NO21G00560, NO21G00560 (gene) Nannochloropsis oceanica

Overview
NameNO21G00560
Unique NameNO21G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3311
Alignment locationchr21:194777..198087 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:194777..198087 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0031011Ino80 complex
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006351transcription, DNA-templated
GO:0006338chromatin remodeling
Vocabulary: INTERPRO
TermDefinition
IPR031047Ino80
Homology
The following BLAST results are available for this feature:
BLAST of NO21G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00560.1NO21G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00560.1NO21G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00560 ID=NO21G00560|Name=NO21G00560|organism=Nannochloropsis oceanica|type=gene|length=3311bp
ACAGCACAAGCTGGCAATCTATCCCCATGCAAGACGCTGAGGAGGAGGGC
TCAGACGAGTGTATGGTTGTGCCCGGAGTGTATCGCCAAATTCAAAAGCA
GCAGCATCAGCAGCAGCGCATGCCCCCCGTGCCTCCTCTCCCCAGTTATG
TAGGTGATGAAGGGGAGATAAACGACAAAGGAAGATCAAGACAGCAGGAG
CCTTTGTTCAAGACGGCACAGCTCATTATCGAGGAATATGAAGACGAAGA
AGAGCGAGAGAACGACAAGGAACAGGAGGATGAAAGGCGCGGTCCCAATG
CCGGCGGCAATGATGGCAACGGCAAGGGCATCGGGGCAAAGGAGAAAGCA
GTTGCGGTAACAGGGGGTGGACATACCCTTTGTAACGCCAGAATCAGTAG
CAACAGCAGCAGCAGCAGCATGTGGAGACAGGAGCTGCAGGAGCAGCAGG
AGCAGCAGGAGCAGGAGCAGCAGCAGCAGCAGCAAGTTCCCACAAGAGGG
GGGATAGAGGCCTTAAAGTCATCGTCCTCATTGAAGCAGGACGAGCAGGT
GGTGGAGCATTTCAATAGTTTGTCGGCTTCTGCTGCTGACGCTTACCTAG
GGTTGTCTGGCAGCCATGGAGAGGAGGAAGGAGGAGCAAGGAGAAGGGAG
GAAGGAAAAGAGGGACGAAAAGTCGAAGGTGGAGAGGTGCGAGGCGTCGA
CGTGGCTGGTGAGTTCGGGATAGAGGAGGCGGGGGAAGAGGAGGAGGAGG
AGAAGGAAGAAGAGGAGGGGAAGGAGGAGGAGGAACAAATCAAGTTGGAA
ATGCATGGGACGGCCCGCACAGTCTCGGTGACCGAGGGAGTATCGTGCGA
GGCCGGAGCCTTAAAGGAGGCTGTCATTGCGCCAGCCATCCACCTCCAGG
AAGAGTTCGAGGATGAGGAAGGGAGGGAAGGCAACACTCCCTCCTCCTTC
TCTGACCCTCCTTTTCGACATCGACGACGACGGAGTCAACATATCTCTCT
TACCAGTCCTCCCTACAATCCATACGCCGCTGCTGTTCCTCCACCATTTC
CTACCTCCAGCGGCGCCTCTACTTTTCCTCCTCCTCCTCCTTCTTCTTCT
TCTGCTTCTTACATAAGCTTAAGCCAGCAGCAGCCCCCTCATCCTCGCCC
TCTCGCATCCCCCTCCCTCAACACGACAACAACGTCTGTGCCCATCCCAG
AGATGGAGCAGCTGACCCTCGCCCACACGCCGCAGCAGCAGCGGGAGCAG
CAGCATCGGTGTCAGTGTCAAGGCCAAGAGCACAGGGATCGAATGTGGAG
GGAGGACGATCTGGAACTGCAGAGCGAATCGCTATATGTGGGGATTGAAG
TGCCCGTTCCGTCCCTCCTCTACGACCCTGGTGCTTACAACCGACAACCT
GTATCACAGCTTGCCGCAGCAGCAGCGGCAGCAGCGGCAGCAGCGTCAAA
AGGGAGGTGGAGGTCAAGAAAAGACTGGAGCGGGCGAAGGGAGGAGGGAG
GGGAAGAGATGATGGGAGGGGAGGAAGAAGCTTATTTGATGTTACAGCTC
AAGCAGGAGCAGCAGGAGTTACAGAGGCAGCAGCAGCACCAGCAACAGCA
CCAACAGGGAGGGAGGGAGGGGTGGTTATGCCACCAACATCAAGCAGGAG
CAGTTTTAAATCCTTTAAATCCTTCTTTTCTTCTTTACCCCCAATCCGCA
GCTTCTCCTGCTTTTGCTGCTGTTGCTGCTGCTCCTGCTGCTGGCACTGC
