NO21G01190, NO21G01190 (gene) Nannochloropsis oceanica

Overview
NameNO21G01190
Unique NameNO21G01190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1586
Alignment locationchr21:362427..364012 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger, CW-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:362427..364012 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011124Znf_CW
Homology
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BLAST of NO21G01190 vs. NCBI_GenBank
Match: EWM22643.1 (Zinc finger, CW-type [Nannochloropsis gaditana])

HSP 1 Score: 271.9 bits (694), Expect = 3.400e-69
Identity = 139/253 (54.94%), Postives = 180/253 (71.15%), Query Frame = 0 
Query:  134 AAAETPLTIALPGGAQGFRAALLARNWVVKSSGKARMEEGLFIALLLDHKRIPFTIVQSMQKRSGFDPNLHDSVLFFHRRGKKLAGSFGAVMKESWSVWNRAAYDCYAEKDRGAAEAFQHFLEDEVFEWLECEVCKRWRMYPVDDVVLPSEHSFFVCDLAGSWNPAIKGCETEQEYSTDSVST--TANSIVSPI--SATPAADNDEESDKLTLARAATGVADAAPAA-----PKEKGMEGEGEGGGELRGGDA 378
            A A+ PLT+ALPGGA+GFRA LL+RNW+ K+ GK + EEGLF+A+L+DH RIP    +S+++  GFDP  HDSV+FF R+G++LAG+FGAV++ESWS+WN+AAY+C+A +DRGAAEAFQ FLE EVF WLECE C RWRMYP +DV+LP E S FVCDLA SWNPAI+GC+TEQE+S DSV T  T +S  +PI  +  PA     E+   T      G A +  A       K++G + +  G G    G+A
Sbjct:   87 AVADAPLTVALPGGAEGFRAPLLSRNWIHKTGGKVKTEEGLFMAILVDHARIPLPTAESLRRSLGFDPLAHDSVIFFERKGRRLAGNFGAVVRESWSMWNKAAYECFAARDRGAAEAFQDFLEGEVFGWLECEACGRWRMYPREDVLLPREGSVFVCDLAYSWNPAIQGCQTEQEFSIDSVGTGSTNSSTAAPILPAERPAIPKQFEAQIDTAHAERLGGASSVTARRLLGNSKDEGKQWKERGKGSEGLGEA 339
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BLAST of NO21G01190 vs. NCBI_GenBank
Match: XP_005853372.1 (hypothetical protein NGA_0712700 [Nannochloropsis gaditana CCMP526] >EKU22988.1 hypothetical protein NGA_0712700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 213.0 bits (541), Expect = 1.900e-51
Identity = 111/211 (52.61%), Postives = 145/211 (68.72%), Query Frame = 0 
Query:  176 IALLLDHKRIPFTIVQSMQKRSGFDPNLHDSVLFFHRRGKKLAGSFGAVMKESWSVWNRAAYDCYAEKDRGAAEAFQHFLEDEVFEWLECEVCKRWRMYPVDDVVLPSEHSFFVCDLAGSWNPAIKGCETEQEYSTDSVST--TANSIVSPI--SATPAADNDEESDKLTLARAATGVADAAPAA-----PKEKGMEGEGEGGGELRGGDA 378
            +A+L+DH RIP    +S+++  GFDP  HDSV+FF R+G++LAG+FGAV++ESWS+WN+AAY+C+A +DRGAAEAFQ FLE EVF WLECE C RWRMYP +DV+LP E S FVCDLA SWNPAI+GC+TEQE+S DSV T  T +S  +PI  +  PA     E+   T      G A +  A       K++G + +  G G    G+A
Sbjct:    1 MAILVDHARIPLPTAESLRRSLGFDPLAHDSVIFFERKGRRLAGNFGAVVRESWSMWNKAAYECFAARDRGAAEAFQDFLEGEVFGWLECEACGRWRMYPREDVLLPREGSVFVCDLAYSWNPAIQGCQTEQEFSIDSVGTGSTNSSTAAPILPAERPAIPKQFEAQIDTAHAERLGGASSVTARRLLGNSKDEGKQWKERGKGSEGLGEA 211
The following BLAST results are available for this feature:
BLAST of NO21G01190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22643.13.400e-6954.94Zinc finger, CW-type [Nannochloropsis gaditana][more]
