NO21G02250, NO21G02250 (gene) Nannochloropsis oceanica

Overview
NameNO21G02250
Unique NameNO21G02250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1393
Alignment locationchr21:679247..680639 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:679247..680639 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO21G02250 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 326.2 bits (835), Expect = 1.200e-85
Identity = 177/348 (50.86%), Postives = 238/348 (68.39%), Query Frame = 0
Query:    1 MRLIASSRSLLLAAAXAALCLPSALAH--ITVEDNFLDEAAREDILAQLPGQT-RFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDVFEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVYTHTLIPGDLPRRILGPMAFRDGGMQSIGSEATRTVAQASTNSLTVRPGRIIKVNLKFIVLDENPI-RKRAVRKLENEDLVIGCGLMD-QNRRMLGGRNKTTNANDD-----ITFVNSKLKPNFYKPKLTFN--NTLDAVYWTLPSETTKILHPYKITWAFRVGKGVPSGTVVPIGVVIEDDNTPEFLVELRVLVK 337
            M L  SSR  LL+ A A LCL S+ +H  I VEDNF+DE  RE +LAQLP +  RFKHT+DVPG +Y+RL+S+++P N+++  ++ + PAKG+   V AHKD FED++LAD QVGLVYLEGDGRM  +++VTGEET++DV+PGR +SWDN  YTH L+ G +PRRILGPMAFRDGG QSIG +  R + QA  + L  R G+ ++V    +VLD+ PI RKRAVR LE +D+V  C L    N + L   NKT+    D     I+F  SK+ PN ++PK+T+   +  D + WTLPS+ T++L  YKIT   R+GK VPSGTV+P+ + +      E+  EL V+VK
Sbjct:    1 MPLFVSSR-YLLSIATAVLCLTSSFSHAKIVVEDNFIDETTREALLAQLPSEMHRFKHTVDVPGNVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGDDPNRFIIQARAHHLFARAGKTVRVTADLVVLDDQPIGRKRAVRALETDDIVFACSLDPFFNFQSLTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPLYLSVPF----EWEQELGVVVK 343          
BLAST of NO21G02250 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 316.2 bits (809), Expect = 1.200e-82
Identity = 172/348 (49.43%), Postives = 236/348 (67.82%), Query Frame = 0
Query:    1 MRLIASSRSLLLAAAXAALCLPS--ALAHITVEDNFLDEAAREDILAQLPGQT-RFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDVFEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVYTHTLIPGDLPRRILGPMAFRDGGMQSI-GSEATRTVAQASTNSLTVRPGRIIKVNLKFIVLDENPIRKRAVRKLENEDLVIGCGLMD-QNRRMLGGRNKTTNANDD-----ITFVNSKLKPNFYKPKLTFN--NTLDAVYWTLPSETTKILHPYKITWAFRVGKGVPSGTVVPIGVVIEDDNTPEFLVELRVLVK 337
            M L  SSR  LL+ A AALCL S  + A I VEDNF+DE  R+ +LAQLP +  RFKHT+D+PG++Y+RL+S+++P N+++  ++ + PAKG+   V AHKD FED++LAD QVGLVYLEGDGRM  +++VTGEET++DV+PGR +SWDN  YTH L+ G +PRRILGPMAFRDGG QSI G +  R + QA  + L  R G+ ++V    +VLD+ P R+RAVR L   D+V  C L    N + L   NKT+    D     I+F  SK+ PN ++PK+T+   +  D + WTLPS+ T++L  YKIT   R+GK VPSGT++P+ + +      E+  EL V+VK
Sbjct:    1 MPLFVSSR-YLLSIATAALCLTSSFSFAKIVVEDNFIDETTRDALLAQLPSEMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGGGDRNRFIIQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPTADIVFACSLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPS----EWEQELGVVVK 343          
BLAST of NO21G02250 vs. NCBI_GenBank
Match: XP_005852549.1 (hypothetical protein NGA_0710700, partial [Nannochloropsis gaditana CCMP526] >EKU23283.1 hypothetical protein NGA_0710700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.6 bits (161), Expect = 1.700e-7
Identity = 46/149 (30.87%), Postives = 70/149 (46.98%), Query Frame = 0
