NO22G00340, NO22G00340 (gene) Nannochloropsis oceanica

Overview
NameNO22G00340
Unique NameNO22G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1494
Alignment locationchr22:136982..138475 -

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Properties
Property NameValue
DescriptionMethylosome protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:136982..138475 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Homology
BLAST of NO22G00340 vs. NCBI_GenBank
Match: EWM21379.1 (methylosome protein [Nannochloropsis gaditana])

HSP 1 Score: 243.0 bits (619), Expect = 1.700e-60
Identity = 184/481 (38.25%), Postives = 231/481 (48.02%), Query Frame = 0
Query:   16 QISAVQTHHDFVAVASSRLEGSTWDGAVTLLRAMAFASSPVVT------LELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLP-LLAAAQDNGDVLLLALKHEG------------VNATLLPTTTLADHDDLVSALAASPE--GD-LLATGGWDCTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVRMEGCKRECLRLVDAQAQMPLALAWA--TSTCPS-------SSSSLLPPSALEGSNAMHIDETPIEKKV----------ENENDVLLSVAFDNGSVSLLDLRML---------RXXXXXXXXXXXXXXXXXXXXKAHKTRVNALAFSPCASXXXXXXXXXXXXXGQVVLTPLGFEEDGKGRRATLASKGGKQEGSGIPIAAHIQHTDYVRGLGWLATAGXXXXXXXXXXXXXXSPLSSLPRPGVLLSGGWDGRLKGWAWGQE 447
            QI  +  H D VAVASSRLEG TW+GA+TL  A   +++   T      L L+R+ V  T+YGIPAL WCGA   + + ++   P LLAA QDNGDV++  +  +G               TL+P TTL DHDD+VSA+AA  E  GD  LATGGWDC VKVW +    V+P+ +WQ H D VT LAWRG  GGRE        +ASAG+D  VKLWD RMEG   E LRLVDA  Q+PLALAW    S+ PS                 LEG     + E P+EK              E +  L V FD+GSV +LDLR+L                              + H+TR NALA + C                + +L   G +    G R     +G  Q+ +  P     +H DYVR L WL  +G              S         VLLSGGWDG ++ W W  E
Sbjct:    5 QICDLCVHDDLVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTTLTDHDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVGMDIVQPMSSWQAHRDHVTDLAWRGREGGRE-XXXXXXXLASAGRDRSVKLWDTRMEG---ESLRLVDAHPQIPLALAWGGNASSLPSXXXXXXXXXXXXXXXXGLEG-----VAEGPLEKLTLISNLNLKWGAGEGEWALCVGFDDGSVEVLDLRLLPREAKCRGRGGRRRGVERSNEASILPSQRYRMHQTRTNALAPASCG----------PGASSEFLLASGGDDGVVTGMRVKAGQEGENQKLASPPSCG--RHADYVRALSWLDLSGKGGGHEKVHPPCIPSQ--------VLLSGGWDGHVRAWTWVDE 456          
BLAST of NO22G00340 vs. NCBI_GenBank
Match: CBN76668.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.9 bits (185), Expect = 3.600e-10
Identity = 61/205 (29.76%), Postives = 95/205 (46.34%), Query Frame = 0
Query:   15 GQISAVQTHHDFVAVASSRLEGSTWDGAVTLLRAMAFASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQDNGDVLLLALKHEGVNATLLPTTTLADHDDLVSALAASPEGD-LLATGGWDCTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVRM-EGC 218
            G++ +V    D + VA+S L G+TWD +   L+ + F++  VV       A      G   + W            +    + +A DNGDV +  +  E   A L+    L +HDD+VS++AAS   D L+ +GG+D +V VW +       L  + GHS  VT + W         G+      AS+  D  V++WD R  +GC
Sbjct:   12 GRVESVDISDDMILVATSNLGGNTWDSS---LQVLDFSTKEVV-------ASVKQQSGCADVCW-----------VKPGRRVVSAGDNGDVKVYKMDEE-APARLVEVANLEEHDDIVSSVAASRSRDGLVLSGGYDRSVNVWDIDSDRDTSLDTFTGHSGYVTGVEW-------SAGQDDSQVFASSSTDCSVRVWDRRQPQGC 187          
BLAST of NO22G00340 vs. NCBI_GenBank
Match: ETK82641.1 (hypothetical protein L915_12020 [Phytophthora parasitica] >ETL36030.1 hypothetical protein L916_11944 [Phytophthora parasitica] >ETP12348.1 hypothetical protein F441_12286 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 73.2 bits (178), Expect = 2.400e-9
Identity = 59/196 (30.10%), Postives = 89/196 (45.41%), Query Frame = 0
Query:   27 VAVASSRLEGSTWDGAVTLLRAMAFASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQDNGDVLLLALKHEGVNATLLPTTTLAD---------HDDLVSALAASPEGDLLATGGWDCTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVR 214
            +AVA S+LEG+ W G V LL A++            RL       G+ +L WC               +LA   D+GDV L  L  +   A +  TT  +D         HDD+V+ ++AS +   LAT  WD TVK+W + G+  + +  + GHSD +  +A               + + SA +D  V++WD R
Sbjct:   42 LAVAQSQLEGNVWSGGVALLDAVS----------NERLCELQLETGVSSLAWCSTEG----------DVLALGCDDGDVRLAKLSTDVTFAFVPLTTGSSDDEDAVSGWGHDDVVTGVSASLDKTQLATCSWDLTVKLWDV-GAMDKTVATFDGHSDLIWGVAM---------NPTHAHILCSASQDSTVQVWDAR 207          
BLAST of NO22G00340 vs. NCBI_GenBank
Match: XP_008908610.1 (hypothetical protein PPTG_13895 [Phytophthora parasitica INRA-310] >ETN06108.1 hypothetical protein PPTG_13895 [Phytophthora parasitica INRA-310])

