NO21G00870, NO21G00870 (gene) Nannochloropsis oceanica

Overview
NameNO21G00870
Unique NameNO21G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length420
Alignment locationchr21:289026..289445 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:289026..289445 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO21G00870 vs. NCBI_GenBank
Match: EWM22583.1 (hypothetical protein Naga_100155g6 [Nannochloropsis gaditana])

HSP 1 Score: 148.7 bits (374), Expect = 1.400e-32
Identity = 77/131 (58.78%), Postives = 100/131 (76.34%), Query Frame = 0 
Query:   12 DYSINATTPSSLGSTRGYPNVVATPH--TGLLYPRPFAARLFPHPDDSLLTSSIKLGNVVTGLSLGLASARGGLAALLAPNARRTAFIHGFAATFPIYFPTFLLGAFADHALRKGQGE-ERQRRTYEYDLP 140
            D   +A +   L S R YP V+A  H  + LL+P P+AA +FPH DDSL+TSS+KLGN+ TGL+  LA ARGGL+A+L+P+ARR AF++GFAATFP+Y P FL+GAFADHA+RK  G+  R+ R+YEYDLP
Sbjct:   16 DRDPHAPSSFELQSPR-YPKVIAKKHASSSLLHPSPWAANVFPHSDDSLVTSSVKLGNLATGLAFTLAVARGGLSAILSPHARRAAFVYGFAATFPLYLPAFLMGAFADHAMRKAPGKGVRRTRSYEYDLP 145
The following BLAST results are available for this feature:
BLAST of NO21G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22583.11.400e-3258.78hypothetical protein Naga_100155g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004706NSK004706Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00870.1NO21G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100155g6gene7856Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00870.1NO21G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00870 ID=NO21G00870|Name=NO21G00870|organism=Nannochloropsis oceanica|type=gene|length=420bp
ATGCAATCGCCAGCGGAGAAGGATGAGGACAACGACTACAGCATCAATGC
CACGACTCCATCGTCGCTCGGCTCCACACGCGGTTACCCCAATGTCGTTG
CTACACCTCACACCGGCCTCTTATACCCCCGCCCCTTTGCCGCACGCCTT
TTCCCGCATCCTGACGATAGTCTCTTGACGAGCAGTATCAAGCTGGGTAA
CGTAGTCACGGGGCTTTCGCTTGGTTTGGCCTCAGCACGAGGGGGCCTCG
CGGCACTCCTTGCCCCGAATGCCCGTCGTACTGCCTTCATACATGGGTTT
GCTGCGACATTTCCAATCTATTTCCCAACTTTTTTGTTGGGGGCCTTTGC
GGATCATGCGTTGAGGAAGGGACAGGGGGAAGAGAGGCAGCGACGCACAT
ATGAGTATGATTTGCCATGA
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protein sequence of NO21G00870.1

>NO21G00870.1-protein ID=NO21G00870.1-protein|Name=NO21G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MQSPAEKDEDNDYSINATTPSSLGSTRGYPNVVATPHTGLLYPRPFAARL
FPHPDDSLLTSSIKLGNVVTGLSLGLASARGGLAALLAPNARRTAFIHGF
AATFPIYFPTFLLGAFADHALRKGQGEERQRRTYEYDLP*
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Synonyms
Publications