NO21G02470, NO21G02470 (gene) Nannochloropsis oceanica

Overview
NameNO21G02470
Unique NameNO21G02470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2105
Alignment locationchr21:748490..750594 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:748490..750594 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO21G02470 vs. NCBI_GenBank
Match: EWM29472.1 (hypothetical protein Naga_100714g2 [Nannochloropsis gaditana])

HSP 1 Score: 196.8 bits (499), Expect = 6.100e-47
Identity = 98/126 (77.78%), Postives = 104/126 (82.54%), Query Frame = 0 
Query:   24 MRTACILVGGLGLASAFLAPVPSTPIVRARKTQTKMMLSPEDIITGTQNMVAIVKENDVFVKNAGDYPWGSVQAPDWALPVAAIATLSFGVFIPLILKPGVDAFNTGGAKGAEKIAQGKASPPRPG 150
            MRT C+ +  LG ASAFLAPVPS    R R TQT MMLSPEDI TGT N++AIVKENDVFVKNAGDYPWGSVQAP WALPVAAIATLSFGV IPL+LKPGVDAFNTGGAKGAEKIA    +  RPG
Sbjct:    1 MRTVCLFIASLGFASAFLAPVPSFTPTRIRTTQTSMMLSPEDIATGTSNLLAIVKENDVFVKNAGDYPWGSVQAPGWALPVAAIATLSFGVIIPLVLKPGVDAFNTGGAKGAEKIASSTKASSRPG 126
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BLAST of NO21G02470 vs. NCBI_GenBank
Match: XP_005854230.1 (hypothetical protein NGA_0207200 [Nannochloropsis gaditana CCMP526] >EKU22131.1 hypothetical protein NGA_0207200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 163.3 bits (412), Expect = 7.500e-37
Identity = 80/101 (79.21%), Postives = 85/101 (84.16%), Query Frame = 0 
Query:   24 MRTACILVGGLGLASAFLAPVPSTPIVRARKTQTKMMLSPEDIITGTQNMVAIVKENDVFVKNAGDYPWGSVQAPDWALPVAAIATLSFGVFIPLILKPGV 125
            MRT C+ +  LG ASAFLAPVPS    R R TQT MMLSPEDI TGT N++AIVKENDVFVKNAGDYPWGSVQAP WALPVAAIATLSFGV IPL+LKPGV
Sbjct:    1 MRTVCLFIASLGFASAFLAPVPSFTPTRIRTTQTSMMLSPEDIATGTSNLLAIVKENDVFVKNAGDYPWGSVQAPGWALPVAAIATLSFGVIIPLVLKPGV 101
The following BLAST results are available for this feature:
BLAST of NO21G02470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29472.16.100e-4777.78hypothetical protein Naga_100714g2 [Nannochloropsi... [more]
XP_005854230.17.500e-3779.21hypothetical protein NGA_0207200 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL031nonsL031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR031ncniR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR092ngnoR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007723NSK007723Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02470.1NO21G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100714g2gene1157Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02470.1NO21G02470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02470 ID=NO21G02470|Name=NO21G02470|organism=Nannochloropsis oceanica|type=gene|length=2105bp