Query:  185 VAQASTNSLTVRPGRIIKVNLKFIVLDENPIRKRAVRKLENEDLVIGCGLMDQNRRMLGGRNKTTN------------ANDDITFVNSKLKPNFYKPKLTFNNTLDAVYWTLPSETTKILHPYKITWAFRVGKGVPSGTVVPIGVVIED 322
            +AQA   SL   PGR   + L  + L E P+          ED+++ C L+  N  + G   +                ++ ++F   KL+PN ++PKL +  T D + WTLP         YKI W  R+G+GV SGT +P+ V + D
Sbjct:   29 LAQAYLKSLVQAPGRRFTLLLDLLFL-ERPV----------EDVIVSC-LLGGNATVQGHATRLLXXXXXXXLKRARLGDEALSFQRGKLRPNTWRPKLRYVKTNDELAWTLPVGGIVFGKTYKIKWRIRLGRGVASGTELPLTVRVAD 165          
The following BLAST results are available for this feature:
BLAST of NO21G02250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22739.11.200e-8550.86hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
EWM22729.11.200e-8249.43hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
XP_005852549.11.700e-730.87hypothetical protein NGA_0710700, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL027nonsL027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR090ncniR090Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02250.1NO21G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02250.1NO21G02250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02250 ID=NO21G02250|Name=NO21G02250|organism=Nannochloropsis oceanica|type=gene|length=1393bp
ATGCGACTCATTGCCTCCTCCCGGTCCCTCCTGCTGGCCGCCGCTGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGATATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCAAGCAACACCGATCTCTCTCACACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACGCACACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGGGATGCAGTCGATTGGGTCTGAGGCAACTCGTA
CCGTTGCTCAAGCGAGTACCAACTCCTTGACTGTGCGTCCAGGAAGGATC
ATCAAGGTGAACCTTAAGTTTATTGTCCTCGATGAGAACCCCATCCGCAA
GCGCGCGGTGCGGAAGTTGGAGAACGAGGACCTGGTGATCGGGgtaagga
cggagagaggagaggggggagaacggcggaacggaaagagggagggaaga
gcgaggttgcttaccttgctggtagacatgatcaccacagtctactgagt
gactgaaggtcgctgttgctcatactgtgtttcttgccctgcgtatcgtg
tatcttgctattgacctgtctctttgtccctctctcctctctcgtttctc
ccaccctccacatctctccccagTGCGGACTGATGGATCAGAACAGGCGA
ATGCTCGGGGGGCGCAACAAGACAACGAATGCGAACGATGATATCACATT
CGTAAACTCCAAGCTGAAGCCCAATTTCTACAAGCCGAAgtacgtatctt
tgccccgcttcctccctgtctgacggatgtgggaacgagatatggcgagc
gtgtcttttgggagaagaaagccaacttttcagtgccagagctcatcgtc
cctctcttcgtattctccctcgctctcttgctccctgccagGTTGACCTT
CAATAATACACTCGATGCTGTGTATTGGACCCTCCCGAGCGAGACGACGA
AAATCCTGCACCCGTACAAGATCACCTGGGCTTTCCGTGTGGGGAAGGGC
GTGCCGTCCGGTACGGTTGTCCCGATCGGTGTCGTTATTGAGGATGATAA
CACCCCAGAGTTCCTGGTCGAGCTGCGGGTGCTGGTGAAGTAA
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protein sequence of NO21G02250.1

>NO21G02250.1-protein ID=NO21G02250.1-protein|Name=NO21G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MRLIASSRSLLLAAAAAALCLPSALAHITVEDNFLDEAAREDILAQLPGQ
TRFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDV
FEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVY
THTLIPGDLPRRILGPMAFRDGGMQSIGSEATRTVAQASTNSLTVRPGRI
IKVNLKFIVLDENPIRKRAVRKLENEDLVIGCGLMDQNRRMLGGRNKTTN
ANDDITFVNSKLKPNFYKPKLTFNNTLDAVYWTLPSETTKILHPYKITWA
FRVGKGVPSGTVVPIGVVIEDDNTPEFLVELRVLVK*
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Synonyms
Publications