NO21G02080, NO21G02080 (gene) Nannochloropsis oceanica

Overview
NameNO21G02080
Unique NameNO21G02080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3371
Alignment locationchr21:614778..618148 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:614778..618148 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
GO:0016579protein deubiquitination
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain_like_cys_pep_sf
IPR028889USP_dom
IPR001394Peptidase_C19_UCH
Homology
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BLAST of NO21G02080 vs. NCBI_GenBank
Match: EWM22713.1 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 463.0 bits (1190), Expect = 1.700e-126
Identity = 329/605 (54.38%), Postives = 367/605 (60.66%), Query Frame = 0 
Query:   15 PSLLSFAALHPHHHRSATTASMPPDIAEKISRSEARAERSKRRGSLGVELPERDLRRQIGCRLMNLGNSCYQNCILQILVNLPDVRERLVAFAGRHQDCEEEYCFPRDLCHHAVEVPVAAAKGQALSATWVLKYQQAGEGVMGDLYRQSDPACFLHAAADWCVDRATSPSHALPLFSDLWEGQAFEHEWVCPTAFPACPARPKDLHAQPFLMLNIPVPSSPSSLETCLKESVFEDKVVGGRECEEVGCPYGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSHPHTNDRNETLPVLPPSFLPLPLARHEKHQHLRLATLPRYLCLRLLRFNNSLKKIRTAVTFEDTLNLSSFYSGSGREEEGG---REGGQEG---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGVEGXXXXXXXXXXXXXXXXXXXXXXWWLFDDAKRHEEVDASRVLRATDEVYMLVYRQKERGRE 608
            PS LS A +    + SAT AS+PP+IA +I+RSEARAERSKRRGS GVELPE D+RRQIGCRLMNLGNSCYQNCILQILVNLPDVR+RLV FA  H  CEE+YCFPRDL  HAV+VPVAAAKGQALSA+WVLKYQQAGEGV+GDLYRQSDPACFLH AADWCVDRA  P+HALPLF DL+EG AFEHEWV P +FP CP +PK+LH+QPFLMLNIPVP+SPSS+  CL+ SVFEDKVV GRECEE GCPYGR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                      P L P   P P ARH+KHQ LRLA LPRY+CLRLLRF+NSLKKIRT V +E+T++   F S   RE+E G   REGG E                                                              +G                          WWLFDDAKR++EV+A RVLRA+DEVYMLVYR+++R  +
Sbjct:   77 PSPLSLARIDQEQYHSATIASVPPEIAARIARSEARAERSKRRGSRGVELPENDVRRQIGCRLMNLGNSCYQNCILQILVNLPDVRQRLVEFAAGHTACEEDYCFPRDLSRHAVDVPVAAAKGQALSASWVLKYQQAGEGVIGDLYRQSDPACFLHGAADWCVDRAAGPAHALPLFHDLFEGAAFEHEWVDPASFPRCPVQPKNLHSQPFLMLNIPVPASPSSVMACLRASVFEDKVVTGRECEEEGCPYGRPAARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-------------------------------------------------------------------------------------PPLSPRCSPSPPARHDKHQQLRLAHLPRYVCLRLLRFDNSLKKIRTPVAYEETIDFGHFVS---REQEAGTTKREGGAEAHGGAGVGGKRKRRESVKGEGERVVLSLNAEGGEAAGGQGLKGEEQGVRGPSEYELMSVVLHQGRTRQRGHYYLYQRVLEGVEGGGESGKWWLFDDAKRYQEVEACRVLRASDEVYMLVYRRRDRAEK 593
The following BLAST results are available for this feature:
