NO21G02020, NO21G02020 (gene) Nannochloropsis oceanica

Overview
NameNO21G02020
Unique NameNO21G02020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1994
Alignment locationchr21:592178..594171 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:592178..594171 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019180Oxidoreductase-like_N
Homology
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BLAST of NO21G02020 vs. NCBI_GenBank
Match: XP_005855847.1 (hypothetical protein NGA_0569800, partial [Nannochloropsis gaditana CCMP526] >EKU20520.1 hypothetical protein NGA_0569800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-11
Identity = 43/75 (57.33%), Postives = 46/75 (61.33%), Query Frame = 0 
Query:  165 PLSASREELLAGGEPEPPGESECCGNGCDDCVWIEYWERLEDYKRAKAQVEDIVAATAAAITKVLIDKEGRGEGE 240
            P  AS EE     EPEPPGESECCGNGCDDCVWIEYWERLED+K    Q E   AA           +EGR E +
Sbjct:  136 PGGASVEE-----EPEPPGESECCGNGCDDCVWIEYWERLEDFK--ARQKERAQAAQQGVEEHDSRHREGRDESQ 203
The following BLAST results are available for this feature:
BLAST of NO21G02020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855847.11.500e-1157.33hypothetical protein NGA_0569800, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02020.1NO21G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO21G02020.2NO21G02020.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602709gene_8169Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02020.1NO21G02020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO21G02020.2NO21G02020.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02020 ID=NO21G02020|Name=NO21G02020|organism=Nannochloropsis oceanica|type=gene|length=1994bp
TCACAAACTTATTTCCTCTTGTTGCCGTCCGTCGTCTTCGTCCTATCTTG
ATGTGTGGGATAGATGTGATAAGATATGAGCGGCAGGTTATGGCCAGGCG
TGTTATACTTAAGGGTCAGAGATGCTAGCCATGCATCAATGATAATGATA
GGCATGTCGCATTGACGCACGAGATTTCATCTTTTCATTCTCGGTGGCGA
AGTCGCTGCCTCTGACGACAGATAGGCCCAAAGACTCGCCAGAAGCCAGC
GTCTGTTTCCTTTTTGATTTGTGCTTTTAGGGGCTGCATGGCTTTCTCAT
TGTGACACAGTCAGTgtaagtagtctgtgtttattcgtagttgagggccc
agtggcatgtgcttccaagctagattggggtgtccaaaagcactgtcgag
acttcccctaaattccccgctttccctcgctccctccttcccagGACACA
AACAGCCACGATCCCTGCCCCTTGGCTCTGCACATCACAAGACGGGCTCA
CACCATACAAGGCTGGCGGCCGTAAAAGGAGGACTGCGGTGGCTTTTTGG
GGTCTTCCCGCGGCCAGCCACCACCAACATTTCCACCGCGGCGACCCAAA
GCAATGTGGTCAGCAATGGCAACAGGAGAAAAAGGCCACGACAAGGGCCG
CTGCCGCCACTGCTATTGCCATTGCGGACGAATGCAAGAGGACACAATGT
CAGCAAAGTGCAGTTGCTGCAAGGGATCAGACCAAAACTAATGTCTGCCT
GCGGGCGGCTTGCGTTGGCGCACTTTTCGTCCTCGTCCTCATTCTCGTCC
TCATCTTCCTGTGCTTCTTCCGAAATCACACACCCGTCATTACAATCACC
GCTGTCCGCGTCAAGAGAGGAATTGCTGGCGGGCGGCGAGCCGGAACCGC
CAGGCGAGTCGGAATGCTGTGGGAATGgtaagcttttgccaggatttgaa
gagggatgcaggagaaaaggatcagcgaagtagacactatcatatggtgt
ccttccacttttggattatttttttgccaaaagagtgcgagagtgcgaga
gaatctggagaacatcaaacagacagactcaatgcacaatcattccttcg
ctgtttctttccctccctccttccgtctcccccccttctgcagGCTGCGA
CGACTGCGTGTGGATTGAATACTGGGAAAGACTAGAGGATTACAAACGAG
CAAAGGCTCAGGTGGAGGATATAGTAGCAGCAACAGCAGCAGCAATAACA
AAAGTTTTAATCGATAAGGAGGGACGCGGAGAGGGAGAGACGATGGGGGC
GTGTGAACCAGAAGCTGTAGCAGCAGCAGCAGCAGTAGCTGCGAAGTCCT
CGATACCAGCACGAGTAAAAGGGAGGAAAGATGATGACTGAGTGCCCCAT
TTATTGCGTCAAATTGTTAATGCTAGGGTCACATGTATAATAAAGAATCC
ATACATACGAACAACGAATGATCTCATAGAAGCGTAAGCGCTACAGCAGA
GATAATCCATACACCACAAAGAGGGAATAGAACGGGAACATATATCCACT
AGCCACACAAACATTATGCCATATGTTCTTAATTGCGTTCAATCTCATCA
GTGAGTGTCTCATACCGATGAAGACAATAAATCCAGGAGGAACAAAGACG
CGAGACCCCCAGTGTGCGGCCAGAAGCCAGGCCGCTGACGACTGCAGGCC
GCACACTATGGAGGAAGATGAGTATTTTACGATGGGAGCTCGGCGAATGT
GAGCGTGCGCACTCTGCACACTGTCAAACAGATACAAGGAAGGATGAAAA
ACGACGGCAGCGCAATGCAAGGGCGGCGTGGATGTGTGAAAAGGCGTTTT
CAGGGAGCAAAAGTGCCGAGACCAGGATGGTGGGCAAAACGCGGACAGCA
CCTAGAGGCTCAAGGCACATGACACAATGAGAATCAGCCATGAGACAAAC
GAATCGCGAAAGATTTCAAAGTATTTCGGCATTCCTTGATGATA
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protein sequence of NO21G02020.1

>NO21G02020.1-protein ID=NO21G02020.1-protein|Name=NO21G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MSACGRLALAHFSSSSSFSSSSSCASSEITHPSLQSPLSASREELLAGGE
PEPPGESECCGNGCDDCVWIEYWERLEDYKRAKAQVEDIVAATAAAITKV
LIDKEGRGEGETMGACEPEAVAAAAAVAAKSSIPARVKGRKDDD*
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protein sequence of NO21G02020.2

>NO21G02020.2-protein ID=NO21G02020.2-protein|Name=NO21G02020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MCFQARLGCPKALSRLPLNSPLSLAPSFPGHKQPRSLPLGSAHHKTGSHH
TRLAAVKGGLRWLFGVFPRPATTNISTAATQSNVVSNGNRRKRPRQGPLP
PLLLPLRTNARGHNVSKVQLLQGIRPKLMSACGRLALAHFSSSSSFSSSS
SCASSEITHPSLQSPLSASREELLAGGEPEPPGESECCGNGCDDCVWIEY
WERLEDYKRAKAQVEDIVAATAAAITKVLIDKEGRGEGETMGACEPEAVA
AAAAVAAKSSIPARVKGRKDDD*
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Synonyms
Publications