NO21G00640, NO21G00640 (gene) Nannochloropsis oceanica

Overview
NameNO21G00640
Unique NameNO21G00640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3407
Alignment locationchr21:218921..222327 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:218921..222327 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G00640 vs. NCBI_GenBank
Match: EWM22559.1 (hypothetical protein Naga_101264g2 [Nannochloropsis gaditana])

HSP 1 Score: 119.4 bits (298), Expect = 5.500e-23
Identity = 56/73 (76.71%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:  186 RARRAILRGLDYLYKLAQKRANFVSFGADIIMTLMDVASQSADEGVRRAALQRAELLGHIWYQAFPTLKEIAR 259
            R +RAIL+GLDYLYKLA KRANFVSFGAD+IMTLMDVASQ+AD+ VR++ALQRAE+LGH+W+++FP+L+EIAR
Sbjct:  247 RRQRAILKGLDYLYKLAIKRANFVSFGADVIMTLMDVASQAADDRVRKSALQRAEVLGHLWFESFPSLEEIAR 319
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BLAST of NO21G00640 vs. NCBI_GenBank
Match: XP_009034610.1 (expressed protein [Aureococcus anophagefferens] >EGB11056.1 expressed protein [Aureococcus anophagefferens])

HSP 1 Score: 82.0 bits (201), Expect = 9.800e-12
Identity = 53/182 (29.12%), Postives = 76/182 (41.76%), Query Frame = 0 
Query:  417 ALAEAVDVSFYAGKVGMDLGATAQEIVPLLKNCRPYESCEEMGWDDWEDQLVMVTNTIHACSSFGELRLQPALFPHEFSLLKNKSTLRWTIKNKD-----------------------------------------GSWPVRDETLGAYDLFLSTSSAVGGLLDIRPQGWGPASAALADILR 558
            A   AV  +  A +  + +GA   E+   L   RPY   E MGW+DW DQL +    +   S+   LRL P+L P E++L+ + +TLR  +K +D                                         GSWP RD    +Y  + +   AV  L     +G+GPAS AL  +LR
Sbjct:   48 AATNAVLCASLAERAEVPVGADEAEVWAWLDPLRPYAPYEAMGWEDWLDQLTLAVTLVAVASNDCALRLPPSLLPAEYALVADPATLRRCVKKRDVHLVGDVATCLRVFGAADDDARVVVARDFLVKAQIRGGVEAGSWPTRDGDATSYAAYHAARCAVRALYAPTFRGFGPASPALRGVLR 229
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BLAST of NO21G00640 vs. NCBI_GenBank
Match: XP_009042414.1 (hypothetical protein AURANDRAFT_68471 [Aureococcus anophagefferens] >EGB02888.1 hypothetical protein AURANDRAFT_68471 [Aureococcus anophagefferens])