BLAST of NO21G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22713.11.700e-12654.38Peptidase C19, ubiquitin carboxyl-terminal hydrola... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02080.1NO21G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602738gene_8177Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100639g2gene7730Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02080.1NO21G02080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02080 ID=NO21G02080|Name=NO21G02080|organism=Nannochloropsis oceanica|type=gene|length=3371bp
CCAGTCTTCTGCTGCTGATGAGACATGCCCTGCCACTTGCTGGTTTCCGG
GCTTGGTGTCGTGGGTGGCCGTGTGCACCAGTGCAATGAAGGAAAGCCAT
GTCACGGGCACACACATGCAGCTTCCCTTGATTGTTTGCAACAGCTTGTA
CCAATACTCTGCTCGCCTTTTGCCTTTTTGGTTACTTTCACTCTCTCGAC
CAGCCCCTCTCTCTTCAAGTGGGGGATACTGTCCATATCCGCGCAATTGT
TGACTTTCCCTTACACTCCCCTCCTTCCCCTCCCGCGTCCACTGACGCAC
CATAGACACACACTCCCAATACTGGGTGGGTGACATTATATCAGTGGATA
AAGGTGCCTTCCAGGTCTCTCCTTCCTGGCAAGAGCCGCAATATTGCCAC
CTCCTTTCCTCCCTTCTCCCCCAGCCTCTCCTACTCCTAGCCATGCCGCC
GCTGCCTCCGGTCTCCCCCCCCACCTCCCCTTCCCCCTCGCTCCTCTCCT
TTGCTGCCCTCCATCCCCATCATCACCGCTCGGCGACAACTGCATCCATG
CCTCCTGACATTGCCGAGAAAATTTCTCGCTCGGAAGCACGGGCGGAACG
CAGCAAGCGCCGGGGGTCCCTGGGTGTGGAGCTCCCAGAGCGTGACTTGA
GACGGCAGATTGGCTGCCGGTTAATGAATCTGGGAAATAGCTGCTATCAG
AATTGTATTCTGCAGATACTGGTCAACTTGCCTGATGTCAGAGAGAGGCT
AGTGGCGTTCGCGGGGAGGCATCAGgtacggagggagggagggagggagg
agaggagataaagggagggaatggttcttgaaaatgtcattgccatgcga
tctctacgataccatcaaaccaatttggtatgctttgtctctttctcccc
cttcctccttcccgtgtttcccagGACTGCGAGGAGGAATACTGCTTCCC
CAGGGATCTATGTCATCACGCCGTGGAGGTGCCTGTCGCGGCCGCTAAGG
GCCAAGCCCTTTCTGCCACGTGGGTACTCAAGTACCAGCAAGCAGGGGAA
GGCGTGATGGGCGACTTGTACAGGCAATCGGACCCTGCCTGTTTTCTCCA
CGCGGCTGCCGATTGgtggggtgcaagggagggagggagggagagaggga
gggagggggttcacgtcccaacgacagtaggtttccaatactccctctcg
ccattcctccttccctccttccctccctagGTGCGTCGACCGTGCCACAT
CGCCATCCCATGCCCTCCCCCTCTTTTCGGACCTGTGGGAGGGGCAAGCT
TTCGAGCATGAGTGGGTGTGTCCGACCGCCTTCCCTGCCTGTCCCGCCCG
TCCTAAGGACTTGCACGCACAGCCGTTTTTGATGCTAAACATACCCGTGC
CTTCCTCCCCTTCCTCTCTCGAGACCTGCCTGAAGGAGAGTGTGTTTGAG
GATAAGGTGGTGGGAGGGAGGGAATGCGAGGAGGTGGGATGTCCGTATGG
ACGGTCTCCTCCTCCTGCTGCTGCTACTGCTGCTGCTGCTGCGGGAGACG
AGGGCAGGAAGGAGGGTGAGAAGGAAGAGGGTTGTGATGAGAGTGGCGGA
GGAGGAGCAGCGAAAGAAGGTGCAGCAGGAGAAGGAATCACAGAAGGGGA
GCCAAAAGAAGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAA
GAGGAGGAAGAGGAGAAGGGAGGGAGGGTAGACGGACGCCCACGCACGCG
CAGCCTCCAAGCAGCAGTGGCAGCAGCAGCAGCAACGCTGGAGGTCGTTT
CACCCCCACCCGATGCAGCCGCTCCCCCCCGCTCCCGCCCTCCCCTCCTC
CGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTGCT
