NO21G01690, NO21G01690 (gene) Nannochloropsis oceanica

Overview
NameNO21G01690
Unique NameNO21G01690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2632
Alignment locationchr21:500240..502871 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:500240..502871 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G01690 vs. NCBI_GenBank
Match: EWM22627.1 (hypothetical protein Naga_100023g12 [Nannochloropsis gaditana])

HSP 1 Score: 234.2 bits (596), Expect = 1.200e-57
Identity = 234/727 (32.19%), Postives = 316/727 (43.47%), Query Frame = 0 
Query:    9 HRGADPGAYSSLI-APMPYFNNHQYASGKKTIEESPSLXXXXXXXXXXXXXXXXXXXXEKLSPEAFLPVKLEVKSRAHRQIGSGMSGNLGGEIATSIGNFNIYQGAQGRELELQHMAAPHD-----------TQTHPQP-YISRQQVRGQSQSRLDPRQTARSLATNSSTGQRLGLPFNSIQRTAPKGDKISSTLASQANQHNHNLEESPIPLTTNSNFTSAVIRTTQPRRLGMRCPSTPFQQRHSRTNSTGSSSTVGNIATHRCSDGDSLGSPSLPTFAPPDLSSRAASLSLDSSIQTLRVSSSSEESEVGELGSRHYRSWSYSSSSPNRRTQTNNGGSDKSRLTSDVLSPMS---STSSPSRYRTGSDPYGTRNLGSVAARTSTSVATVPGV--KKVVPDANEKKAPTVRHRG-YTKSSGFLGQLRESSLNLLVNMGIFTPPIPPREESCAFAPIPLPPLTLPDRRPGHHFRSSTNSSASLVNSSA--MEYSLDHSSN----------------------------------TLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAQGMGKDATTWEVQKFLEGGGVEALVRGIETLGGHDPGLAFNLMYVLRVTMMEPQARHQAVSDAKGHILVEHVPAVMEAHLNSTPIFRDGLNIMTILLSDPKTVKLARTLMLTPNTLAMVRKVRDLATPGSRENKLCVDFLTLANS 681
            HRGAD G+YSS I AP PYFNN+ Y+SG K  + S  +                                  + S +H  +   +      E    I  FN+ + + G+E + QH+ A +             Q   QP  +S      Q+ S       AR+LAT+ S+ +RLG+P    QR APK D IS+TLASQA+      ++   P T NSNF+ A++R       G   P        +      S  T      H+    D L    LP       S   A ++L +   +L  SS S   E+   G+    +    +  P              R +S   SP       S P+  R   + YG RNLGSV  RTS SV+    +  K V+P +++       H G  + SSG L QLRE SLN+L NMGI TPP PP E + ++       LTL  +    +++       SL  S A  +EY+LD S N                                                                                +AQG G +A   EV+ F+EGGG+EAL RG+ TL  HDPG AFNL+Y+LRV  M+ +AR + V+D +GH+L+ HVPA+M+ H  S PIFRDGL I+  LL DP T K++  + LT  TLAMVR+V   A PGSRE KLC DFL  ANS
