NO21G00840, NO21G00840 (gene) Nannochloropsis oceanica

Overview
NameNO21G00840
Unique NameNO21G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2754
Alignment locationchr21:281754..284507 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:281754..284507 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO21G00840 vs. NCBI_GenBank
Match: EWM22589.1 (hypothetical protein Naga_100155g3 [Nannochloropsis gaditana])

HSP 1 Score: 87.4 bits (215), Expect = 6.100e-14
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 0 
Query:  127 LRTAGWVVVVLSLGVLAVLSAYLGLVATIAPPLITLNPSAVQNLLIDGPYLNAVVSFDGIVDNKSRFKVHIEDPAVHVSYHGAALGMVR 216
            LR   +   +L+L  LA+L AYLG+VATI PP ITL PS +++L  DGPY+NAVVS    ++NKS F+V I+   V ++YH AALGMV+
Sbjct:  116 LRFVIYTGCLLTLFFLALLFAYLGMVATIPPPFITLQPSTLKHLAFDGPYMNAVVSLGAEIENKSNFQVTIQASTVLITYHQAALGMVQ 204
The following BLAST results are available for this feature:
BLAST of NO21G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22589.16.100e-1452.81hypothetical protein Naga_100155g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004710NSK004710Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00840.1NO21G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO21G00840.2NO21G00840.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|200300gene_8038Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100155g3gene7858Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00840.1NO21G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO21G00840.2NO21G00840.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00840 ID=NO21G00840|Name=NO21G00840|organism=Nannochloropsis oceanica|type=gene|length=2754bp
AGCGTCTCCTCCATTCCGTGACCTGTAGGGAAAGGGGAAATTCTGATGTA
TTTTAATGCCCCAAAATGCCGATCACGATTATATTTAATTCTCTTGTGTC
TTGTAGGAAACAGGAAGACAAAGAGATGAAAGGGGAGGAAAAATCACCGA
GGACTCCTTGGAGAACGCAGCTGAATTGAAATTTTCATCATTGCTTTGAC
CATTCACTTCTGTTGTGGGTATCACCCGATCAGTGCTTGTTTCCTCCTAC
ATAGAGTGGGCGCTTGCCCGGACATCGCAACATGCATGAAGACAGAGAAG
GGTTGTCGGCTTACCCAAACCACCCCTCCTTACCCACCACGCACCACAAT
CGTTCAGAAGGAAGGAGGCGGCCCTCCTCGCCCTGGCCCTGGCCGTCGTC
CTATCCCTTACCTGTCTAGGCAACATCTGCTGCACCAGCGAGCCCACCGC
CACCCATTGCGTTTCAGACGCGCTTGTTCACGGATAGCATTCATCACACT
CGCCCATGTCCCCGTTTCGAAGCGGGGAGAGTTTTACCTCGATCGCCTCC
ACGAGCCATAGCACGGCTTCAATACCTTCTACATACTCTCCGTCCTCTCC
ACCGGGGCGAGAGGTAACGATGGGGGAGACGGACGACAGAGAAAGCTTAT
TCAATGACACGCTAGAGGGAGGGGAGCGAAGAAGAGAAGGGGGAAGTGAG
AGAAGGGAAAGATGGGGAGAAGAGATGAAGGAGGAGGAGGGAGGAGGAGC
GACCAAAGGCTCGATGCGATTGAAAGAGCAGGAGGAAAGCAATGAGATGG
CTAGGTGGAGGACGATGTGCTGCCCACACTCTGCTGCTGCTGGTGTGGCT
AGCACTGCTGATGATCGACGCACCTGCCCGGGCCTGCGGACCGCAGGGTG
GGTGGTGGTCGTGTTGTCGCTTGGGGTTTTGGCGGTGCTGAGTGCGTACC
TGGGCTTGGTGGCTACGATCGCACgtaagttatggcatgactaaaggagt
agaggaatgggtgtgaatatgattgtgtatgtttcacaggcacattttcg
atctaactttacttaaatcttcctgcctctcacccttccaccctccctcc
ctccctccctctcacagCACCGCTCATCACCCTCAACCCAAGTGCTGTCC
AAAATCTCCTTATCGACGGGCCCTATCTTAACGCGGTGGTTTCGTTCGAC
GGCATTGTTGACAATAAAAGCAGGTTCAAAGTCCATATCGAAGATCCAGC
CGTACACGTGAGCTATCACGGAGCGGCTCTAGGCATGgtaagagggagga
aaggggggaagggaggtaaaggataaaaaagaaaaggaaggaaacgagaa
aagagagaggttggtaggagaaagagggggaaaaatctccctatggagga
aaaaaaaagaagactaacatttgcctttcttccccgtctttccccctccc
cccctccctccctccctccctccctccttgcagGCCCTAATCCCCCCTAT
ACGCCTTCCCCCTTCTGGCTCAGTCGCCGTCCATGCCAACGCCACGTTCT
ACCACGTGAACAGCATTCAGGCTGAGGGCGGCGGGGGGGGGAAGGGCGGG
ATGGGGCACACGGAGGGACGACTGTTTTAGGGCAGCAGCTGGTGGACGAA
GTGTTGGGTAAGCTCACTTCAAGGCTAGGCCTGAATGCAGACGTGAGGGT
CGATGCCTTCGTACTGGGGAGGCGGGTTCCGATCGCATTTCCGATTCTGA
TGAGACTGGAGTGTGAATTTGAGAATGACTGGGGAGCGGGCGGGAGGGGG
GCAGGGCGGGAGGGAGGGTGGGGAGATGTGTGTGGGACGCACCTGCATCC
TATTTGGAAGAAAGGGTAGGGGAAGGAGCAGGAAAAAGAGGAAGGGAGAA
AGTGAGAGGAAGAGGGATGCTTCAAAGCGATTTTATGACCCGTTGCCCTA
TTGATTTATCCCTGTGGATGATCCGTTCATATTTAAATGCTCGTTGTTAG
GGAAAGTGGGGTGGCTAGGGTTCTTGAAAACCTGCGAAAGGTCTCTTACT
TCTCAGTGAAGGAATTAACATAGTAATAAAGGCTCTGAAGCATGTCTGTC
AATATCTGGACGTAGAAGGAGAAAGCATAAATGTAGCAGCAGCGACTACA
GAGACCAAAGTATCAACACCCACCAAAAGCAAAATTGGTCGTACAGTATA
ATCGAAAACAGCAACACACCCTATAAATCACGCTATGATCATGCAGTATT
AGAAGAATACGCAACATCAAAAACTGTTGCAGCAGCAAAAGCAGGAACAG
GGGAAGGAAGAGGAGGAGCAAAACCAGCTTCTTGTATAGTCTATCTTACT
CATGGAAAAAAAAGTAGAAGAAAAAGGAAAAAAAGGAAGAAATGGAATGA
AAAAGATGAAGAGTCTTCCCCTTATTTAGATTCGTTTTTGTGCGCGGGAA
AAAGTCTTCACGCTCTTTCTGTTCCTTTTTGCGTCTCTGACCTTATTCTT
TTTCACATAGCTTTACATGCCCACCCACTCATCCAGTAAGTCTTGCACGT
GCGTTTGCTTTTCCGTCTCCTCATCTCCTCACCCCAAATGGAGCGAGGTA
GGTAGGTAGATAGATGGAGGGATAGAGAGGGGTAGAAAGATAGAAAAAGG
TAGATAGATTGATAGGTAGATAGATATGTAGATAAATAGAGAAATAGAGA
AAGCGAACAAGGAAAGAGGAATGTACACCATCCCGTGGAATATTTAAAGA
GCGT
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protein sequence of NO21G00840.1

