NO21G00910, NO21G00910 (gene) Nannochloropsis oceanica

Overview
NameNO21G00910
Unique NameNO21G00910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1508
Alignment locationchr21:299546..301053 -

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Properties
Property NameValue
DescriptionTranscription initiation factor tfiid subunit 13
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:299546..301053 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0008135translation factor activity, RNA binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription by RNA polymerase II
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003195TFIID-18
Homology
[Close]
BLAST of NO21G00910 vs. NCBI_GenBank
Match: EWM22584.1 (transcription initiation factor tfiid subunit 13 [Nannochloropsis gaditana])

HSP 1 Score: 174.9 bits (442), Expect = 1.600e-40
Identity = 96/122 (78.69%), Postives = 107/122 (87.70%), Query Frame = 0 
Query:    1 MAGRGSNLSTS--QQAISAAPPQKKEKGLQNDLVKMVYGYGDEKQPMQESIDLLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDLLEADEELRDARDPKVKKLTE 121
            MAGR ++ S+S   QA++A+   K+ KGL+NDLVKMVYGYGDEKQPMQES+DLLD LVKEYLEEMC QA EVA L +RDVQTSDFIFLIRKD RRYKRMKDLLEADEELRDARDPKVKK+TE
Sbjct:    1 MAGRNAHSSSSIPPQAVAAS---KQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDARDPKVKKMTE 119
[Close]
BLAST of NO21G00910 vs. NCBI_GenBank
Match: XP_014776580.1 (PREDICTED: transcription initiation factor TFIID subunit 13-like [Octopus bimaculoides])

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-12
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 0 
Query:   18 APPQKKEKGLQNDLVKMVYGYGDEKQPMQESIDLLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDLLEADEELRDAR 112
            +P +K++K    +L  M+YG+GD++ P  ES+DLL+ LV EY+ EM  +A EV    +  +Q  D IFLIRKD ++Y R+K+LL  +EELR AR
Sbjct:   18 SPLEKRKKIFSKELRCMMYGFGDDQNPYTESVDLLEDLVVEYITEMTKKAMEVGRPGR--IQVEDIIFLIRKDAKKYSRVKELLTMNEELRKAR 109
[Close]
BLAST of NO21G00910 vs. NCBI_GenBank
Match: XP_003743164.1 (PREDICTED: transcription initiation factor TFIID subunit 13 [Galendromus occidentalis])

HSP 1 Score: 80.9 bits (198), Expect = 3.100e-12
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 0 
Query:   22 KKEKGLQNDLVKMVYGYGDEKQPMQESIDLLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDLLEADEELRDAR 112
            ++++    +L  M+YG+GD+KQP  E++DLL+ LV E++ ++C +A E+    +  VQ  D IFL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   19 QRKRLFSKELCAMMYGFGDDKQPYMETVDLLEELVIEFITDLCHRAMEIGRPGR--VQVEDIIFLVRKDPRKYARVKDLLTMNEELKKAR 106
[Close]
BLAST of NO21G00910 vs. NCBI_GenBank
Match: KOF82596.1 (hypothetical protein OCBIM_22025109mg [Octopus bimaculoides])

HSP 1 Score: 80.1 bits (196), Expect = 5.200e-12
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 0 
Query:   18 APPQKKEKGLQNDLVK-MVYGYGDEKQPMQESIDLLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDLLEADEELRDAR 112
            +P +K++K    + V+ M+YG+GD++ P  ES+DLL+ LV EY+ EM  +A EV    +  +Q  D IFLIRKD ++Y R+K+LL  +EELR AR
Sbjct:   18 SPLEKRKKIFSKESVRCMMYGFGDDQNPYTESVDLLEDLVVEYITEMTKKAMEVGRPGR--IQVEDIIFLIRKDAKKYSRVKELLTMNEELRKAR 110
[Close]
BLAST of NO21G00910 vs. NCBI_GenBank
Match: OQR74074.1 (transcription initiation factor TFIID subunit 13-like [Tropilaelaps mercedesae])

HSP 1 Score: 79.7 bits (195), Expect = 6.800e-12
Identity = 38/90 (42.22%), Postives = 63/90 (70.00%), Query Frame = 0 
Query:   22 KKEKGLQNDLVKMVYGYGDEKQPMQESIDLLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDLLEADEELRDAR 112
            ++++    +L  M+YG+GD++QP  E++DLL+ LV E++ ++C +A E+    +  +Q  D IFL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:    5 QRKRLFSKELCAMMYGFGDDRQPFMETVDLLEELVIEFITDLCHRAMEIGRPGR--IQVEDIIFLVRKDPRKYARVKDLLTMNEELKKAR 92
[Close]
BLAST of NO21G00910 vs. NCBI_GenBank
Match: XP_020426777.1 (transcription initiation factor TFIID subunit [Heterostelium album PN500] >EFA74643.1 transcription initiation factor TFIID subunit [Heterostelium album PN500])