Sbjct:    6 HRGADQGSYSSFIKAPTPYFNNNPYSSGVKDKDSSRQV----------------------------------IVSSSHGALDIPVINTFLDEGTGDI--FNLNEESTGQERQTQHVGAGNGITRNFCKRTLMPQCQQQPRRLSCCGEEIQTSSHAHSFTIARTLATDGSSSKRLGVPHICSQRRAPKEDHISATLASQASLRGS--QKFMSPTTKNSNFSGAIVRAN-----GHEGPENAPGYTSTHVPDLRSEVTDVTGDKHKVIRRDRLHCAKLPH------SMSTADVTLSTPPNSLLTSSPSRCLEISSSGTGRIANNDGDNGLPAACDSKLQRQMWHQRSSSVAHSPTGCGLHRSPPA--RCDYEAYGFRNLGSVGGRTSRSVSAPIKIQGKGVIPHSSQ-------HGGRISTSSGLLCQLREGSLNILANMGIMTPPKPPHELNLSYP--SEQSLTLAQK----NYKCDVTDMDSLKGSRAPEIEYNLDESDNLRLSIRASDVIEGSRRHNGRDNAEESLDQSVASTRFQHWNLPHPPCSGSEVPEPYVSESTAVAASECARTALKMIVRRIMDAQGKGHEAAHGEVRNFIEGGGLEALTRGVGTL-DHDPGTAFNLLYILRVLTMDTEARKRLVTDPEGHVLLGHVPAIMQRHKRSAPIFRDGLGIINTLLEDPVTSKISVNITLTSVTLAMVREVHQSAMPGSREEKLCTDFLRHANS 667
The following BLAST results are available for this feature:
BLAST of NO21G01690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22627.11.200e-5732.19hypothetical protein Naga_100023g12 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004613NSK004613Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01690.1NO21G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602587gene_8128Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g12gene7771Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01690.1NO21G01690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01690 ID=NO21G01690|Name=NO21G01690|organism=Nannochloropsis oceanica|type=gene|length=2632bp
AATTGGCAGTATGGTCGCGCCGGGCCATACTCAAATTCTCTATTATCGTA
CTCGCAATTGCCCACCAAATCCCACAAACTACGTCACAAACACACACCCT
CTGAAGCCAGAAAGTTAACATTCAGCATAAAGCGCATGACGACTGAGTAG
AAAGTCAGAGAGCACGACCAGGACCATATTAGAAAAGGATGGCCGAGCCA
GCGCGACCGCGTCATCGAGGCGCCGACCCGGGTGCTTACTCGTCTCTGAT
CGCTCCCATGCCATATTTCAACAACCATCAATATGCATCTGGGAAGAAGg
tgagcttgtgaatatagttgacagcggctagtgtctagatctttggtctt
gattcggtgaatacccacaccaatactcctcgcaagtgtagtgcggaggc
caagttcatgattgagatctcccctgcaaaatttaagtatttatccccac
ttaccttctggataatcattctctctccataccatatcttcaatctgata
agACGATTGAAGAAAGCCCCTCACTGATCCCAGAGCCGCCTCCCAAGCAA
GACCTGCCACCACCACATCACGAGCGACGCAACAGCGAGAAGTTGAGCCC
CGAAGCATTCCTGCCCGTCAAGCTAGAAGTCAAGAGTCGTGCCCATCGCC
AGATAGGCAGTGGTATGAGCGGAAATTTGGGAGGGGAAATCGCCACTTCA
ATTGGGAATTTTAACATCTACCAAGGCGCCCAGGGCCGGGAGTTGGAGCT
TCAACATATGGCCGCCCCGCATGACACTCAGACTCACCCGCAGCCGTACA
TATCCCGTCAACAAGTGAGGGGCCAAAGCCAGTCACGGCTGGATCCTCGT
CAAACTGCACGTTCCTTGGCTACAAACAGCTCCACGGGCCAGCGCCTCGG
CTTGCCCTTCAACAGCATCCAACGCACGGCCCCGAAAGGCGACAAAATCA
GTTCGACCTTGGCGTCACAGGCCAATCAGCACAATCACAATCTTGAAGAG
AGCCCAATTCCGCTCACCACCAACTCCAATTTCACAAGCGCAGTCATTCG
CACCACCCAGCCACGACGCTTAGGCATGCGCTGCCCAAGCACTCCATTCC
AGCAGAGGCACTCTAGAACGAACAGCACCGGTAGCAGCAGTACAGTCGGA
AACATCGCTACCCACCGGTGCTCAGACGGAGATTCTCTAGGAAGCCCTTC
CCTCCCCACATTTGCGCCACCAGACCTGAGTTCCCGCGCAGCGTCTCTGT