ATCTTGTCCCACCCCCACACCAACGACAGGAATGAAACCCTCCCCGTCCT
CCCTCCCTCCTTTCTTCCCTTGCCTCTGGCCCGGCACGAGAAACATCAGC
ATTTGCGTTTGGCGACGTTGCCTCGGTATCTATGTCTGCGACTCTTGAGA
TTCAACAACAGCTTGAAGAAGATCCGGACGGCCGTTACATTTGAAGACAC
GTTAAATTTGTCTTCGTTTTACAGTGGGAGTGGGAGGGAGGAGGAGGGAG
GAAGGGAGGGAGGACAAGAAGGGAAGGGTGGAGGAGGAAGTGGTTCTAGG
AAGAGGACAAGGAGCATGACATCAGTCGAGGGGGAGGCGATGGCAAGAGC
TGCCGCCACTGCTGCCACTGTGGGAGGAGGAGGAGGAGGAGGAGGAGGGA
gtgagggagggaaggagggaggctctgggccgtcttcggagtatgaatta
atgtctgtggttatacatcaggggcgaacaaggcaacgcgggcactactt
tttgtaccagCGCGTACTGGAAGGGGTGGAGGAGGGAGGGAAGGAGGAGT
TGAAGGGAAGACAGAAGGACGATATGGCGGGGATGGAAGAAGGAGGGAGG
GAGGGAGTGGGGGGGAAGGGAAGTGGTGGTTGTTTGATGACGCGAAGAGG
CATGAGGAGGTGGATGCCTCACGCGTGTTGCGAGCCACGGACGAGGTTTA
CATGCTGGTGTACCGACAGAAGGAGAGAGGGAGGGAGCGAGGGGTGCGGC
AGCAGCATCAAGAACGACAGCAGCAGCAGCACCACCAGCATGGCACGTCT
GCTCTAATTGCTGCTAGTGCTGCTGCGGCTACTACTGTGGCTGCTGCTGC
GGCTACTACTGTTGCTGCCCCTTCATTCCCGTCATCGTCGTCGTCCTCCT
CCACCTCCTCTACCTCCTCTTCCTCCTCCACTGGCACGTCACCCTCGGTG
GCGACCACAGACAGCGTGGCCTCACGAGCAACAACAAGAGCAGCAGCATC
GCAGCGAGAGGAGCTGGGACATGAGGAAGACGGAGAAGGGGGGAGGGTGA
GGGAGGGTTTGCCTCTTCCCCTCCCACCTCTTATGGACGGAGTGCTCGCA
AACGCGGACGACCTCGTGGCCTGACGGCAATCACTGATCGGCAGGCGTTG
GAGTGGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGGGAGGGATA
GGAGAGGGTGAAGCCTCGGATGGTGTCGATGCCGGGAAGGAAACGACCTG
GCGCTAGATGATGAGTTATTACATTGATTGGGATGGGAAGAGAAAATGAA
AGGTTTAGATGAAGGACTGAGAGAGGAAAATAGGTAAGGATGTAAAAAAT
GTTCACAGGAGGTGCAAAGAGAGAAGGGTTGAGAGGCATGGCAGTGGACC
AAATGAAAGGGACACACTGGCGCAAAAGCACAGCAAAAAGCAGCAGCAAA
AGAATGGAATAGGGGAAAGCA
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protein sequence of NO21G02080.1

>NO21G02080.1-protein ID=NO21G02080.1-protein|Name=NO21G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=736bp
MPPLPPVSPPTSPSPSLLSFAALHPHHHRSATTASMPPDIAEKISRSEAR
AERSKRRGSLGVELPERDLRRQIGCRLMNLGNSCYQNCILQILVNLPDVR
ERLVAFAGRHQDCEEEYCFPRDLCHHAVEVPVAAAKGQALSATWVLKYQQ
AGEGVMGDLYRQSDPACFLHAAADWCVDRATSPSHALPLFSDLWEGQAFE
HEWVCPTAFPACPARPKDLHAQPFLMLNIPVPSSPSSLETCLKESVFEDK
VVGGRECEEVGCPYGRSPPPAAATAAAAAGDEGRKEGEKEEGCDESGGGG
AAKEGAAGEGITEGEPKEDGGGGGGGGGGGGRGGRGEGREGRRTPTHAQP
PSSSGSSSSNAGGRFTPTRCSRSPPLPPSPPPPPPPPPPPPPPPPPPAIL
SHPHTNDRNETLPVLPPSFLPLPLARHEKHQHLRLATLPRYLCLRLLRFN
NSLKKIRTAVTFEDTLNLSSFYSGSGREEEGGREGGQEGKGGGGSGSRKR
TRSMTSVEGEAMARAAATAATVGGGGGGGGGTRTGRGGGGREGGVEGKTE
GRYGGDGRRREGGSGGEGKWWLFDDAKRHEEVDASRVLRATDEVYMLVYR
QKERGRERGVRQQHQERQQQQHHQHGTSALIAASAAAATTVAAAAATTVA
APSFPSSSSSSSTSSTSSSSSTGTSPSVATTDSVASRATTRAAASQREEL
GHEEDGEGGRVREGLPLPLPPLMDGVLANADDLVA*
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Synonyms
Publications