NO21G01660, NO21G01660 (gene) Nannochloropsis oceanica

Overview
NameNO21G01660
Unique NameNO21G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1314
Alignment locationchr21:490627..491940 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:490627..491940 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G01660 vs. NCBI_GenBank
Match: EWM22670.1 (hypothetical protein Naga_100023g43 [Nannochloropsis gaditana])

HSP 1 Score: 142.9 bits (359), Expect = 2.000e-30
Identity = 140/368 (38.04%), Postives = 177/368 (48.10%), Query Frame = 0 
Query:    1 MKGSNGWQRRQRPLRNLCLFASLRRSRAIIIDAQHQKLAETLSAAPAQPPPSAPPFSSARQKYQKHQSICLPAAQEELAELHCQGSQEVKSDSPPPAHGSKRHRPRQEG----DHMSSPPFLSSMPLSCRAVSSXXXXXXXXXXXXXXXXXXPHRQPETPCSADR---AGGGDISIPSQLPTFSLDSPCYDTSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRMATWELFPGPGVLEAVRAKLRQDVVHLKNHGQEGSHRYVMQEMALMVLERDNVEYVVQEVKTEERKKRRGW-RRGRKVGSDTQQLGFALEELQKGVMAPAGLDPRQTHILGLAPDILADISLMVQGYGG 361
            M+    WQRRQRPLRNLCLFASLRRSRA +++ QH   +  L      P    P + S  Q+    Q  C    +      H     + +S+ P  +HG +    R +G     H+  P            +S+                     QPET   +      G GD  +PSQLP FS+ S       G               XXXXXXXXXXXXXXXXX           R+ T  LFP  G L AVRA+  + +  L+  GQE S+ YVMQEMAL VLER+ +EYVV + +   RK R  W RR  K     Q+L  AL+ELQ+G++ P GL P  T  LGL  D+LA+ISL  QGY G
Sbjct:    1 MERGTHWQRRQRPLRNLCLFASLRRSRA-MMETQHIP-SGALETVRTAPKGRLPDYQSPGQEQNGSQIHC----RLRREGCHRYSESQEESNRPLFSHGDRGQGERADGRSPHPHLCPPXXXXXXXXXXSQLSTHTPL-----------------QPETQLPSAEITPTGMGDNGLPSQLPIFSVTSEDDTNLCGSGNRLVEIRATPSHPXXXXXXXXXXXXXXXXXASVGTWKASAFRVPTANLFPVHGELSAVRARQSEQLATLRARGQESSYLYVMQEMALRVLEREELEYVVVKNEDRRRKGRVWWGRRKCKSADGPQELNRALKELQRGLLDPVGLGP-NTRFLGLTSDVLAEISLFAQGYQG 344
The following BLAST results are available for this feature:
BLAST of NO21G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22670.12.000e-3038.04hypothetical protein Naga_100023g43 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL025nonsL025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR060ngnoR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004642NSK004642Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01660.1NO21G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602574gene_8124Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g43gene7799Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01660.1NO21G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01660 ID=NO21G01660|Name=NO21G01660|organism=Nannochloropsis oceanica|type=gene|length=1314bp
ATGAAAGGCAGTAACGGGTGGCAGCGGCGGCAGCGGCCTTTGCGAAACCT
GTGCCTGTTCGCATCCCTACGACGGAGCCGGGCAATAATAATAGACGCCC
AGCACCAGAAGCTTGCTGAAACACTCTCCGCGGCACCAGCACAACCACCA
CCATCCGCGCCACCCTTTTCCTCTGCACGACAGAAATATCAGAAGCATCA
ATCAATATGTCTCCCCGCAGCTCAGGAAGAGCTTGCAGAGCTTCATTGCC
AGGGGTCGCAAGAGgtacgccggaaaggtgatgggacatgtgattgagaa
caacctggcgacgacaactcaagagaggccacgaaaaaccgcataactat
agccagatttgttcagtgtttgactcttctcatgtccacttgcaccaccc
ctgccttgctcgtctcacctcccctcgcccaatcctctcccacgcacacc
aactaatagGTAAAGTCAGATAGCCCTCCTCCCGCCCACGGCAGTAAGCG
GCACAGGCCAAGGCAAGAAGGCGACCACATGAGTTCTCCCCCCTTTCTGT
CGTCCATGCCGCTATCCTGTAGGGCTGTCTCCTCCTCTTCTTTTCATTAC
CATCACCACTGGAGCTACTCTCACAACCGCCACCATTACCCTCACCGGCA
GCCCGAGACACCATGTAGCGCTGACCGTGCAGGAGGGGGAGATATTTCAA
TACCATCACAACTGCCAACCTTTAGCCTCGATTCCCCATGTTACGATACG
AGTGCTGGCGCTGGTGGCGGTGGTCATTTGGTGCTGTTGCCAGCGACGGA
CACGCAAGGTCCTCTCTCTCTCCGAATGCAGGCAGAAGAGGAGGAAGAAG
AAGCAGAAAAAGACTTCGCTGCTACTACCAGTACTTCCCGTATGGCGACC
TGGGAGCTATTTCCCGGTCCGGGGGTACTAGAGGCTGTGCGTGCAAAGCT
GAGACAAGACGTTGTGCATCTTAAAAATCACGGACAGGAAGGGTCTCATC
GCTACGTGATGCAAGAAATGGCTTTGATGGTTCTAGAGAGAGACAATGTG
GAATATGTCGTTCAAGAAGTGAAGACAGAGGAGAGAAAAAAGAGGAGGGG
TTGGAGGAGAGGGAGAAAAGTGGGGAGTGACACTCAACAGTTGGGATTTG
CCCTTGAAGAACTACAAAAGGGAGTGATGGCGCCTGCGGGGTTGGATCCA
CGACAAACGCATATTTTGGGCCTTGCTCCTGATATTTTGGCGGATATAAG
TCTGATGGTGCAGGGATATGGAGGGGAGCAGGAGCAGGAGAGATGGGTGC
GTGGTGAGGGATGA
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protein sequence of NO21G01660.1

>NO21G01660.1-protein ID=NO21G01660.1-protein|Name=NO21G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MKGSNGWQRRQRPLRNLCLFASLRRSRAIIIDAQHQKLAETLSAAPAQPP
PSAPPFSSARQKYQKHQSICLPAAQEELAELHCQGSQEVKSDSPPPAHGS
KRHRPRQEGDHMSSPPFLSSMPLSCRAVSSSSFHYHHHWSYSHNRHHYPH
RQPETPCSADRAGGGDISIPSQLPTFSLDSPCYDTSAGAGGGGHLVLLPA
TDTQGPLSLRMQAEEEEEEAEKDFAATTSTSRMATWELFPGPGVLEAVRA
KLRQDVVHLKNHGQEGSHRYVMQEMALMVLERDNVEYVVQEVKTEERKKR
RGWRRGRKVGSDTQQLGFALEELQKGVMAPAGLDPRQTHILGLAPDILAD
ISLMVQGYGGEQEQERWVRGEG*
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Synonyms
Publications