NO22G00340, NO22G00340 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO22G00340 vs. NCBI_GenBank
Match: EWM21379.1 (methylosome protein [Nannochloropsis gaditana]) HSP 1 Score: 243.0 bits (619), Expect = 1.700e-60 Identity = 184/481 (38.25%), Postives = 231/481 (48.02%), Query Frame = 0 Query: 16 QISAVQTHHDFVAVASSRLEGSTWDGAVTLLRAMAFASSPVVT------LELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLP-LLAAAQDNGDVLLLALKHEG------------VNATLLPTTTLADHDDLVSALAASPE--GD-LLATGGWDCTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVRMEGCKRECLRLVDAQAQMPLALAWA--TSTCPS-------SSSSLLPPSALEGSNAMHIDETPIEKKV----------ENENDVLLSVAFDNGSVSLLDLRML---------RXXXXXXXXXXXXXXXXXXXXKAHKTRVNALAFSPCASXXXXXXXXXXXXXGQVVLTPLGFEEDGKGRRATLASKGGKQEGSGIPIAAHIQHTDYVRGLGWLATAGXXXXXXXXXXXXXXSPLSSLPRPGVLLSGGWDGRLKGWAWGQE 447 QI + H D VAVASSRLEG TW+GA+TL A +++ T L L+R+ V T+YGIPAL WCGA + + ++ P LLAA QDNGDV++ + +G TL+P TTL DHDD+VSA+AA E GD LATGGWDC VKVW + V+P+ +WQ H D VT LAWRG GGRE +ASAG+D VKLWD RMEG E LRLVDA Q+PLALAW S+ PS LEG + E P+EK E + L V FD+GSV +LDLR+L + H+TR NALA + C + +L G + G R +G Q+ + P +H DYVR L WL +G S VLLSGGWDG ++ W W E Sbjct: 5 QICDLCVHDDLVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTTLTDHDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVGMDIVQPMSSWQAHRDHVTDLAWRGREGGRE-XXXXXXXLASAGRDRSVKLWDTRMEG---ESLRLVDAHPQIPLALAWGGNASSLPSXXXXXXXXXXXXXXXXGLEG-----VAEGPLEKLTLISNLNLKWGAGEGEWALCVGFDDGSVEVLDLRLLPREAKCRGRGGRRRGVERSNEASILPSQRYRMHQTRTNALAPASCG----------PGASSEFLLASGGDDGVVTGMRVKAGQEGENQKLASPPSCG--RHADYVRALSWLDLSGKGGGHEKVHPPCIPSQ--------VLLSGGWDGHVRAWTWVDE 456
BLAST of NO22G00340 vs. NCBI_GenBank
Match: CBN76668.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 75.9 bits (185), Expect = 3.600e-10 Identity = 61/205 (29.76%), Postives = 95/205 (46.34%), Query Frame = 0 Query: 15 GQISAVQTHHDFVAVASSRLEGSTWDGAVTLLRAMAFASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQDNGDVLLLALKHEGVNATLLPTTTLADHDDLVSALAASPEGD-LLATGGWDCTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVRM-EGC 218 G++ +V D + VA+S L G+TWD + L+ + F++ VV A G + W + + +A DNGDV + + E A L+ L +HDD+VS++AAS D L+ +GG+D +V VW + L + GHS VT + W G+ AS+ D V++WD R +GC Sbjct: 12 GRVESVDISDDMILVATSNLGGNTWDSS---LQVLDFSTKEVV-------ASVKQQSGCADVCW-----------VKPGRRVVSAGDNGDVKVYKMDEE-APARLVEVANLEEHDDIVSSVAASRSRDGLVLSGGYDRSVNVWDIDSDRDTSLDTFTGHSGYVTGVEW-------SAGQDDSQVFASSSTDCSVRVWDRRQPQGC 187
BLAST of NO22G00340 vs. NCBI_GenBank
Match: ETK82641.1 (hypothetical protein L915_12020 [Phytophthora parasitica] >ETL36030.1 hypothetical protein L916_11944 [Phytophthora parasitica] >ETP12348.1 hypothetical protein F441_12286 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 73.2 bits (178), Expect = 2.400e-9 Identity = 59/196 (30.10%), Postives = 89/196 (45.41%), Query Frame = 0 Query: 27 VAVASSRLEGSTWDGAVTLLRAMAFASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQDNGDVLLLALKHEGVNATLLPTTTLAD---------HDDLVSALAASPEGDLLATGGWDCTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVR 214 +AVA S+LEG+ W G V LL A++ RL G+ +L WC +LA D+GDV L L + A + TT +D HDD+V+ ++AS + LAT WD TVK+W + G+ + + + GHSD + +A + + SA +D V++WD R Sbjct: 42 LAVAQSQLEGNVWSGGVALLDAVS----------NERLCELQLETGVSSLAWCSTEG----------DVLALGCDDGDVRLAKLSTDVTFAFVPLTTGSSDDEDAVSGWGHDDVVTGVSASLDKTQLATCSWDLTVKLWDV-GAMDKTVATFDGHSDLIWGVAM---------NPTHAHILCSASQDSTVQVWDAR 207