HSP 1 Score: 79.3 bits (194), Expect = 8.900e-12
Identity = 38/95 (40.00%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:   17 AAPPQKKEKGLQNDLVKMVYGYGDEKQPMQESIDLLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDLLEADEELRDAR 112
            ++ P K+ +    DL  M+YG+GD + P+ +++DLL+ +V EY++EM L+A +V+    R  QT D +FL+RKD ++Y R+ +LL+ +EEL+ A+
Sbjct:  125 SSQPSKRRRTFTKDLKHMMYGFGDVRDPLPDTVDLLEEIVFEYIQEMTLKAAQVSTKRGR-FQTEDLVFLVRKDAKKYHRVIELLKMNEELKKAK 218
[Close]
BLAST of NO21G00910 vs. NCBI_GenBank
Match: XP_022644221.1 (transcription initiation factor TFIID subunit 13-like [Varroa destructor] >XP_022644222.1 transcription initiation factor TFIID subunit 13-like [Varroa destructor] >XP_022705836.1 transcription initiation factor TFIID subunit 13-like [Varroa jacobsoni])

HSP 1 Score: 79.3 bits (194), Expect = 8.900e-12
Identity = 38/90 (42.22%), Postives = 63/90 (70.00%), Query Frame = 0 
Query:   22 KKEKGLQNDLVKMVYGYGDEKQPMQESIDLLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDLLEADEELRDAR 112
            ++++    +L  M+YG+GD++QP  E++DLL+ LV E++ ++C +A E+    +  +Q  D IFL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   19 QRKRLFSKELCAMMYGFGDDRQPYMETVDLLEELVIEFITDLCHRAMEIGRPGR--IQVEDIIFLVRKDPRKYARVKDLLTMNEELKKAR 106
[Close]
BLAST of NO21G00910 vs. NCBI_GenBank
Match: XP_014217368.1 (transcription initiation factor TFIID subunit 13 isoform X1 [Copidosoma floridanum])

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-11
Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 0 
Query:   11 SQQAISAAPPQKKEKGLQNDLVKMVYGYGDEKQPMQESIDLLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDLLEADEELRDAR 112
            S+  I A+    +++    +L  M+YG+GD++ P  ES+DLL+ LV EY+ EM  +A E+    +  VQ  D +FL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   15 SEMPIGASLTSARKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDSRKYARVKDLLTMNEELKKAR 113
[Close]
BLAST of NO21G00910 vs. NCBI_GenBank
Match: XP_014217369.1 (transcription initiation factor TFIID subunit 13 isoform X2 [Copidosoma floridanum])

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-11
Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 0 
Query:   11 SQQAISAAPPQKKEKGLQNDLVKMVYGYGDEKQPMQESIDLLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDLLEADEELRDAR 112
            S+  I A+    +++    +L  M+YG+GD++ P  ES+DLL+ LV EY+ EM  +A E+    +  VQ  D +FL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   15 SEMPIGASLTSARKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDSRKYARVKDLLTMNEELKKAR 113
[Close]
BLAST of NO21G00910 vs. NCBI_GenBank
Match: XP_014274231.1 (transcription initiation factor TFIID subunit 13 [Halyomorpha halys])

