SLKREREKQ++LKKDA QRRQDLCE LGRGC
Sbjct:  100 TFGLLTSVAAFFLAPTSFPPSXXXXXXXXXXXXXXXXXXXXXXXXXXSAPTPAEKEAARVKAKLKRQQEALIMEN--AAKGGGDEKNYGDSLKREREKQRMLKKDAKQRRQDLCEQLGRGC 218
The following BLAST results are available for this feature:
BLAST of NO22G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854702.12.400e-1346.28hypothetical protein NGA_0349102 [Nannochloropsis ... [more]
EWM21390.12.400e-1346.28hypothetical protein Naga_100215g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004233NSK004233Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00460.1NO22G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595402gene_7044Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100215g10gene9031Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00460.1NO22G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00460 ID=NO22G00460|Name=NO22G00460|organism=Nannochloropsis oceanica|type=gene|length=1222bp
ACAGCTACAGCCCCTCGTTTTTGTTGCCGCTCCTTGCTTCAGCCCACCAT
CATCACCATGCACCAGGCTGCTGTTCGTCTCACCTTGGCCGTGGCCTTCT
TGAGCTGCTTAGTCCGCAATGTGCATGCATTTTTGCTGCCCACACTTCCT
GTTCAGAGgtatgcattggctttttgtcgacggtgtgagtattctgatcc
cttcatccccctctccccctttgaagatcaaccaacattcatccgtacgc
acttgccttgtgaatgaatgtcgcagcaccacatctacggcccgcaccat
cattatccctctaacccctttctcttcttctcttacctttccaacttttt
ccagGCACTCCACGGCTCTCTTCATGAAGGCCTCCTCCTCCCCCCTGTCG
ACCCGCCGCTCCTCCCTTGCCTCCCGTACGGACCTTCTAAACAAGGCCAG
CTTTGGCCTCGCTGCCGCCGCTACCGCCTTTTTCATAACCCCTTCCTTAC
TCCCTTCCTCGTCCTCGTCCTGGTCTGCCAATGCTGCGCCAACGGGGGAG
ATAGAGGATTTGGCCCCTCCCACCGCCGCCGAGATCGAAGCGGAGCGCGT
CAAGAGCAAGTTGAAGAGACAGGCGGAGACGGTAATCCAAGAGAATGCCG
CGAAAGGTGGAGGAGGCGGAGAGAAGAAAGATTATGGAGAGAGTTTGAAA
AGGGAGAGGGAGAAGCAAAAGCTGCTAAAAAAGGACGCGGCGCAACGACG
GCAAGATTTGTGTGAGAACTTAGGGAGGGGATGTTAGAAAGGAGAAGAGG
GCCCACCGTCCATCCCTTCCCCTATTTTTACGTCCAGGAGGGGTTAAAAG
GGGTAAGAGCATTCACCTTCCATCCCTCCCTTTCTTTGTATGTGGGAAAG
TCGGGGGGGGGGGGGCAACACTGGTGGGGGGGGATACAAGTAGAGAAACG
TGGAGTTAGAAGAGAAGAAAGAGAGGGAGGGCGAGGTGGACAAGCAAAGG
AATTAGATTGATAGGGAAGGATAATATTTATGATACCAGCGACTAAATGA
AGAAGGCTGCCATGGAATACACACAACTTTCCCCCCCGCCCAACACAACG
TAACGAGAGAATCGATAATTAACAAAGGCTAAACAACGCTCACAAAGAAA
ACACTGACGACAACTACAACAACGGCGAGCATGAAGAGAAAGGAAAGACG
AAACAGGCCAACCATACTAATG
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protein sequence of NO22G00460.1

>NO22G00460.1-protein ID=NO22G00460.1-protein|Name=NO22G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MHQAAVRLTLAVAFLSCLVRNVHAFLLPTLPVQRHSTALFMKASSSPLST
RRSSLASRTDLLNKASFGLAAAATAFFITPSLLPSSSSSWSANAAPTGEI
EDLAPPTAAEIEAERVKSKLKRQAETVIQENAAKGGGGGEKKDYGESLKR
EREKQKLLKKDAAQRRQDLCENLGRGC*
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Synonyms
Publications