>NO21G00840.1-protein ID=NO21G00840.1-protein|Name=NO21G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MSPFRSGESFTSIASTSHSTASIPSTYSPSSPPGREVTMGETDDRESLFN
DTLEGGERRREGGSERRERWGEEMKEEEGGGATKGSMRLKEQEESNEMAR
WRTMCCPHSAAAGVASTADDRRTCPGLRTAGWVVVVLSLGVLAVLSAYLG
LVATIAPPLITLNPSAVQNLLIDGPYLNAVVSFDGIVDNKSRFKVHIEDP
AVHVSYHGAALGMVRGRKGGKGGKG*
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protein sequence of NO21G00840.2

>NO21G00840.2-protein ID=NO21G00840.2-protein|Name=NO21G00840.2|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MSPFRSGESFTSIASTSHSTASIPSTYSPSSPPGREVTMGETDDRESLFN
DTLEGGERRREGGSERRERWGEEMKEEEGGGATKGSMRLKEQEESNEMAR
WRTMCCPHSAAAGVASTADDRRTCPGLRTAGWVVVVLSLGVLAVLSAYLG
LVATIAPPLITLNPSAVQNLLIDGPYLNAVVSFDGIVDNKSRFKVHIEDP
AVHVSYHGAALGMALIPPIRLPPSGSVAVHANATFYHVNSIQAEGGGGGK
GGMGHTEGRLF*
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Synonyms
Publications