NO21G01730, NO21G01730 (gene) Nannochloropsis oceanica

Overview
NameNO21G01730
Unique NameNO21G01730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1603
Alignment locationchr21:518527..520129 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:518527..520129 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO21G01730 vs. NCBI_GenBank
Match: EWM22659.1 (hypothetical protein Naga_100023g6 [Nannochloropsis gaditana])

HSP 1 Score: 357.8 bits (917), Expect = 3.700e-95
Identity = 207/315 (65.71%), Postives = 236/315 (74.92%), Query Frame = 0
Query:   34 LLASSVVPEASAFLPLHSCSCLPS--PSSCRSSVASHARTPVSTPQSFGKRALVXXXXXXXXXXXXXXXXKGLRGDVLRDSGSSTSRQANDTTGSAGAGSACDPNNPFFTSEFGEDXXXXXXXXXXXXXXXXXXXXXXXXEWLLNFSRDDPDLYTETFSKPEERKARAAATKNRYDFTCLTVEEVARSYQVPISWVGDALCNFGVVPPIQWTARMGDLIDGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEEGFALPFGLRSHLRLEQYARLMRRLGLARELTDQIKENHPDPDYPST 347
            L+++S+  EASAFL L S   L S   +SC+ S    A       ++FG+     XXXXXXXXXXXXXXX                R+ NDTT  A +G+A DP+NPFFTSEFGE                         EWLLNFSRDDPD +TETFS P+ER++RA ATK+RYDFTCLTVEEVARSYQVPISWVGDALCNFGVVPPIQWTAR+GD+IDG+QA+ALLEAMHGWDHAIM+DMYTWDSLRELAASH++PIAKVLQVCDEEGFALPFGLRSHLR+EQYARLMRRLG+A+ELTD I+E HPDPDYPST
Sbjct:   16 LISTSISSEASAFLYLSSSCPLSSRPQTSCQRSKTRFA----DKSRNFGRSV---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLNDTTAPA-SGAAFDPHNPFFTSEFGEQELEDNSSTSPETEAEREKRLQEEDEWLLNFSRDDPDSHTETFSDPKERQSRARATKDRYDFTCLTVEEVARSYQVPISWVGDALCNFGVVPPIQWTARIGDVIDGDQAFALLEAMHGWDHAIMFDMYTWDSLRELAASHEIPIAKVLQVCDEEGFALPFGLRSHLRVEQYARLMRRLGMAQELTDHIREAHPDPDYPST 322          
BLAST of NO21G01730 vs. NCBI_GenBank
Match: XP_009040959.1 (hypothetical protein AURANDRAFT_67233 [Aureococcus anophagefferens] >EGB04402.1 hypothetical protein AURANDRAFT_67233 [Aureococcus anophagefferens])

HSP 1 Score: 108.2 bits (269), Expect = 5.100e-20
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 0
Query:  212 TVEEVARSYQVPISWVGDALCNFGVVPPIQWTARMGDLIDGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEEGFALPFGLRSHLRLEQYARLMRRLGLARELTDQIKENHPD 341
            TV +VA  Y+ PIS+V DA+  FG+ PPI+  AR+ D++D +QA+ALLEA+   D A + D Y    L  +A   + P+A+V   C +EGF LP G+ + LR EQY  L  R G A    D + + + D
Sbjct:  169 TVADVADDYRFPISYVADAILGFGIPPPIRDDARIADILDADQAFALLEAVTSLDAAEVEDAYVAFDLARVAGLLEAPLAEVFAACVDEGFGLPHGVETQLRREQYEALRSRFGFAAYAPDPLDKVYED 297          
BLAST of NO21G01730 vs. NCBI_GenBank
Match: GAX19470.1 (hypothetical protein FisN_19Hh045 [Fistulifera solaris])

HSP 1 Score: 102.4 bits (254), Expect = 2.800e-18
Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 0
Query:  212 TVEEVARSYQVPISWVGDALCNFGVVPPIQWTARMGDLIDGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEEGFALPFGLRSHLRLEQYARLMRRLG 326
            T++E+   Y VPI ++ D LC +G  PPI    R+GDL+ GEQA+ALLEA++  D A + D Y+  SL ++    ++ +A+  Q+   EG++LPFG+ ++LR+EQ   L+R LG
Sbjct:  144 TLQEICTDYSVPICYIADVLCMWGTEPPIHVHDRLGDLVTGEQAFALLEAVNSLDVAALQDRYSNQSLWQVCQEWEIDLAQGFQMAMTEGWSLPFGVHTNLRVEQENELIRVLG 257          
BLAST of NO21G01730 vs. NCBI_GenBank
Match: GAX16465.1 (hypothetical protein FisN_19Lh045 [Fistulifera solaris])

