NO21G00450, NO21G00450 (gene) Nannochloropsis oceanica

Overview
NameNO21G00450
Unique NameNO21G00450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1718
Alignment locationchr21:161941..163658 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:161941..163658 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G00450 vs. NCBI_GenBank
Match: EWM22545.1 (hypothetical protein Naga_101045g1 [Nannochloropsis gaditana])

HSP 1 Score: 133.3 bits (334), Expect = 1.900e-27
Identity = 165/432 (38.19%), Postives = 189/432 (43.75%), Query Frame = 0 
Query:   22 PSTLRILVAAAPTLATAMELTAWKVVTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHTIGPRPPSEAEAC----RDSDTTEGM------FDLLMLLGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEIPGRLPPVDPDTWVGQAAMEGDVVSMVGLLENVVCRVVALPARGRSXXXXXXXXXXXXXXXXXXXXXXXXXEEGIALTPTALNVHDKCVKLLPGLFLGGYAF--AKXXXXXXXXXVEGGVVGRTLEVAGCLAEEGGEGGIEGGWGMVMMECLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETQGKTTVLETGNLSEGHLAVVTLRR-------KEGREGGWAVDKVEMEVLPSFRVG 435
            P TLR+LV A+PT  TAM LTAWKVV +A                                          T      S    C       D  +GM      FDLL+LLG                                              +E+PGRLP ++ +TWVGQAA+EGD++++V LLENVVCR   +P R              XXXXXX        EE   LT TALNVHD CVKL   L+LGGYA+    XXXXXXXXX       RTL  A  L EE GE G  G W M+MME LP                 XXXXXXXXXXXXXXXXXXXXXX                       VE  G TT++E G L++GH AVVTL R              W V KVE+E LPSFRVG
Sbjct:   16 PVTLRLLVVASPTFDTAMALTAWKVVQNASCERAKSRVHTWRSV--------------------------FTASGNASSRESRCGAGEEGMDLEDGMEVEDPKFDLLLLLG-TFAHMTRRKRGSLGPHTGRNEAGRINNEGGDGEDEEEGRWEEVEEEEVPGRLPALNTETWVGQAAVEGDMINVVALLENVVCRACVVPDR-------RDRAKGEXXXXXXTNRGRGGREEKEVLTSTALNVHDGCVKLSTDLYLGGYAYEGGXXXXXXXXXXXXXXXXXRTLRAAAHLVEEEGEEGRNGPWRMMMMEYLP---------------ETXXXXXXXXXXXXXXXXXXXXXXIPEDVSPRVLLRIRRREGVGKGNVEEAGGTTIVEPGALADGHFAVVTLGRGGRXXXXXXXXXXXWMVRKVELERLPSFRVG 398
The following BLAST results are available for this feature:
BLAST of NO21G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22545.11.900e-2738.19hypothetical protein Naga_101045g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00450.1NO21G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00450.1NO21G00450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00450 ID=NO21G00450|Name=NO21G00450|organism=Nannochloropsis oceanica|type=gene|length=1718bp
AGCAAGCGTACCTCCTCCCCAGGTCCGTATGTTAACAAAGCACACACAAA
AAAAAACACTGCCGCCGGACTTTTGGTCTTGTTTGTGCACTTGGCCTGGG
