NO21G02370, NO21G02370 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G02370 vs. NCBI_GenBank
Match: EWM20240.1 (hypothetical protein Naga_100380g2 [Nannochloropsis gaditana]) HSP 1 Score: 354.4 bits (908), Expect = 5.300e-94 Identity = 167/335 (49.85%), Postives = 229/335 (68.36%), Query Frame = 0
Query: 115 GLAMAMQLLDKD-LSWDLRDTILKTLPSYIRNLKGHTTVLREIKPNDADWRFSSPGFLTPDRTIIRVVNYYVDLDGSYHVSNDHQVKTKMLVAETDEWISVTESPAFSVIAAQEHLRYPDVYVTGLEDTRFL----VHDKNAPIYTLSSSSEYTRVSGHINQVLGILDPATWTMTIQDVIKSPNPEHHEKNWVFADGLQNIVYGWYPSIQIGAIDLAASELVIHTSIESPKSFSSMRGSTNGVLHENEWWFVTHAVLYRPGQLRYYSHRIVVLDEHLKSITRYSLPFTFEKDPDVEYCLGFKADDAGVTFGYSVRDRTSRTLHVDWSEVQLLFDD 445
GL++ M LL+ L +L + +P Y ++L+GH T+LR K + WRFS+P FL ++R VNY+ DGSYHVS D QVKT++LV +D++I + ES F + +P+ YV GLEDTRF ++ IYTLS+S EY+R + H+NQ+LG+++P TWT+TIQD+I+ P + EKNWVF +G++++VY WYP I+IG ID E VI SI+SP SF +MRGSTNG+LH NEWWFVTH V +R G+ R Y+HRIV+L+ + + RYSLPFTF + D+EYCLG KAD+ G+TFGYSVRD++S TL W E++ FDD
Sbjct: 213 GLSLCMNLLENPLLPSNLASIVYNNIPVYTQSLRGHRTLLRAEKNENDPWRFSTPTFL-DSHVLLREVNYFAAEDGSYHVSQDSQVKTRVLVDGSDQYIKIQESEDFRKRITERGWHHPEAYVQGLEDTRFKSTFDYKANSSVIYTLSASMEYSRSANHMNQLLGVIEPDTWTLTIQDIIRGPFGDRTEKNWVFVNGIESLVYEWYPFIRIGHIDRDKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTHRIVILNFEMSQVLRYSLPFTFNSETDIEYCLGLKADNEGLTFGYSVRDKSSWTLQCSWGEIEQYFDD 546
BLAST of NO21G02370 vs. NCBI_GenBank
Match: EWM20170.1 (hypothetical protein Naga_101281g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 198.4 bits (503), Expect = 4.900e-47 Identity = 87/156 (55.77%), Postives = 114/156 (73.08%), Query Frame = 0
Query: 289 IKSPNPEHHEKNWVFADGLQNIVYGWYPSIQIGAIDLAASELVIHTSIESPKSFSSMRGSTNGVLHENEWWFVTHAVLYRPGQLRYYSHRIVVLDEHLKSITRYSLPFTFEKDPDVEYCLGFKADDAGVTFGYSVRDRTSRTLHVDWSEVQLLFDD 445
I+ P + KNWVF +G++++VY WYP I+IG ID E VI SI+SP SF +MRGSTNG+LH NEWWFVTH V +R G+ R Y++R+V+L+ + I RYSLPFTF + D+EYCLG KAD+ G+TFGYSVRD++S TL W E++ FDD
Sbjct: 1 IRGPFGDRTGKNWVFVNGIESLVYEWYPFIRIGHIDRDKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTNRMVILNFEMSQILRYSLPFTFNSETDIEYCLGLKADNEGLTFGYSVRDKSSWTLQCSWREIEQYFDD 156
BLAST of NO21G02370 vs. NCBI_GenBank
Match: EWM20239.1 (hypothetical protein Naga_100470g1 [Nannochloropsis gaditana]) HSP 1 Score: 109.8 bits (273), Expect = 2.300e-20 Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 0
Query: 115 GLAMAMQLLDKD-LSWDLRDTILKTLPSYIRNLKGHTTVLREIKPNDADWRFSSPGFLTPDRTIIRVVNYYVDLDGSYHVSNDHQVKTKMLVAETDEWISVTESPAFSVIAAQEHLRYPDVYVTGLEDTRF 245