HSP 1 Score: 68.9 bits (167), Expect = 8.600e-8
Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 0 
Query:  417 ALAEAVDVSFYAGKVGMDLGATAQEIVPLLKNCRPYESCEEMGWDDWEDQLVMVTNTIHACSSFGELRLQPALFPHEFSLLKNKSTLRWTIKNKD 512
            A   AV  +  A +  + +GA   E+   L   RPY   E MGW+DW DQL +    +   S+   LRL P+L P E++L+ + +TLR  +K +D
Sbjct:  311 AATNAVLCASLAERAEVPVGADEAEVWAWLDPLRPYAPYEAMGWEDWLDQLTLAVTLVAVASNDCALRLPPSLLPAEYALVADPATLRRCVKKRD 405
The following BLAST results are available for this feature:
BLAST of NO21G00640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22559.15.500e-2376.71hypothetical protein Naga_101264g2 [Nannochloropsi... [more]
XP_009034610.19.800e-1229.12expressed protein [Aureococcus anophagefferens] >E... [more]
XP_009042414.18.600e-835.79hypothetical protein AURANDRAFT_68471 [Aureococcus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00640.1NO21G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658907gene_9470Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101264g2gene7880Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00640.1NO21G00640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00640 ID=NO21G00640|Name=NO21G00640|organism=Nannochloropsis oceanica|type=gene|length=3407bp
ATGGACGTCGCAGGAGGGGGAGTTGAAAAAGAGGAGGGGGAGACTCAGGC
ACCCCTTCTCACTAGTAGCACGAACATCCCAACGACTGTAGCGGAAGGAG
AGCCCCCCCAAAAAAAGAAGAAGCGGCTCATCGTGGAGGGGGAGGAGGAG
GGGGATGACGTCGGAAGAGGAGCACCAGCAGCAACAGCAACATCAGCAGG
CACCACTAATGGGGACTCTAACAGCAAGGAGGAGATGCTGGATTCCATCA
CCAAGCATGCGGCCGCTCCCTCGCACCCTCCATTCCCTGACCCCGGCGGT
CCGCACCAGCCCAAACGGAAGCGACTGCGCAGGCCCAGCGCGAGCAACGA
GGGGCCTCGGCGGGGGATAGCAGGATCAGGCAACACGGCAAAGACATCTC
CTATTTCCAATGCAGAGCTCGACCGCCTTCGTCGTCTCCAGCGAAGCGTG
AATCAAGAAATCCAAAAACGTCAACAGGAGACCCCGCCCTCCCTCCCAGC
CTCCTCCTCCTCCTCCTCCTCTCCTCCTCCCTCTCCTGCACATGAAGGGG
AGATGCGTGCCCGCCGAGCAATTCTAAGGGGATTGGACTATTTGTACAAG
CTGGCTCAAAAACGAGCTAATTTTGTTAGTTTTGGGGCAGATATCATCAT
GACCCTGATGGACGTGGCTTCTCAGAGTGCCGACGAAGGCGTCAGACGCG
CGGCTTTGCAGgtaagcaccaatctacacacaatcataccctcccttcct
tccctgctgaggacgcacgaggcatttgagagtggggggttgggaaatgg
gcgtgatagaggcgtcgccgagtgagtgtgccgttggaggatttttagag
ggaaggttgagggtggaagggtggaaggaagcgagggagggacctgcata
cagtggcgcacacatcattcgaatttgtggcagccatcaatcctctttct
ttgtccttctccctctttccccccctctccatcattctgctccctttcaa
cccctcctctctccccccttccctcttcatctctctcccgccctctctct
ctctctccctcttccccctcctctacagCGAGCAGAGCTGCTGGGTCATA
TATGGTACCAAGCCTTTCCCACCTTGAAAGAAATCGCCCGGAAAAAGGCC
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGTAGTTCGAGCAC
GTCGGTTGAGGAAGGAGGGGAGGGAGAAATGCTGGGTGGGAAGAAGGGAA
AGCACAAGAGGAAGAGGAGGAGGGAGAGGAAGAGCTCGGACATGTCTTTG
CTCTTGTCCGATGATGAAAAGGAGGATGAAGGCGAGAGGGAGGACGAGGA
CGAGGACGAGGACGAGGAAGAAGGAGAAGGGATGCTTAAGTCAGTGCAAC
CTGACCCTGATAAAGACGATGTCAACACTGCCATTCGTGGCCTTATCGTC
CTCTCTCGCTTAGGACTCCCTTCCTCCACCCTGGCAGCCGGTGTGCGTGC
CTACCTGTTAAACGGTCCGTTAAAAGCCAAGGATTTCTTCCGTTTCCACC
CACGGCCGAGGGGGGAGGGATGGGCTTCCTCGCGAATCTCCTTACCCAAG
ATGAGGCCGGCGTTTGCCTTGGCAGAAGCAGTGGATGTGTCGTTCTACGC
AGGGAAGGTGGGGATGGATTTAGGGGCGACAGCACAGGAAATTGTGCCTC
TGTTGAAGgtgagataactgcagtcttcccctctttctctctttccgtcc
ctctctcccccctctctcttttcttcttcctgtagttgtgctgcctaagc
cttaccaccatcatggctggtgaccccggttgtagtgacttaccctccct
ccctccctccctccctccctcctccctttcccccgaagAACTGCCGGCCC
TACGAGAGCTGCGAAGAGATGGGGTGGGACGATTGGGAGGACCAGCTCGT
CATGGTCACCAACACCATTCACGCCTGCTCGTCCTTTGGCGAGCTCCGTC
TCCAACCTGCCCTGTTTCCTCATGAATTCTCCCTGCTTAAAAACAAGTCC
ACGTTACGATGGACGATAAAGgtaggggatgcgcacctcgtcggcgacat
ttgtcattgtctggggattttcggggtgacccccccccccccccgccctc
ctcctcctcgccctcctcctcgctgccgatcgaactgctgctgaaagaag
ggcgcgatttcctcttggggctgcagAACAAGGATGGAAGCTGGCCAGTG
AGGGACGAGACCCTTGGGGCCTACGACCTCTTCCTCTCCACGTCCTCTGC
TGTCGGGGGATTGTTAGATATTCGGCCGCAGGGGTGGGGTCCGGCGTCGG
CGGCCCTGGCTGATATCCTGAGGAGAGTTAACACGGCGGAGGAGGAGGAG
GAGGGGAAGGAGAAGGGAAAGAAGAAGAAGATGGCCCCGCCGTCGGTTAC
GTGTTGTGGGCACAAACGTCCGTTGGTTTTGAAAAAATTTGAACGGCTGG
CCCTTTACTATACCAAGGCCGCGGGGGAGGAGAAGCAGGAGGTGGTGACC
CTTCCAACCTCCCGCCCTCCTCCAGGTAGGAAAGGGGAGGAGGGAGGGAG
GGAGGAGAAGATGAAGGTGGGGGGGGTGAAGGTTGCCCTGTTGCTGGACT
CCTCCCTCATGGGCGTGGCAGGGCAGGAGCTGGACCAACTGCTGCACCTG
TACCATCACTACCACCAGCAGCAGCAGCAGCAGCAGCGGTCGCAGCAGAG
AGGTAAGGCTGGATTGCCTTCGTTGGTGGGGGCGGGGGACGGGGAGAGGG
AGGGAGAGAGAGAGGGAGGGAGAGAGGGACGGCAGGAGAAGGCAGCGATC
GTGAGGAGGGCCACGATGGCCGCGAGAGGGCTGGATTCCTCGGGATTTCA
ACGGGAGTATGTGTCATACATGGGTAAAGAGGGAGGGAGGGGGGGAGGGG
GCAATAGCAGCACTAGCACTAAAATTTCGTTCGCGGCAGgtggagtgatg
ctcgatttgtatgagttgtttcaggccgtagttggagggaaggggggatg
gagggggtgggagggatggagggatggcatatggtggcgaaacacatagG
GATTCCTGCGTCGGTTTTGGACAGGGCGAGGAGAGTCAAGGATGTGTATG
ACCAGAGATTGAGTGGGTTTGAAGGGTGGTGGATGGAGGAGTGGGAGGCG
CGGGGGAAGAGGAAGGAAGTGGGGAGAATGGTGAGAGAGGAGGGGATGGG
AATGGAAGGAGGGGGAGCTGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAG
GAGGAGAAGGGGGGGTAGAGGGGAGGGAGGAGGCTGAGATGGGCCAGGTC
GAGCACATAGGGCGAGAGATGGAGGTGGAGGTGGAGGAAGGAGGGCTGGT
GGGTTGA
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protein sequence of NO21G00640.1