TGAGCATGGTCCGTCAAACGCCTTCCTTTTTCCTTCCTACCCCCCTCGGC
CACAACAAACGCCACCCATCTCCCACGCAACATCAACAGCAGCAATAAAA
ATAGGAAGGCCCCTCAACTTTTGCGTCCTTCCCCCCTCCCCCTCCTACTC
CGTCTTGCACTCCCCCTCCTACTCCCTCTTGCCCTCCCCCCCGCCCTCCC
CCCGTTTGGAAAATCTGCGAAGGGAGCTGGAGGCTCTGAAAGAAGATAAT
GCTCGACATCGTCACCACTATGAAAACCAGCTTGCCCGGCTTCTGGAAAC
CCAACAGCAGCAGCAGCGGGAGCAACAGCAGCAGCAGCAGCATCAGCAGC
AGCAACATCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAG
CGGGAGCAACATCAGCAGCAGCAGGCGTGGGGACAAGAGCGGGAGAAGGA
GAAGGAAAGGGAGAGGGAATGGCAGCAGAAGCAGCAGCAGCACCAGGAGC
TTCCATCTTTTCCCCTCCCTCCCCATCACCTCTCTCCTCCACAAGCAGAA
GGAGGGCCCGCGGTCCGACGGAAGGGAACTGCACTCCTCGCTGCTCGTGA
TGCACACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAAC
AACAACAACAACAACAACGACAACAACAGCTACAACAACAACAACAACAA
CAACAGCCACAACAACAACAACAACAACAACAACAACAACAACAACAAAC
AACAACAACAACAACAACAACAACAACAACAAACAACAACAACAACAACA
ACAACAACAAACAACAACAACAACAACAACAAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACACAACAACAACAACAACAACA
ACAAACAACAACAACAACAACAACAACAACAACAACAACAACAAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAGGCACTCCCCGAGCGCTTGCATGTGgtcgaagcggcgaat
ctagctcaaacagaagagaatcggagactacgacaggaacgagaagattt
agtccgttgtctggaagagcagCAGCAGCAGAAGCAGCAGCAGCAGCTAC
GGCAACAGCAGCACCAGCACCACCAGCACCACCAGCAGCACCACCAGCAG
CACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAGCAACAAGAGGG
ACAAGGGATAG
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protein sequence of NO21G00560.1

>NO21G00560.1-protein ID=NO21G00560.1-protein|Name=NO21G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1066bp
MQDAEEEGSDECMVVPGVYRQIQKQQHQQQRMPPVPPLPSYVGDEGEIND
KGRSRQQEPLFKTAQLIIEEYEDEEERENDKEQEDERRGPNAGGNDGNGK
GIGAKEKAVAVTGGGHTLCNARISSNSSSSSMWRQELQEQQEQQEQEQQQ
QQQVPTRGGIEALKSSSSLKQDEQVVEHFNSLSASAADAYLGLSGSHGEE
EGGARRREEGKEGRKVEGGEVRGVDVAGEFGIEEAGEEEEEEKEEEEGKE
EEEQIKLEMHGTARTVSVTEGVSCEAGALKEAVIAPAIHLQEEFEDEEGR
EGNTPSSFSDPPFRHRRRRSQHISLTSPPYNPYAAAVPPPFPTSSGASTF
PPPPPSSSSASYISLSQQQPPHPRPLASPSLNTTTTSVPIPEMEQLTLAH
TPQQQREQQHRCQCQGQEHRDRMWREDDLELQSESLYVGIEVPVPSLLYD
PGAYNRQPVSQLAAAAAAAAAAASKGRWRSRKDWSGRREEGGEEMMGGEE
EAYLMLQLKQEQQELQRQQQHQQQHQQGGREGWLCHQHQAGAVLNPLNPS
FLLYPQSAASPAFAAVAAAPAAGTAEHGPSNAFLFPSYPPRPQQTPPISH
ATSTAAIKIGRPLNFCVLPPSPSYSVLHSPSYSLLPSPPPSPRLENLRRE
LEALKEDNARHRHHYENQLARLLETQQQQQREQQQQQQHQQQQHQQQQQQ
QQQQQQQQREQHQQQQAWGQEREKEKEREREWQQKQQQHQELPSFPLPPH
HLSPPQAEGGPAVRRKGTALLAARDAHHQQQQQQQQQQQQQQQQQQQRQQ
QLQQQQQQQQPQQQQQQQQQQQQQTTTTTTTTTTTNNNNNNNNNKQQQQQ
QQTTTTTTTTTTTTTTTNNNNNNNNNNNNNNKQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHNNNNNNNKQQQQQQQ
QQQQQQTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNRHSPSACMCSSRSSSSSYGNSSTSTTSTTSSTTSSTSTS
TSTSTSTSSNKRDKG*
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Synonyms
Publications