HSP 1 Score: 100.1 bits (248), Expect = 1.400e-17
Identity = 47/114 (41.23%), Postives = 74/114 (64.91%), Query Frame = 0
Query:  212 TVEEVARSYQVPISWVGDALCNFGVVPPIQWTARMGDLIDGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEEGFALPFGLRSHLRLEQYARLMRRLG 326
            T++E+   Y VPI ++ D LC +   PPI    R+GDL+ GEQA+ALLEA++  D A + D Y+  SL ++    ++ +A+  Q+   EG++LPFG+ ++LR+EQ   L+R LG
Sbjct:  147 TLQEICTDYSVPICYIADVLCMWRTEPPIHMHDRLGDLVTGEQAFALLEAVNSLDVAALQDRYSNQSLWQVCQEWEIDLAQGFQMAMTEGWSLPFGVHTNLRVEQENELIRVLG 260          
BLAST of NO21G01730 vs. NCBI_GenBank
Match: XP_002179174.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC48997.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 97.8 bits (242), Expect = 6.900e-17
Identity = 44/111 (39.64%), Postives = 75/111 (67.57%), Query Frame = 0
Query:  212 TVEEVARSYQVPISWVGDALCNFGVVPPIQWTARMGDLIDGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEEGFALPFGLRSHLRLEQYARLMR 323
            T+ E+A  Y VP+ ++ D LC +GV  PIQ   R+GDL+ GEQA+++LEA++  D + ++D Y+  +L +L A +D+ +    ++  +EG++LPFG+ + LR+EQ   L+R
Sbjct:  165 TLNEIATDYGVPVCYLADVLCMWGVPVPIQVHDRLGDLVTGEQAFSILEAINSLDISALHDRYSNHNLIQLCAEYDIELQTAFEMAMKEGWSLPFGVNTCLRVEQSDELVR 275          
BLAST of NO21G01730 vs. NCBI_GenBank
Match: XP_002293200.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89661.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 96.3 bits (238), Expect = 2.000e-16
Identity = 43/114 (37.72%), Postives = 72/114 (63.16%), Query Frame = 0
Query:  212 TVEEVARSYQVPISWVGDALCNFGVVPPIQWTARMGDLIDGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEEGFALPFGLRSHLRLEQYARLMRRLG 326
            T++E+A  Y VPI ++ D +  +GV  PI    R+GD++ GEQA+++LEA+H  D A +++ Y+ D+L  +   +D+ + +        G+ALPFG+R+ LR+EQ   L+  LG
Sbjct:  296 TLKEIAMDYSVPICYLADVVAGWGVPVPIDPLGRLGDMVTGEQAFSMLEAIHTLDIAALHERYSEDNLVNICDFYDIDLKEAFDFAMTRGWALPFGVRTFLRVEQEEELLEALG 409          
BLAST of NO21G01730 vs. NCBI_GenBank
Match: CBJ28029.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 82.0 bits (201), Expect = 3.900e-12
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 0
Query:  212 TVEEVARSYQVPISWVGDALCNFGVVPPIQWTARMGDLIDGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEEGFALPFGLRSHLRLEQYARLM 322
            ++      Y  P+ +  D LC +GV  PI    R+GD+ID EQA AL EA+ G D A + D Y  DSL +L+   D+P+  + Q C  +   LP G  +H+ +++Y  L+
Sbjct:  183 SINNAVFEYGFPVEFFLDMLCRWGVTLPINQDRRLGDMIDAEQAAALCEALTGLDAADVRDNYLDDSLEDLSFDLDIPLPDLFQACAAQKINLPKGGDTHITIDEYKLLL 292          
BLAST of NO21G01730 vs. NCBI_GenBank
Match: PFH31266.1 (hypothetical protein BESB_031400 [Besnoitia besnoiti])