TCATACCACTCCATGATAGCCCCTATTGTTCCTATTGCTGCTGTCTTGTT
CGAAAAGACGAGTAAATGCGACAGCACTTCTCTTCGACGCCAACCCACCC
CGCCCCTCCCCTGTGTCGGCCGCTCTGCTTTCATTCCACTTTCGTAGATC
CATTTGTAGAGACGAACGCGGACAAGGTTGCCATACAGCTTTCGCTAAAA
AACCATACACACCCCCAACCCTAACGCAGGTAAATCCATGCCGCCACCCT
CCTTCTCCTCCTCCTCCTCCTCCTCCTCCTTCAGCACTGTTCCCCCACTG
CCGTCTACCCTTCGCATCCTCGTCGCGGCCGCCCCTACTCTCGCCACAGC
CATGGAATTGACAGCGTGGAAAGTGGTGACAAGTGCCTCGATCGGTGCCG
CAACCACCTCCACCAGCACCAGCACCAGCACCAGCAAGAGCAAGAGCAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGACCAGAATTGA
GGAGGAAGGTCACACAATCGGGCCACGACCACCGAGTGAAGCCGAGGCAT
GCAGGGATAGTGACACCACCGAGGGCATGTTTGACCTGTTGATGCTCTTG
GGACCATGTGCTGCTTCTACTGCTTCTACTGCTGCTACTGCGGCTACTTA
TAGCGAGCGACGCCTTACACCACCACCACCACCAGAAAAAGACGATGACG
AAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGGGGATGAAATC
CCAGGACGGCTCCCTCCAGTCGATCCGGACACATGGGTAGGGCAGGCGGC
GATGGAAGGTGATGTAGTCAGTATGGTGGGCTTGCTTGAGAACGTCGTCT
GCCGGGTTGTGGCTTTGCCCGCGAGGGGGAGGTCGAGGGGGAGGGAGGAA
AAGAGGGGACGAAACGAGGGAGGTGGAGAAGAGGGAAGGGGGGGCGGAAG
AGGGAGGGAGGAGGAAGGCATTGCGTTGACCCCGACAGCTTTGAATGTGC
ATGACAAGTGCGTGAAATTGTTGCCTGGTCTATTCCTGGGCGGATATGCC
TTTGCAAAGGAGGAGGAGGAGGAGGAGGAAAGGAGTGTGGAAGGGGGAGT
GGTGGGGCGGACGTTGGAAGTAGCAGGATGCTTAGCGGAGGAGGGGGGGG
AGGGGGGGATAGAAGGGGGTTGGGGGATGGTGATGATGGAATGTCTTCCT
CCGTTGTCTGCGAGTGCGACGGCGTCTTCTTCTCCTCCTCCCCTTCCTCC
TCCTCCTCCTCGTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCGT
CCTTTACGGACCATCTCATGCTTCGTGTGCGGCATCGGGAGGGCAAGAAG
AAGGGCGGCCGGGGGGGAGGAAGTGGGGGAGGAAGGGTAGAGACGCAAGG
CAAGACAACAGTGCTGGAGACGGGAAATCTCTCCGAAGGTCATCTGGCAG
TGGTGACGCTGCGACGAAAGGAAGGGAGAGAGGGAGGGTGGGCGGTAGAT
AAGGTAGAGATGGAGGTATTGCCATCATTTCGAGTAGGGCGAGAGAGAGG
AGAGGAAAAGCCTCCCCAAGAGTAAAAGAATAATAATAATCATAATAGAC
ATGAAAACATTAATCAAT
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protein sequence of NO21G00450.1

>NO21G00450.1-protein ID=NO21G00450.1-protein|Name=NO21G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MPPPSFSSSSSSSSFSTVPPLPSTLRILVAAAPTLATAMELTAWKVVTSA
SIGAATTSTSTSTSTSKSKSNSSSSSSSSSRRRRTRIEEEGHTIGPRPPS
EAEACRDSDTTEGMFDLLMLLGPCAASTASTAATAATYSERRLTPPPPPE
KDDDEREEEEEEEEEDEGDEIPGRLPPVDPDTWVGQAAMEGDVVSMVGLL
ENVVCRVVALPARGRSRGREEKRGRNEGGGEEGRGGGRGREEEGIALTPT
ALNVHDKCVKLLPGLFLGGYAFAKEEEEEEERSVEGGVVGRTLEVAGCLA
EEGGEGGIEGGWGMVMMECLPPLSASATASSSPPPLPPPPPRPPSSSSSS
SSSPSFTDHLMLRVRHREGKKKGGRGGGSGGGRVETQGKTTVLETGNLSE
GHLAVVTLRRKEGREGGWAVDKVEMEVLPSFRVGRERGEEKPPQE*
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Synonyms
Publications