>NO21G00640.1-protein ID=NO21G00640.1-protein|Name=NO21G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=865bp
MDVAGGGVEKEEGETQAPLLTSSTNIPTTVAEGEPPQKKKKRLIVEGEEE
GDDVGRGAPAATATSAGTTNGDSNSKEEMLDSITKHAAAPSHPPFPDPGG
PHQPKRKRLRRPSASNEGPRRGIAGSGNTAKTSPISNAELDRLRRLQRSV
NQEIQKRQQETPPSLPASSSSSSSPPPSPAHEGEMRARRAILRGLDYLYK
LAQKRANFVSFGADIIMTLMDVASQSADEGVRRAALQRAELLGHIWYQAF
PTLKEIARKKAEEEEEEEEEEEEGSSSTSVEEGGEGEMLGGKKGKHKRKR
RRERKSSDMSLLLSDDEKEDEGEREDEDEDEDEEEGEGMLKSVQPDPDKD
DVNTAIRGLIVLSRLGLPSSTLAAGVRAYLLNGPLKAKDFFRFHPRPRGE
GWASSRISLPKMRPAFALAEAVDVSFYAGKVGMDLGATAQEIVPLLKNCR
PYESCEEMGWDDWEDQLVMVTNTIHACSSFGELRLQPALFPHEFSLLKNK
STLRWTIKNKDGSWPVRDETLGAYDLFLSTSSAVGGLLDIRPQGWGPASA
ALADILRRVNTAEEEEEGKEKGKKKKMAPPSVTCCGHKRPLVLKKFERLA
LYYTKAAGEEKQEVVTLPTSRPPPGRKGEEGGREEKMKVGGVKVALLLDS
SLMGVAGQELDQLLHLYHHYHQQQQQQQRSQQRGKAGLPSLVGAGDGERE
GEREGGREGRQEKAAIVRRATMAARGLDSSGFQREYVSYMGKEGGRGGGG
NSSTSTKISFAAGIPASVLDRARRVKDVYDQRLSGFEGWWMEEWEARGKR
KEVGRMVREEGMGMEGGGAGGGGGGGGGGGGEGGVEGREEAEMGQVEHIG
REMEVEVEEGGLVG*
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Synonyms
Publications