HSP 1 Score: 73.2 bits (178), Expect = 2.400e-9
Identity = 59/196 (30.10%), Postives = 89/196 (45.41%), Query Frame = 0
Query:   27 VAVASSRLEGSTWDGAVTLLRAMAFASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQDNGDVLLLALKHEGVNATLLPTTTLAD---------HDDLVSALAASPEGDLLATGGWDCTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVR 214
            +AVA S+LEG+ W G V LL A++            RL       G+ +L WC               +LA   D+GDV L  L  +   A +  TT  +D         HDD+V+ ++AS +   LAT  WD TVK+W + G+  + +  + GHSD +  +A               + + SA +D  V++WD R
Sbjct:   42 LAVAQSQLEGNVWSGGVALLDAVS----------NERLCELQLETGVSSLAWCSTEG----------DVLALGCDDGDVRLAKLSTDVTFAFVPLTTGSSDDEDAVSGWGHDDVVTGVSASLDKTQLATCSWDLTVKLWDV-GAMDKTVATFDGHSDLIWGVAM---------NPTHAHILCSASQDSTVQVWDAR 207          
BLAST of NO22G00340 vs. NCBI_GenBank
Match: KUF79055.1 (Methylosome protein 50 [Phytophthora nicotianae] >KUF94793.1 Calcium/calmodulin-dependent protein kinase type 1B [Phytophthora nicotianae])