HSP 1 Score: 77.4 bits (189), Expect = 9.700e-11
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 0
Query:  212 TVEEVARSYQVPISWVGDALCNFGVVPPIQWTARMGDLIDGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEEGFALPFGLRSHLRLEQY 318
            TV  +A  + VP  ++GD LC  GV PPI     + DL D    + L+E +   D A +++MY  D++ ++A   D PI  V   C+     LPFG +S L +E Y
Sbjct:  889 TVRSLAEGFSVPEDFIGDFLCRQGVQPPIPVDVPLKDLTDPAAVWNLVEYLQIQDPAQIHNMYPLDTIEQIAEEFDCPIQHVFDACEALKIKLPFGAQSRLNVECY 994          
BLAST of NO21G01730 vs. NCBI_GenBank
Match: PHJ21067.1 (hypothetical protein CSUI_005091 [Cystoisospora suis])

HSP 1 Score: 75.5 bits (184), Expect = 3.700e-10
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 0
Query:  212 TVEEVARSYQVPISWVGDALCNFGVV-PPIQWTARMGDLIDGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEEGFALPFGLRSHLRLEQYARLMRRL 325
            TV  +A ++ VP  ++GD LC  G+V PPI     + +L D    + L+E +   D A ++DMY  D++  +A   + P+ +VL  CD     LPFG+ S + ++ Y  L + L
Sbjct:  851 TVHSLAEAFAVPEDFIGDFLCRQGMVDPPIPVDVPLRELADPAAVWNLIEYLQLQDPARIHDMYPMDTIEHIAEDFNCPVQRVLDACDALRIKLPFGVSSRVNVDCYGALTKLL 964          
BLAST of NO21G01730 vs. NCBI_GenBank
Match: XP_008887579.1 (hypothetical protein HHA_282150 [Hammondia hammondi] >KEP61749.1 hypothetical protein HHA_282150 [Hammondia hammondi])