GL++ M LL+ L +L + +P Y ++L+GH T+LR K + WRFS+P FL ++R VNY+ DGSYHVS D QVKT++LV +D++I + ES F + +P+ YV GLEDTRF
Sbjct: 213 GLSLCMNLLENPLLPSNLASIVYNNIPVYTQSLRGHRTLLRAEKNENDPWRFSTPTFL-DSHVLLREVNYFAAEDGSYHVSQDSQVKTRVLVDGSDQYIKIQESEDFRKRITERGWHHPEAYVQGLEDTRF 342
BLAST of NO21G02370 vs. NCBI_GenBank
Match: EWM20222.1 (hypothetical protein Naga_100716g1 [Nannochloropsis gaditana]) HSP 1 Score: 109.4 bits (272), Expect = 3.000e-20 Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 0
Query: 115 GLAMAMQLLDKD-LSWDLRDTILKTLPSYIRNLKGHTTVLREIKPNDADWRFSSPGFLTPDRTIIRVVNYYVDLDGSYHVSNDHQVKTKMLVAETDEWISVTESPAFSVIAAQEHLRYPDVYVTGLEDTRF 245
GL++ + LL+ L +L + +P Y ++L+GH T+LR K + WRFS+P FL ++R VNY+ DGSYH+S D QVKT++LV +D++I + ES F A+ +P+ YV GLEDTRF
Sbjct: 214 GLSLCINLLENPLLPSNLASIVYNNIPVYTQSLRGHRTLLRAEKNENDPWRFSTPTFL-DSHVLLREVNYFAAEDGSYHISQDSQVKTRVLVDGSDQYIKIQESEDFRKRIAERGWHHPEAYVQGLEDTRF 343
BLAST of NO21G02370 vs. NCBI_GenBank
Match: WP_050626516.1 (FkbM family methyltransferase [Bradyrhizobium viridifuturi]) HSP 1 Score: 72.0 bits (175), Expect = 5.300e-9 Identity = 76/276 (27.54%), Postives = 120/276 (43.48%), Query Frame = 0
Query: 179 RVVNYYVDLDG-SYHVSNDHQVKTKMLVAETDEWISVTESPAFSVIAAQEHLRYPDV-YVTGLEDTRFLVHDKNAPIYTLSSSSEYTRVSGHINQVLGIL---DPATWTMTIQDVIKSPNPEHHEKNW---VFADGLQNIVYGWYPSIQIGAIDLAASELVIHTSIESPKSFSSMRGSTNGVLHENEWWFVTHAVLYRPGQ-LRYYSHRIVVLDEHLKSITRYSLPFTFEKDPDVEYCLG--FKADDAGVTFGYSVRDRTSRTLHVDWSEVQLLFD 444
R VNY + DG Y SN+ +KT+ + D+ +SV S S I A L P V G ED R +++ + E T G QVL L + ++ + I++ P+ EKNW V D L N +Y P+ + A E +SP S + RG + V ++ W + H V +RP + R+Y HR V D ++T S PF F + VE+ G + D + +SV D + V+ +++ + +
Sbjct: 395 RAVNYVMTEDGLQYETSNEEPIKTRNFLLHLDDDLSVRSS---SEILAPSDLPAPAFPAVQGFEDMRLFAW--RGALWSSACIRELT-PEGWCEQVLARLQEDERGSYRLVEWRKIQADGPKRDEKNWMPQVAGDDL-NFLYLCDPTRLVNAEGKTLQE------HDSPISAARFRGGSQLVPFDDGWLALIHEVQWRPAERRRFYFHRFVRFDRS-NNMTAVSCPFYFNR-KGVEFAAGLAWHPDQRRLVVSFSVADSEAWIATVEACDIRRVLE 655 The following BLAST results are available for this feature:
BLAST of NO21G02370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G02370 ID=NO21G02370|Name=NO21G02370|organism=Nannochloropsis oceanica|type=gene|length=4064bpback to top protein sequence of NO21G02370.1 >NO21G02370.1-protein ID=NO21G02370.1-protein|Name=NO21G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bpback to top Synonyms
Publications
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