CCACTTTCCAAAAAATATACTTTTTCTCGACCCTGCTCGTACAAAGCACA
TACAGCCCACCATTTTGTTTTGGAGAAACGAACGCATCGAAAATGCCTGG
AAAGTAGCACAAGCATCCTGGCCATACAGCGGGGTCCACTCCTTGGAGGT
CATCGTCGTGGTTAATAACTAACTTTATCCAGCCAGCTTGCTTGAGCTTG
CTCCCTCTCCCGTTCTCTTCCCTCCTGGGGATTCCATCTGCTTCCCTCAA
ATAGCTTCGGTCGACGATTACTGTGTTTGGTTTTATTGCCAGGCTTTCTT
TTAGTTTTGTTAAAGCAGCATAGCGCATTTGTCGGACGGCGGGTGGTCGG
CAGCATCATTAACCACGGCACACATGAAGCTGGCTTCAGTTTGGACTTGA
GGTCCTGCGGCCGAGCGAGCCAGACGTGCGTAGGCCCCGCAACAAGCAGA
CAAGAACAAACACAGGCTTTTATTCCCTCATTAGGTCTCTATGCATACAC
CCATAAGCAATAAGGGGGCTTCCCTGCCTACTGACGGTAGTTGTTCCTGG
GTGCCGACACGCGTACACATGCTGCAGTGCTGTCCACCCATCTTGCATAG
GATAATGGACGACGACGACAAACCCCCTGTTCTTCCTTCACCTCAACCCG
TGTATGTCTCACGCACACACACGATAACACACGCATATGCACATAGACAC
GTATGCGCACACGCTCACATACTCATACGCATACCCTACCGCACATAACA
GACTTCATCCCCTTTCAAAATATGCGCACCGCTTGCATCCTGGTGGGCGG
CCTTGGCCTGGCCTCTGCCTTCCTGGCTCCCGTCCCCTCCACCCCCATCG
TCCGCGCCCGCAAGACCCAGACCAAAATGATGCTTTCCCCTGgtacgtat
ttggctataaagcgggagggagggacggagtgacggggagagggagggac
gtgagcatgccaaaccttggcttgggataggctttcatactggctgaagg
ctggccgcaccatcatcacctcgagcatcaccacccgcgttccttacctt
gattccctccccaacttccttatacctcatagAGGATATCATCACCGGGA
CCCAGAACATGGTGGCGATCGTCAAGGAGAACGATGTCTTCGTCAAGAAC
GCCGGGGACTACCCgtgagtgagggagggagggagggagggagggagggc
ggatagtgggtccctatgtaaatttagacacccaaagaggaagcctctag
tagctctataggtatatatatatttatatttacttttgctactttttccc
tccctccctctctagCTGGGGCTCCGTTCAAGCCCCCGACTGGGCCCTCC
CTGTGGCCGCCATCGCCACCCTCTCGTTTGGCGTTTTCATCCCCTTGATC
CTGAAGCCCGGTGTTGACGCCTTTAACACTGgttggtactcttccccctt
ttcttctctatccttgatgtgccccttcccggacagtgggtataagtaga
ctcatctccccccctccctccctccctccctctccttccctcccttcctc
ccttgctcttcagGCGGCGCAAAGGGTGCCGAGAAGATCGCTCAAGGGAA
GGCCTCCCCCCCTCGTCCAGGAGCCAAGTCCGCGGCTGGCAAGGCCGCTC
CTGCCAAGGCAGGGAAAGTGATGGCGAAGGGAGGACCCGTGAAGGCTGCA
GGAGGAAAGAAGGGGTCAGCACCTCCTGCGGCTGCCCCGAAGAAGAAGGG
CTGGTTTTAAAGCGTTTTTGTGAATGTGAGTGCATGGGTGTTTGTTGGTT
GAAAGAGACGGAGGAGAATGAGAGATATTTTTGGGGGGAAGGGGGAAGGA
AGAGAGATGTGTGAGAGAGGCTGAGACTATGCAAGATGATGATACACTCG
CTCGTTCTCTCCTTTCCCTCCCAGAAAAACAGTGTTTGAATTTTGTATTT
AAATTTTTGTTGATGCGAGTGGGGAGAAGATAATGGAGGAAGGGAGGGAG
GAAGGGTTAGGATGACGGGTGGGTGATCCATCGTCTTAATGCTCGTACCG
GATGACAAGAAAAATAAAAATGATATGGAACTGACGATGGAAGTGCGTTC
TTGAC
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protein sequence of NO21G02470.1

>NO21G02470.1-protein ID=NO21G02470.1-protein|Name=NO21G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MRTRSHTHTHTLPHITDFIPFQNMRTACILVGGLGLASAFLAPVPSTPIV
RARKTQTKMMLSPEDIITGTQNMVAIVKENDVFVKNAGDYPWGSVQAPDW
ALPVAAIATLSFGVFIPLILKPGVDAFNTGGAKGAEKIAQGKASPPRPGA
KSAAGKAAPAKAGKVMAKGGPVKAAGGKKGSAPPAAAPKKKGWF*
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Synonyms
Publications