BLAST of NO22G00340 vs. NCBI_GenBank
Match: XP_008908610.1 (hypothetical protein PPTG_13895 [Phytophthora parasitica INRA-310] >ETN06108.1 hypothetical protein PPTG_13895 [Phytophthora parasitica INRA-310]) HSP 1 Score: 73.2 bits (178), Expect = 2.400e-9 Identity = 59/196 (30.10%), Postives = 89/196 (45.41%), Query Frame = 0 Query: 27 VAVASSRLEGSTWDGAVTLLRAMAFASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQDNGDVLLLALKHEGVNATLLPTTTLAD---------HDDLVSALAASPEGDLLATGGWDCTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVR 214 +AVA S+LEG+ W G V LL A++ RL G+ +L WC +LA D+GDV L L + A + TT +D HDD+V+ ++AS + LAT WD TVK+W + G+ + + + GHSD + +A + + SA +D V++WD R Sbjct: 42 LAVAQSQLEGNVWSGGVALLDAVS----------NERLCELQLETGVSSLAWCSTEG----------DVLALGCDDGDVRLAKLSTDVTFAFVPLTTGSSDDEDAVSGWGHDDVVTGVSASLDKTQLATCSWDLTVKLWDV-GAMDKTVATFDGHSDLIWGVAM---------NPTHAHILCSASQDSTVQVWDAR 207
BLAST of NO22G00340 vs. NCBI_GenBank
Match: KUF79055.1 (Methylosome protein 50 [Phytophthora nicotianae] >KUF94793.1 Calcium/calmodulin-dependent protein kinase type 1B [Phytophthora nicotianae]) HSP 1 Score: 73.2 bits (178), Expect = 2.400e-9 Identity = 59/196 (30.10%), Postives = 89/196 (45.41%), Query Frame = 0 Query: 27 VAVASSRLEGSTWDGAVTLLRAMAFASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQDNGDVLLLALKHEGVNATLLPTTTLAD---------HDDLVSALAASPEGDLLATGGWDCTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVR 214 +AVA S+LEG+ W G V LL A++ RL G+ +L WC +LA D+GDV L L + A + TT +D HDD+V+ ++AS + LAT WD TVK+W + G+ + + + GHSD + +A + + SA +D V++WD R Sbjct: 42 LAVAQSQLEGNVWSGGVALLDAVS----------NERLCELQLETGVSSLAWCSTEG----------DVLALGCDDGDVRLAKLSTDVTFAFVPLTTGSSDDEDAVSGWGHDDVVTGVSASLDKTQLATCSWDLTVKLWDV-GAMDKTVATFDGHSDLIWGVAM---------NPTHAHILCSASQDSTVQVWDAR 207
BLAST of NO22G00340 vs. NCBI_GenBank
Match: XP_005758386.1 (hypothetical protein EMIHUDRAFT_107102 [Emiliania huxleyi CCMP1516] >EOD05957.1 hypothetical protein EMIHUDRAFT_107102 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 66.2 bits (160), Expect = 2.900e-7 Identity = 61/220 (27.73%), Postives = 91/220 (41.36%), Query Frame = 0 Query: 27 VAVASSRLEGSTWDGAVTLLRAMAFASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQDNGDVLLLALKHEGVNATL----LPTTTLADHDDLVSALAASPEGDLLATGGWDCTVKVWALSGSTV-------RPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVASAGKDGCVKLWDVRM---------EGCKRECLRLVD 227 VA+A+S L G WDG + +LR A A+ V +A T G A+ W G+ L+A+ D G+V + A LP ++HD V+ +A +P G LA+G D TV+VWA + +P W V A AW +++ ++G V+LWD+R+ EGC CL +D Sbjct: 23 VALATSSLTGEVWDGRLVVLRCAADAARAEV------IASVETEVGNAAVAWAGS------------GLVASGDDAGNVTVWRFGTGAAGAAADEERLPVAVYSEHDQAVTCVACAPGGARLASGSADGTVRVWACGAAAQAERCLQHKPAEPWL--ECGVAAAAW-----------LSAELLSTCDEEGKVRLWDLRVPAAVRAVAREGCGSGCLAPLD 211 The following BLAST results are available for this feature:
BLAST of NO22G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO22G00340 ID=NO22G00340|Name=NO22G00340|organism=Nannochloropsis oceanica|type=gene|length=1494bpback to top protein sequence of NO22G00340.1 >NO22G00340.1-protein ID=NO22G00340.1-protein|Name=NO22G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bpback to top Synonyms
Publications
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