NO21G02240, NO21G02240 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO21G02240 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana]) HSP 1 Score: 326.2 bits (835), Expect = 1.200e-85 Identity = 177/348 (50.86%), Postives = 238/348 (68.39%), Query Frame = 0 Query: 1 MRLIASSRSLLLAAAXAALCLPSALAH--ITVEDNFLDEAAREDILAQLPGQT-RFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDVFEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVYTHTLIPGDLPRRILGPMAFRDGGMQSIGSEATRTVAQASTNSLTVRPGRIIKVNLKFIVLDENPI-RKRAVRKLENEDLVIGCGLMD-QNRRMLGGRNKTTNANDD-----ITFVNSKLKPNFYKPKLTFN--NTLDAVYWTLPSETTKILHPYKITWAFRVGKGVPSGTVVPIGVVIEDDNSPEFLVELRVLVK 337 M L SSR LL+ A A LCL S+ +H I VEDNF+DE RE +LAQLP + RFKHT+DVPG +Y+RL+S+++P N+++ ++ + PAKG+ V AHKD FED++LAD QVGLVYLEGDGRM +++VTGEET++DV+PGR +SWDN YTH L+ G +PRRILGPMAFRDGG QSIG + R + QA + L R G+ ++V +VLD+ PI RKRAVR LE +D+V C L N + L NKT+ D I+F SK+ PN ++PK+T+ + D + WTLPS+ T++L YKIT R+GK VPSGTV+P+ + + E+ EL V+VK Sbjct: 1 MPLFVSSR-YLLSIATAVLCLTSSFSHAKIVVEDNFIDETTREALLAQLPSEMHRFKHTVDVPGNVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGDDPNRFIIQARAHHLFARAGKTVRVTADLVVLDDQPIGRKRAVRALETDDIVFACSLDPFFNFQSLTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPLYLSVPF----EWEQELGVVVK 343
BLAST of NO21G02240 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana]) HSP 1 Score: 316.2 bits (809), Expect = 1.200e-82 Identity = 172/348 (49.43%), Postives = 236/348 (67.82%), Query Frame = 0 Query: 1 MRLIASSRSLLLAAAXAALCLPS--ALAHITVEDNFLDEAAREDILAQLPGQT-RFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDVFEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVYTHTLIPGDLPRRILGPMAFRDGGMQSI-GSEATRTVAQASTNSLTVRPGRIIKVNLKFIVLDENPIRKRAVRKLENEDLVIGCGLMD-QNRRMLGGRNKTTNANDD-----ITFVNSKLKPNFYKPKLTFN--NTLDAVYWTLPSETTKILHPYKITWAFRVGKGVPSGTVVPIGVVIEDDNSPEFLVELRVLVK 337 M L SSR LL+ A AALCL S + A I VEDNF+DE R+ +LAQLP + RFKHT+D+PG++Y+RL+S+++P N+++ ++ + PAKG+ V AHKD FED++LAD QVGLVYLEGDGRM +++VTGEET++DV+PGR +SWDN YTH L+ G +PRRILGPMAFRDGG QSI G + R + QA + L R G+ ++V +VLD+ P R+RAVR L D+V C L N + L NKT+ D I+F SK+ PN ++PK+T+ + D + WTLPS+ T++L YKIT R+GK VPSGT++P+ + + E+ EL V+VK Sbjct: 1 MPLFVSSR-YLLSIATAALCLTSSFSFAKIVVEDNFIDETTRDALLAQLPSEMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGGGDRNRFIIQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPTADIVFACSLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPS----EWEQELGVVVK 343
BLAST of NO21G02240 vs. NCBI_GenBank
Match: XP_005852549.1 (hypothetical protein NGA_0710700, partial [Nannochloropsis gaditana CCMP526] >EKU23283.1 hypothetical protein NGA_0710700, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 66.6 bits (161), Expect = 1.700e-7 Identity = 46/149 (30.87%), Postives = 70/149 (46.98%), Query Frame = 0 Query: 185 VAQASTNSLTVRPGRIIKVNLKFIVLDENPIRKRAVRKLENEDLVIGCGLMDQNRRMLGGRNKTTN------------ANDDITFVNSKLKPNFYKPKLTFNNTLDAVYWTLPSETTKILHPYKITWAFRVGKGVPSGTVVPIGVVIED 322 +AQA SL PGR + L + L E P+ ED+++ C L+ N + G + ++ ++F KL+PN ++PKL + T D + WTLP YKI W R+G+GV SGT +P+ V + D Sbjct: 29 LAQAYLKSLVQAPGRRFTLLLDLLFL-ERPV----------EDVIVSC-LLGGNATVQGHATRLLXXXXXXXLKRARLGDEALSFQRGKLRPNTWRPKLRYVKTNDELAWTLPVGGIVFGKTYKIKWRIRLGRGVASGTELPLTVRVAD 165 The following BLAST results are available for this feature:
BLAST of NO21G02240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G02240 ID=NO21G02240|Name=NO21G02240|organism=Nannochloropsis oceanica|type=gene|length=1393bpback to top protein sequence of NO21G02240.1 >NO21G02240.1-protein ID=NO21G02240.1-protein|Name=NO21G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bpback to top Synonyms
Publications
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