CGCTCGATAGCTCCATCCAAACTCTCCGAGTTTCGTCCTCTTCAGAGGAA
TCGGAAGTCGGGGAATTAGGTAGCCGTCACTATCGAAGTTGGAGCTACTC
GTCATCCTCGCCAAATCGCCGTACCCAAACAAATAATGGTGGCAGCGACA
AGTCAAGGTTGACCTCGGATGTGTTGTCGCCCATGAGTTCTACTTCCTCT
CCCAGCCGCTACCGCACCGGATCGGACCCCTATGGTACGCGTAATCTGGG
CTCTGTGGCCGCCCGCACCAGCACAAGCGTCGCCACCGTCCCTGGCGTCA
AGAAAGTCGTTCCAGATGCAAACGAAAAGAAGGCTCCCACTGTGCGACAT
CGTGGTTACACGAAGTCTTCTGGTTTCCTGGGGCAACTGCGCGAGAGCTC
TTTGAACCTTCTGGTCAACATGGGCATTTTCACCCCCCCCATCCCCCCCC
GGGAGGAGTCGTGCGCCTTCGCTCCTATCCCTCTTCCTCCCTTGACGTTG
CCTGATAGACGACCAGGCCACCATTTTCGATCCTCGACGAACAGCAGCGC
ATCCTTGGTCAATAGCTCAGCGATGGAGTACAGTCTCGACCATAGCAGCA
ACACCCTTAGCCTCTCTTCCTCTGTCTCACACAAAAATGAATGTCTGCGT
GCGGTCACCCGTAGTAGCCTGGACCGTTCTCTTTCCTCGAAGGGCAGCAA
GGCAAAAGAATGCATGGAGGCGATTATTGAGCGGATCATGAATGCACAAG
GCATGGGCAAAGACGCCACCACGTGGGAAGTCCAAAAGTTCTTGGAGGGC
GGTGGGGTGGAGGCTTTGGTCCGTGGCATTGAGACCCTCGGAGGACACGA
TCCCGGCCTAGCCTTCAATCTTATGTACGTCTTGCGTGTAACTATGATGG
AACCCCAGGCCCGTCACCAGGCAGTCAGCGACGCCAAGGGCCACATACTC
GTTGAGCACGTGCCTGCGGTCATGGAAGCACATTTGAACTCCACCCCCAT
TTTCCGTGACGGTCTGAATATTATGACGATTCTCCTTTCCGATCCTAAGA
CCGTCAAGCTTGCCCGGACTCTTATGCTCACCCCTAACACACTAGCGATG
GTGCGAAAGGTCCGCGACTTGGCCACCCCCGGCAGTCGTGAGAACAAGTT
ATGCGTGGACTTCTTGACGCTTGCCAACAGTGACTTCGTGAACTCCTCGT
AGAGGAGATGAGATATATAATTATAGGGAAGCTCGTGAAGAAATATTAGT
CCGCATTTTTGGATCAACGCAAGAACATATTCTTACAATCATTATTCTTG
GAGAGTGGTAGTGAAGGATAATAAGGGGAGAATTTGAAACGCAAAGCAAG
GCTTGGATAAAGTTGAAAGCTCATCCTGCCAT
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protein sequence of NO21G01690.1

>NO21G01690.1-protein ID=NO21G01690.1-protein|Name=NO21G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=687bp
MAEPARPRHRGADPGAYSSLIAPMPYFNNHQYASGKKTIEESPSLIPEPP
PKQDLPPPHHERRNSEKLSPEAFLPVKLEVKSRAHRQIGSGMSGNLGGEI
ATSIGNFNIYQGAQGRELELQHMAAPHDTQTHPQPYISRQQVRGQSQSRL
DPRQTARSLATNSSTGQRLGLPFNSIQRTAPKGDKISSTLASQANQHNHN
LEESPIPLTTNSNFTSAVIRTTQPRRLGMRCPSTPFQQRHSRTNSTGSSS
TVGNIATHRCSDGDSLGSPSLPTFAPPDLSSRAASLSLDSSIQTLRVSSS
SEESEVGELGSRHYRSWSYSSSSPNRRTQTNNGGSDKSRLTSDVLSPMSS
TSSPSRYRTGSDPYGTRNLGSVAARTSTSVATVPGVKKVVPDANEKKAPT
VRHRGYTKSSGFLGQLRESSLNLLVNMGIFTPPIPPREESCAFAPIPLPP
LTLPDRRPGHHFRSSTNSSASLVNSSAMEYSLDHSSNTLSLSSSVSHKNE
CLRAVTRSSLDRSLSSKGSKAKECMEAIIERIMNAQGMGKDATTWEVQKF
LEGGGVEALVRGIETLGGHDPGLAFNLMYVLRVTMMEPQARHQAVSDAKG
HILVEHVPAVMEAHLNSTPIFRDGLNIMTILLSDPKTVKLARTLMLTPNT
LAMVRKVRDLATPGSRENKLCVDFLTLANSDFVNSS*
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Synonyms
Publications