HSP 1 Score: 73.2 bits (178), Expect = 2.400e-9
Identity = 59/196 (30.10%), Postives = 89/196 (45.41%), Query Frame = 0
Query:   27 VAVASSRLEGSTWDGAVTLLRAMAFASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQDNGDVLLLALKHEGVNATLLPTTTLAD---------HDDLVSALAASPEGDLLATGGWDCTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVR 214
            +AVA S+LEG+ W G V LL A++            RL       G+ +L WC               +LA   D+GDV L  L  +   A +  TT  +D         HDD+V+ ++AS +   LAT  WD TVK+W + G+  + +  + GHSD +  +A               + + SA +D  V++WD R
Sbjct:   42 LAVAQSQLEGNVWSGGVALLDAVS----------NERLCELQLETGVSSLAWCSTEG----------DVLALGCDDGDVRLAKLSTDVTFAFVPLTTGSSDDEDAVSGWGHDDVVTGVSASLDKTQLATCSWDLTVKLWDV-GAMDKTVATFDGHSDLIWGVAM---------NPTHAHILCSASQDSTVQVWDAR 207          
BLAST of NO22G00340 vs. NCBI_GenBank
Match: XP_005758386.1 (hypothetical protein EMIHUDRAFT_107102 [Emiliania huxleyi CCMP1516] >EOD05957.1 hypothetical protein EMIHUDRAFT_107102 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 66.2 bits (160), Expect = 2.900e-7
Identity = 61/220 (27.73%), Postives = 91/220 (41.36%), Query Frame = 0
Query:   27 VAVASSRLEGSTWDGAVTLLRAMAFASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQDNGDVLLLALKHEGVNATL----LPTTTLADHDDLVSALAASPEGDLLATGGWDCTVKVWALSGSTV-------RPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVRM---------EGCKRECLRLVD 227
            VA+A+S L G  WDG + +LR  A A+   V      +A   T  G  A+ W G+             L+A+  D G+V +         A      LP    ++HD  V+ +A +P G  LA+G  D TV+VWA   +         +P   W      V A AW                +++  ++G V+LWD+R+         EGC   CL  +D
Sbjct:   23 VALATSSLTGEVWDGRLVVLRCAADAARAEV------IASVETEVGNAAVAWAGS------------GLVASGDDAGNVTVWRFGTGAAGAAADEERLPVAVYSEHDQAVTCVACAPGGARLASGSADGTVRVWACGAAAQAERCLQHKPAEPWL--ECGVAAAAW-----------LSAELLSTCDEEGKVRLWDLRVPAAVRAVAREGCGSGCLAPLD 211          
The following BLAST results are available for this feature:
BLAST of NO22G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM21379.11.700e-6038.25methylosome protein [Nannochloropsis gaditana][more]
CBN76668.13.600e-1029.76conserved unknown protein [Ectocarpus siliculosus][more]
ETK82641.12.400e-930.10hypothetical protein L915_12020 [Phytophthora para... [more]
XP_008908610.12.400e-930.10hypothetical protein PPTG_13895 [Phytophthora para... [more]
KUF79055.12.400e-930.10Methylosome protein 50 [Phytophthora nicotianae] >... [more]
XP_005758386.12.900e-727.73hypothetical protein EMIHUDRAFT_107102 [Emiliania ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00340.1NO22G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631596gene_7033Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100424g2gene9041Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00340.1NO22G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00340 ID=NO22G00340|Name=NO22G00340|organism=Nannochloropsis oceanica|type=gene|length=1494bp
AACTACAGGAACACGGCCAACAAGAGTGCGAGCACAAGGAAGCCAACATG
CTCGAATCCGTTGCGCTGCTGGGACACACGTCCTTTGAAGGCCAGgtacg
tgtgatggaagatgggaaggaaggaggaaaggaaggaggggaggaggtta
gatccctcatatcgcgctcctaaaccgtcccatgaacagATAAGCGCCGT
TCAGACACACCATGATTTTGTGGCTGTTGCATCATCTCGTCTCGAAGGCA
GCACGTGGGACGGCGCGGTTACCCTATTACGTGCCATGGCCTTCGCTTCC
TCCCCAGTCGTTACCCTCGAGCTCTCACGCCTCGCAGTGCATGGCACGTC
GTACGGTATTCCAGCCTTGACATGGTGCGGCGCTCCTGCCTTCTCTCCCT
CCTTAGCCACTCAACAACTTCCTCTCCTGGCCGCCGCTCAAGATAATGGT
GACGTTCTTCTCTTGGCCCTCAAGCATGAAGGGGTCAATGCCACCCTCCT
TCCTACCACTACCCTCGCCGACCATGACGACCTCGTCTCAGCCCTAGCAG
CATCACCGGAGGGGGATCTCCTCGCAACGGGCGGGTGGGATTGCACGGTG
AAGGTTTGGGCGTTGAGTGGGAGTACTGTGAGACCTTTAATGAACTGGCA
GGGACATAGCGATCAGGTGACGGCCTTGGCGTGGCGGGGCGGAGCGGGAG
GGAGGGAGGGAGGGAGGGCAGGGGGGTACCAGGTGGCATCGGCAGGGAAG
GATGGATGCGTGAAGCTGTGGGATGTGAGGATGGAAGGATGTAAGCGAGA
GTGCTTGCGGTTGGTCGATGCCCAGGCACAGATGCCATTAGCTCTGGCAT
GGGCCACGTCTACCTGTCCTTCCTCGTCCTCTTCTTTGCTTCCTCCTTCG
GCGTTGGAGGGATCTAATGCTATGCATATCGATGAAACCCCGATTGAAAA
GAAAGTTGAGAATGAGAATGATGTGCTCCTGTCAGTGGCGTTTGACAACG
GAAGTGTCAGTTTGTTGGACCTGCGAATGCTACGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGGAGGATTGTCAGCTCTTCAGCTGTCAAGGC
ACACAAAACGAGGGTAAATGCTTTGGCATTTTCACCTTGTGCTTCTTCTT
CCTCTCCACCTGTACTTGCATCTGGAGGAGACGATGGCCAGGTGGTGCTG
ACGCCACTTGGATTCGAAGAAGATGGAAAAGGACGAAGAGCCACGTTAGC
ATCAAAAGGTGGCAAACAAGAAGGATCGGGCATTCCCATCGCTGCTCACA
TACAGCACACGGATTACGTGCGTGGGCTGGGCTGGTTGGCGACAGCAGGA
GCGGGAGGGCAAGGGGAAGGAACAGTTGCAGCAGCTGCAGCGTCGCCACT
GTCATCGCTGCCACGACCAGGAGTGTTATTGAGTGGAGGGTGGGATGGTC
GGCTCAAAGGGTGGGCGTGGGGACAGGAGGGACAGATGACATGA
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protein sequence of NO22G00340.1

>NO22G00340.1-protein ID=NO22G00340.1-protein|Name=NO22G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MLESVALLGHTSFEGQISAVQTHHDFVAVASSRLEGSTWDGAVTLLRAMA
FASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQ
DNGDVLLLALKHEGVNATLLPTTTLADHDDLVSALAASPEGDLLATGGWD
CTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVAS
AGKDGCVKLWDVRMEGCKRECLRLVDAQAQMPLALAWATSTCPSSSSSLL
PPSALEGSNAMHIDETPIEKKVENENDVLLSVAFDNGSVSLLDLRMLRGG
GGGGGGGGGGRIVSSSAVKAHKTRVNALAFSPCASSSSPPVLASGGDDGQ
VVLTPLGFEEDGKGRRATLASKGGKQEGSGIPIAAHIQHTDYVRGLGWLA
TAGAGGQGEGTVAAAAASPLSSLPRPGVLLSGGWDGRLKGWAWGQEGQMT
*
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Synonyms
Publications