XP_005853372.11.900e-5152.61hypothetical protein NGA_0712700 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004663NSK004663Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01190.1NO21G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673391gene_8075Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g65gene7818Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01190.1NO21G01190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01190 ID=NO21G01190|Name=NO21G01190|organism=Nannochloropsis oceanica|type=gene|length=1586bp
GGATAAGCAAGGGCCAGGGCAGGGAGATTGGGATTACAAGTTTATACTCT
GGTGGTCTCATCGCGATGGCCCCAGCCGGACAAGGTCACTCACAGGCAAA
TGGGATAGCAGGATGATGATTTAAATTGCCCGGCTTTGACGAATAATGCT
CGACTCCAGGCAATTGACGCCAGGGCAACCTCCCCACCATACCCACACAC
ACCCCAACCCACAACTCACACAACCCCACGGCCCACCCTACGCAATGCCA
CCAGGATCAGTAGTAAACGACTGGGGAAATACTTTGGTCTCTACGGAGAC
TGCGGACTTGAAAATGCCATTTCGTCACGCCCTTTTTGTGCGGGGTGGCG
CGTCTCCTTCTCCCCAGCAAACCTCATCATCCCCTTCATCTGAGACACAA
CAAGCCTTGCCGTCACAACCCTCACCGATACGGCCGGTCAAAACTGCCAA
GCCTATCACTCAAGAACATTCCTCTATACTCATGACCGAGAAGACCACCT
GCAGCGTGCGCTCTCTCCGCTCCCAGCCCCTCTCCCTCCAAGCAGCGGCA
GCAGAGACTCCCTTGACAATAGCATTACCAGGAGGTGCCCAAGGCTTTCG
CGCCGCCCTTCTTGCCCGCAATTGGGTGGTCAAATCATCGGGTAAAGCTA
GGATGGAAGAAGGGTTGTTTATTGCTTTATTGCTCGACCACAAACGCATC
CCTTTTACCATTGTGCAATCCATGCAGAAGAGATCGGGTTTTGACCCGAA
CTTGCATGACTCCGTCTTGTTCTTCCACCGTCGAGGGAAGAAACTGGCGG
GCAGCTTCGGGGCTGTGATGAAGGAGAGCTGGTCTGTTTGGAATCGAGCG
GCGTATGATTGCTACGCGGAGAAGGATCGAGGTGCCGCAGAGGCTTTTCA
GCATTTCCTGGAGGACGAGGTGTTCGAGTGGTTGGAGTGTGAGGTCTGTA
AGAGGTGGAGGATGTATCCCGTGGATGACGTGGTGCTACCGAGTGAACAC
TCGTTTTTTGTGTGCGACTTGGCGGGGAGTTGGAATCCGGCCATCAAGGG
TTGTGAGACTGAACAGGAATACTCAACCGACAGTGTGAGTACTACCGCGA
ATAGCATTGTTAGCCCCATTTCGGCTACTCCTGCTGCTGATAATGATGAA
GAGTCAGATAAGCTGACTCTTGCACGTGCTGCTACAGGTGTTGCTGATGC
TGCACCCGCTGCACCCAAGGAAAAGGGTATGGAGGGAGAGGGGGAGGGAG
GGGGGGAGCTGCGTGGTGGTGATGCAGCATTGGTAGTGGCTGCGGTAACG
AGGGCGTTGGAGTTTACGCGTGGAGTGGAGAAAGATAAATACAACGAGGA
AGATGGGGAGGGTTGCGGGGAGGGGGGGAAAGAGAAAGCTGTATCGAGTA
TCGACGTGGATGAGCAGGTAGAGGAAGAAGGGAGGGGAGAGGAGGAGAAG
GGGGAGAGGGAGGGGTGAGAAGGAGGCAGTGAGATGGAAGAGCGCGCGAG
GTGAAGGATATGTACATTTGTAAATCTTCAAAGACAAAGTAAAGCACGTG
TACAACACAGAAGAAAAAAAGTGATAATAACAGGGA
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protein sequence of NO21G01190.1

>NO21G01190.1-protein ID=NO21G01190.1-protein|Name=NO21G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MLDSRQLTPGQPPHHTHTHPNPQLTQPHGPPYAMPPGSVVNDWGNTLVST
ETADLKMPFRHALFVRGGASPSPQQTSSSPSSETQQALPSQPSPIRPVKT
AKPITQEHSSILMTEKTTCSVRSLRSQPLSLQAAAAETPLTIALPGGAQG
FRAALLARNWVVKSSGKARMEEGLFIALLLDHKRIPFTIVQSMQKRSGFD
PNLHDSVLFFHRRGKKLAGSFGAVMKESWSVWNRAAYDCYAEKDRGAAEA
FQHFLEDEVFEWLECEVCKRWRMYPVDDVVLPSEHSFFVCDLAGSWNPAI
KGCETEQEYSTDSVSTTANSIVSPISATPAADNDEESDKLTLARAATGVA
DAAPAAPKEKGMEGEGEGGGELRGGDAALVVAAVTRALEFTRGVEKDKYN
EEDGEGCGEGGKEKAVSSIDVDEQVEEEGRGEEEKGEREG*
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Synonyms
Publications