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-11
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 0 
Query:   19 PPQKKEKGLQNDLVKMVYGYGDEKQPMQESIDLLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDLLEADEELRDAR 112
            P   K++    +L  M+YG+GD++ P  ES+DLL+ LV EY+ +M  QA E+    +  VQ  D IFL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   18 PLSGKKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITDMTHQAMEIGRTGR--VQVEDIIFLVRKDQRKYARVKDLLTMNEELKKAR 108
The following BLAST results are available for this feature:
BLAST of NO21G00910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22584.11.600e-4078.69transcription initiation factor tfiid subunit 13 [... [more]
XP_014776580.11.100e-1246.81PREDICTED: transcription initiation factor TFIID s... [more]
XP_003743164.13.100e-1244.44PREDICTED: transcription initiation factor TFIID s... [more]
KOF82596.15.200e-1246.32hypothetical protein OCBIM_22025109mg [Octopus bim... [more]
OQR74074.16.800e-1242.22transcription initiation factor TFIID subunit 13-l... [more]
XP_020426777.18.900e-1240.00transcription initiation factor TFIID subunit [Het... [more]
XP_022644221.18.900e-1242.22transcription initiation factor TFIID subunit 13-l... [more]
XP_014217368.11.200e-1142.57transcription initiation factor TFIID subunit 13 i... [more]
XP_014217369.11.200e-1142.57transcription initiation factor TFIID subunit 13 i... [more]
XP_014274231.11.200e-1146.24transcription initiation factor TFIID subunit 13 [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004702NSK004702Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00910.1NO21G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602306gene_8046Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100155g10gene7851Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00910.1NO21G00910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00910 ID=NO21G00910|Name=NO21G00910|organism=Nannochloropsis oceanica|type=gene|length=1508bp
CTCGTCGTCGTATGATTTTGGTGTGGTTTACTATTCATGTGCTTCTTTCT
ATTATTTTTTCCCCTGCATGGGCCACTTCCGTCAAAATACCTGAACAATG
TAAGCTTCCTCAAACTTAGCTTCCGATCACTAGGATTGCGGTGTCCCGTA
CAAGGATTGAACATGAATCGACTTTTCATCGTGGTTAATGCCACCTTACA
ATCTTATGGAAGTGCGACGCTAGATTGATATTGAAGTCACGTGTACTGTC
CAGTAAGGTCTCAAACTGGCCGCATTTCGGACCTCACAGGTTGAAGCAGG
CTATCAATGTTTTCCTCCATGGCCAAAGCAACAGATAAGTGGCAAGCCGT
AAACCATTTACGTGAAGAGAGCAAACATTAGCAAAGTTCTTGACATGCCC
CTTTTGTATCTCACGCGGAACATCCCTCGCACCGGTGCGTTCCGTCACCG
CGTTCGCCGTGCTTCGCTCGCCTAGCCTCGCACTCCGAGTTGTCCTCCAC
CATGCCCTCACGACGCATTCACAAGTCTTCTTGTTCAACCCATTCCATCC
AATCACGCCACTATTGACCATACAGGACCCACGTAAGTCCCGACCCCCTT
CACGCGAATAACGGAGAGAATGGCCGGCCGCGGCAGCAACCTTTCGACCT
CTCAACAAGCCATCTCGGCCGCCCCCCCCCAAAAGAAAGAAAAGGGTCTG
CAAAATGACTTGGTGAAGATGGTGTACGGGTACGGAGACGAAAAACAGCC
CATGCAGGAGTCAATCGACCTGTTGGACAGTCTGGTGAAGGAGTACTTGG
AGGAAATGTGCCTGCAGgtgaattacatgggatgcgaggggggagaagag
ggttgcgatatgtatgaagccgttccggtttggcctgtggacgacaggca
tacttgtctgccggcatattttgtatctatgtggtggctgactgatgggg
ctgtggtcgcaattcctcatggaagtctggtaatggggtaatggcaaagc
agatcggtagtgatgatgcttgatctatctgcgcacgtctcttccatctg
ggaatgactgaattgttttttttgcgctcggatctttcaaggttctcgct
cactcggtatgatgttgtaaaaagacaattttcccccacatacacaacca
acctatcagcctccttccctccctccctccctccctccctccctcccctt
cgcacagGCCTACGAAGTTGCCTTACTCTCCCAACGCGACGTCCAGACCA
GCGATTTTATTTTCTTGATCCGCAAGGACGTTCGGCGCTACAAACGAATG
AAAGATTTACTCGAAGCAGACGAGGAGCTGCGTGATGCCCGTGACCCGAA
AGTGAAGAAACTAACCGAGGCTTAGGGGAGGAAGAGATAAATGGATGGAG
GGAGGACTAAATCAGCAGATGCATGTATATAGGGTAGCCGAGGCGACCAG
GTCAACATAAATTGGACAAGCGTAGATCCGCCGCAACATCAATTTTAAAT
CACCTCTT
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protein sequence of NO21G00910.1

>NO21G00910.1-protein ID=NO21G00910.1-protein|Name=NO21G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MAGRGSNLSTSQQAISAAPPQKKEKGLQNDLVKMVYGYGDEKQPMQESID
LLDSLVKEYLEEMCLQAYEVALLSQRDVQTSDFIFLIRKDVRRYKRMKDL
LEADEELRDARDPKVKKLTEA*
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Synonyms
Publications