HSP 1 Score: 74.7 bits (182), Expect = 6.300e-10
Identity = 39/125 (31.20%), Postives = 65/125 (52.00%), Query Frame = 0
Query:  193 EERKARAAATKNRYDFTCLTVEEVARSYQVPISWVGDALCNFGVVPPIQWTARMGDLIDGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEEGFALPFGLRSHLRLEQY 318
            EERK R     N       TV+ +A ++ VP  ++GD LC  GV PP+     + +L D    + L+E +   D A +++MY  D++ ++A   + P+  ++  C+     LPFG +S L +E Y
Sbjct:  477 EERK-RKYLEGNPNGVVTETVQSLAEAFSVPEDFIGDFLCRQGVQPPVPVDVPLKELTDPAAVWNLVEYLQVQDPAQIHNMYPLDTVEQIAEEFNCPVQYIIDACEALKIKLPFGTQSRLNVECY 600          
The following BLAST results are available for this feature:
BLAST of NO21G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22659.13.700e-9565.71hypothetical protein Naga_100023g6 [Nannochloropsi... [more]
XP_009040959.15.100e-2041.86hypothetical protein AURANDRAFT_67233 [Aureococcus... [more]
GAX19470.12.800e-1842.11hypothetical protein FisN_19Hh045 [Fistulifera sol... [more]
GAX16465.11.400e-1741.23hypothetical protein FisN_19Lh045 [Fistulifera sol... [more]
XP_002179174.16.900e-1739.64predicted protein, partial [Phaeodactylum tricornu... [more]
XP_002293200.12.000e-1637.72predicted protein [Thalassiosira pseudonana CCMP13... [more]
CBJ28029.13.900e-1236.36conserved unknown protein [Ectocarpus siliculosus][more]
PFH31266.19.700e-1135.85hypothetical protein BESB_031400 [Besnoitia besnoi... [more]
PHJ21067.13.700e-1033.33hypothetical protein CSUI_005091 [Cystoisospora su... [more]
XP_008887579.16.300e-1031.20hypothetical protein HHA_282150 [Hammondia hammond... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004607NSK004607Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01730.1NO21G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100023g6gene7765Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01730.1NO21G01730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01730 ID=NO21G01730|Name=NO21G01730|organism=Nannochloropsis oceanica|type=gene|length=1603bp
CAAGAACTAGCACTACTGCAAAGAGAGAGACTTTTTTTCATTTCCCCTCG
TCGCTTACTACCAATAAATTATAGAAAAATATCGCGTAGGACACTGAGAC
AGCAAGGCTGCTCAATCTTGAGAAAACTTTCCCCTAGAAAGCACAAGAAT
TGGGACAGAGGCACCACGTACATACCACACGTCTCTCTGGAAATGTGAAC
AGCTGCACAGCTGCCTCTCGGAACACCACACACGCGAACCTGCTCCGATT
CGTCTCTTTGCCCTGCCCTCTCACGCACTTTGGAACCACGTGCACGTCCC
ACCCACTCATCGCATCGCTCTTTGTCTTTGCCTTCCACAGGTCACTGCGC
CAGTCTTCTAAACTGTGCGTGCTCCTGTTCCTACGTCCACTCACTATGCA
GCAACAAGAAGCAGTAGCAGCACGTGCTTGGAATAGCAGACGCGGCTCCA
CCAAGACTACGACATCTACCTTATCCGTCGCCTTGATGGCCGCGCTCTTG
GCCAGCAGTGTCGTCCCCGAGGCCAGTGCCTTTCTCCCCTTGCACTCCTG
TTCTTGCCTGCCCTCCCCCTCATCATGCCGCAGCAGTGTTGCGAGTCATG
CCAGGACTCCGGTCAGCACCCCCCAAAGCTTCGGCAAGCGCGCACTGGTC
GTGACGGCTACAGCTGCGTCCTCCTCCAACAAGAAAAAATCCACGAAGAA
AGGGCTGCGCGGCGATGTCCTGCGGGATTCCGGCAGCAGCACGAGCCGAC
AGGCCAACGACACGACAGGGTCGGCGGGGGCTGGCTCTGCGTGTGACCCC
AATAACCCTTTCTTTACGTCCGAATTCGGGGAGGATGAAGATGAGAACAC
AGCAGAAGCAGAAGCAGAGACCGAGGCTGAGAAAGAGAAGCGTTTGCAGG
AAGAGGATGAGTGGCTACTGAACTTTAGCCGGGACGACCCCGACTTGTAC
ACTGAGACCTTCTCCAAGCCCGAGGAGCGGAAAGCCCGGGCTGCCGCCAC
CAAGAACCGGTACGACTTTACTTGTCTGACGGTAGAAGAAGTGGCACGGT
CCTATCAAGTACCAATTTCGTGGGTTGGGGACGCGTTATGTAACTTTGGG
GTGGTGCCGCCCATCCAATGGACGGCGCGAATGGGGGATTTAATCGATGG
AGAGCAGGCTTATGCGTTGCTGGAGGCGATGCACGGGTGGGATCACGCCA
TTATGTACGACATGTACACTTGGGACAGCTTGCGGGAGTTGGCAGCCTCG
CACGATTTACCGATTGCGAAGGTGTTGCAGGTTTGTGACGAGGAGGGGTT
TGCCTTGCCATTCGGGCTGAGGAGTCACTTGCGGTTGGAGCAGTACGCGA
GATTGATGCGGCGCCTGGGCCTGGCACGGGAACTGACAGACCAGATCAAG
GAGAATCACCCCGATCCCGATTATCCCTCCACATGAAAAGGGAGGTAGGA
AGGGAGGGACACGTGGGCGAGAGAGCCCCTTCGCATGTACAGTTACTCTT
CGTCGTCGTGAGCAAACGGACGAGCGAAGGCAAGAAAGCAAGAGAGAAGA
GTAATTTAGTAAGAGAGGGAAAAAGCATCAAACGACCGGGCACCCCCAAA
ACT
back to top

protein sequence of NO21G01730.1

>NO21G01730.1-protein ID=NO21G01730.1-protein|Name=NO21G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MQQQEAVAARAWNSRRGSTKTTTSTLSVALMAALLASSVVPEASAFLPLH
SCSCLPSPSSCRSSVASHARTPVSTPQSFGKRALVVTATAASSSNKKKST
KKGLRGDVLRDSGSSTSRQANDTTGSAGAGSACDPNNPFFTSEFGEDEDE
NTAEAEAETEAEKEKRLQEEDEWLLNFSRDDPDLYTETFSKPEERKARAA
ATKNRYDFTCLTVEEVARSYQVPISWVGDALCNFGVVPPIQWTARMGDLI
DGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEE
GFALPFGLRSHLRLEQYARLMRRLGLARELTDQIKENHPDPDYPST*
back to top
Synonyms
Publications