NO21G01640, NO21G01640 (gene) Nannochloropsis oceanica

Overview
NameNO21G01640
Unique NameNO21G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length549
Alignment locationchr21:486055..486603 -

Link to JBrowse

Properties
Property NameValue
DescriptionPeptidase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:486055..486603 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Homology
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BLAST of NO21G01640 vs. NCBI_GenBank
Match: EWM22638.1 (peptidase [Nannochloropsis gaditana])

HSP 1 Score: 121.3 bits (303), Expect = 3.100e-24
Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 0 
Query:   29 EHRIAYKTIKRLILFELGPKPVDEAQAAEKTTAIAPPAPLFCDALLRHVTGRWMKWLSSIRGGFLVEALVKVPVVGPKVMKELAPHEAELKELA-ITFKGAAAVRDIM 136
            EHRIAYKTIKRLILFE+GPKP  + +    T     P PLF +AL    TGRWM WL+SIRGGFLVEALVKVP VG +VM EL P E EL+ LA  + KGA+AV  +M
Sbjct:  626 EHRIAYKTIKRLILFEVGPKPGKKPE-CPATPLEKLPTPLFSEALYEECTGRWMDWLASIRGGFLVEALVKVPAVGVRVMDELHPKENELRRLASSSLKGASAVLAMM 732
The following BLAST results are available for this feature:
BLAST of NO21G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22638.13.100e-2462.04peptidase [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL025nonsL025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR060ngnoR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004640NSK004640Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01640.1NO21G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532628gene_8122Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g41gene7797Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01640.1NO21G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01640 ID=NO21G01640|Name=NO21G01640|organism=Nannochloropsis oceanica|type=gene|length=549bp
ATGGCGAAGGGTAAGAATGAGAACGGAAAATCCGCGCCAACAAAATATAA
AGAGGTTGAGAATGAGAATGCTGGCCCTCCATACGAGCATCGGATTGCAT
ACAAGACAATCAAACGCCTGATTCTTTTCGAACTCGGCCCCAAGCCGGTC
GACGAAGCCCAAGCAGCAGAAAAAACAACAGCGATTGCCCCGCCTGCGCC
TCTGTTTTGCGACGCGCTCCTTCGCCATGTGACGGGTCGTTGGATGAAGT
GGCTGTCTTCGATCCGTGGTGGATTTTTGGTGGAGGCTTTGGTGAAGGTT
CCTGTGGTGGGACCTAAGGTAATGAAAGAGCTAGCCCCACACGAAGCGGA
GTTAAAAGAGTTGGCAATCACATTCAAGGGCGCGGCGGCGGTGCGTGATA
TCATGGTGGGTGGGGCGAAGACACCGCCGAAAGAGACGGGGGCTTGGCCC
GCTCAAGGAGTAGCAGGAGGAGGATCGGGAGGAGGGAAGGCGGCAGTTGG
CGGGGCGGGGTCCGGGAGGAAAAGCAAAGGGGGGAAAGGCAAGAAGTAG
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protein sequence of NO21G01640.1

>NO21G01640.1-protein ID=NO21G01640.1-protein|Name=NO21G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MAKGKNENGKSAPTKYKEVENENAGPPYEHRIAYKTIKRLILFELGPKPV
DEAQAAEKTTAIAPPAPLFCDALLRHVTGRWMKWLSSIRGGFLVEALVKV
PVVGPKVMKELAPHEAELKELAITFKGAAAVRDIMVGGAKTPPKETGAWP
AQGVAGGGSGGGKAAVGGAGSGRKSKGGKGKK*
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Synonyms
Publications