NO21G01930, NO21G01930 (gene) Nannochloropsis oceanica

Overview
NameNO21G01930
Unique NameNO21G01930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1016
Alignment locationchr21:571070..572085 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:571070..572085 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO21G01930 vs. NCBI_GenBank
Match: EWM22694.1 (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana])

HSP 1 Score: 307.8 bits (787), Expect = 2.900e-80
Identity = 146/167 (87.43%), Postives = 153/167 (91.62%), Query Frame = 0 
Query:    1 MGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQIDQQGGFTSLRMGGKERREVRGAPFSAASRDPLRRRFTSMEDFFSRSHMPEFESQLCVRVMVTEERTGRMALLWSTRKDAAYLTEAPLTYWEPFLPEGSISCFLDHWSPLMCPSYDGESMTVTIGFHICPEEA 168
            MGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQ+DQQGGFTSLRMGG  RREV G  FSAASRDPLRRRF SMED+F R H+PEF + L VRV VT+ERTGRMALLWSTRKDAAYLTEAPL YWEPFLPEGSISCFLDHWSPLMCP+YDGESMTVTIGFH+CPE A
Sbjct:  278 MGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEAPLAYWEPFLPEGSISCFLDHWSPLMCPAYDGESMTVTIGFHVCPEAA 444
[Close]
BLAST of NO21G01930 vs. NCBI_GenBank
Match: EWM22815.1 (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana])

HSP 1 Score: 109.8 bits (273), Expect = 1.200e-20
Identity = 69/242 (28.51%), Postives = 119/242 (49.17%), Query Frame = 0 
Query:    2 GEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQIDQQGGFTSLRMGGKERREVRGAPFSAASRDPLRRRFTSMEDFFSRSHMPEFESQLCVRVMVTEERTGRMALLWSTR-KDAAYLTEAPLTYWEPFLPEGSISCFLDHWSPLMCPSYDGESMTVTIGFHICPEE-------------AEGXXXXXXXXXXXXXXXXXXKEKLYRLAGGDVERYEDHQSYISVTFMTLNTNGIHQFFRSLL 230
            GE       LSFE++D  D +R+  ASGP+ V    + G T+LR+ G +R EV   PFSA SRDP+ +RF ++  +   S  P+F   L VRV+ T+ RTG  AL++++  K    + ++ L +W  FLP  S+  + + WS  +  +   E++ ++  F++ P +              E                    ++ + + GGD   Y +H S+++V F TL+ +   ++ +  L
Sbjct:  336 GEEWHAHVLLSFEIYDVQDSMRLFVASGPLEVIQSTESGLTALRLTGTKRSEV-CRPFSAKSRDPVNKRFENISAYLCHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVW-EAWSRWVLQNGTQEAVEISTSFYVSPVQKSPVSSASSTGSAEEREDGWMHFPSATGTSRQRALDQPHVIMGGDETAYANHNSFVAVQFRTLDASVPARYIKGAL 575
[Close]
BLAST of NO21G01930 vs. NCBI_GenBank
Match: XP_005853741.1 (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EKU22622.1 hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EWM30397.1 hypothetical protein Naga_100026g9 [Nannochloropsis gaditana])

HSP 1 Score: 86.7 bits (213), Expect = 1.100e-13
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 0 
Query:    7 DGFSLSFEVWDAMDGLRMLSASGPIRVQIDQQGGFTSLRMGGKERREVRGAPFSAASRDPLRRRFTSMEDFFSRSHMPEFESQLCVRVMVTEERTGRMALLWSTRKDAAYLTEAPLTYWEPFLPEGSISCFLDHWSPLMCPSYDGESMTVTIGFHICPEEAE 169
            +G +LSF++ D  DG R+ S++GPIR       G T++++ G+ RR    APFSAASRD      +S+E+ F      ++     +RV   +ERTG+MALL+S+ K      E PL   +  +P+G++      WS +  PS D     +T+ F++ P E +
Sbjct:  365 EGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVT--APFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVE-PLGE-DMGVPQGTL-LVNQGWSRVTIPSTDLAMQMLTV-FYVAPVEGQ 520
The following BLAST results are available for this feature:
BLAST of NO21G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22694.12.900e-8087.43hypothetical protein Naga_100340g3 [Nannochloropsi... [more]
EWM22815.11.200e-2028.51hypothetical protein Naga_100437g2 [Nannochloropsi... [more]
XP_005853741.11.100e-1334.57hypothetical protein NGA_0168202 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004587NSK004587Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01930.1NO21G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602677gene_8159Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01930.1NO21G01930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01930 ID=NO21G01930|Name=NO21G01930|organism=Nannochloropsis oceanica|type=gene|length=1016bp
ATGGGGGAGGCTCTGGAGGATGGCTTCAGTTTGTCGTTCGAGGTGTGGGA
CGCCATGgtacgtggaattcacatcccgtatgatgatacatagaccctgc
cgtatcctctttccttacctcccactcttcctcctttttccaacagtgaa
aacatgttctcacgcccgcctcgtcctctttctttccttccctccctccc
tccttgcccccctccctcagGACGGCCTCCGGATGCTCTCGGCCTCGGGG
CCTATCCGGGTCCAGATCGATCAACAGGGAGGCTTCACGTCCCTCCGGAT
GGGGGGTAAGGAAAGGAGGGAAGTTCGCGGTGCTCCGTTTTCAGCGGCTT
CTCGCGATCCGCTCAGGCGGCGATTCACGTCGATGGAGGATTTTTTCTCT
CGGAGCCATATGCCGGAGTTTGAGTCTCAGTTGTGTGTACGTGTGATGGT
GACCGAAGAGCGCACGGGGAGGATGGCCTTGCTGTGGTCGACCAGGAAGG
ATGCGGCGTATCTCACGGAGGCACCCTTAACGTACTGGGAGCCGTTTCTC
CCGGAGgtatggatgtccctcgatctttcttcctctctccctcaatctct
ttctctccgtctcgatcatgaccacgaaaaattttgattcacctgagaaa
ctccttcctccttcccctcttccttcactctgtccatccctcccttcaat
cttttcgaagGGCTCCATCTCCTGTTTTCTCGACCACTGGTCTCCCTTGA
TGTGCCCCTCTTACGACGGGGAGAGCATGACCGTCACCATCGGCTTCCAC
ATCTGCCCCGAAGAGGCCGAGGGGGAAGAGGGGAGGGAGGGAGGGCAGCA
AGCCGAGCAAGAGGAGGGCGAGGCGGAGAAGGAGAAGCTGTACCGCCTTG
CGGGGGGAGATGTCGAGAGGTACGAGGACCATCAGAGTTACATCTCGGTC
ACATTCATGACGCTGAATACGAATGGCATCCATCAGTTCTTCAGGAGCTT
GTTGAGGGAGGGGTAG
back to top

protein sequence of NO21G01930.1

>NO21G01930.1-protein ID=NO21G01930.1-protein|Name=NO21G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQIDQQGGFTSLRMGGKE
RREVRGAPFSAASRDPLRRRFTSMEDFFSRSHMPEFESQLCVRVMVTEER
TGRMALLWSTRKDAAYLTEAPLTYWEPFLPEGSISCFLDHWSPLMCPSYD
GESMTVTIGFHICPEEAEGEEGREGGQQAEQEEGEAEKEKLYRLAGGDVE
RYEDHQSYISVTFMTLNTNGIHQFFRSLLREG*
back to top
Synonyms
Publications