NO21G00190, NO21G00190 (gene) Nannochloropsis oceanica

Overview
NameNO21G00190
Unique NameNO21G00190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length791
Alignment locationchr21:58571..59361 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:58571..59361 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO21G00190 vs. NCBI_GenBank
Match: XP_005854453.1 (hypothetical protein NGA_0210500 [Nannochloropsis gaditana CCMP526] >EKU21906.1 hypothetical protein NGA_0210500 [Nannochloropsis gaditana CCMP526] >EWM20675.1 hypothetical protein Naga_100420g5 [Nannochloropsis gaditana])

HSP 1 Score: 195.7 bits (496), Expect = 1.400e-46
Identity = 120/196 (61.22%), Postives = 139/196 (70.92%), Query Frame = 0
Query:    8 FIIALIATSSGAFIVPSFTS---FSSATLSSSSQSPFHSHRTISMAPSGVPPVAPSNFLFASPNDDSPPSSSNPLTPLLIRLGYKTDTAAEDPRTLREKLKDFGLAGVVSYIASEVLFWFISLPVGIFAFHQSTGEWLDLSTSEGQGKVAAFSAGFLTFARVALPLRAAVALALTPALDKYVVRPLVVRGLLNGTE 201
            F++ L  ++S    VPS TS    SS TL S    P  S    S + S    +      FA+P +DS P  SN +T LL+RLGY+ +    DPR+LRE+L+DFGLAGV SYIASEVLFWFISLPVGI AFHQSTGEWLDLSTS+GQ KVAAFSAGFLTFARVALPLRA VA AL PAL+KYV+RPLV RG+L   E
Sbjct:   26 FLLPLRFSTSSPSRVPSSTSSRPLSSLTLDS---LPLPSSTRCSTSISRRRHILFDFRTFATPREDSTP--SNAITSLLVRLGYQPEENDADPRSLRERLQDFGLAGVASYIASEVLFWFISLPVGIVAFHQSTGEWLDLSTSDGQAKVAAFSAGFLTFARVALPLRAGVAFALAPALNKYVIRPLVARGVLEDKE 216          
BLAST of NO21G00190 vs. NCBI_GenBank
Match: CBN75994.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 113.2 bits (282), Expect = 9.300e-22
Identity = 73/189 (38.62%), Postives = 104/189 (55.03%), Query Frame = 0
Query:   12 LIATSSGAFIVPSFTSFSSATLSSSSQSPFHSHRTISMAPSGVPPVAPSNFLFASPNDDSPPSSSNPLTPLLIRLGYKTDTAAEDPRTLREKLKDFGLAGVVSYIASEVLFWFISLPVGIFAFHQSTGEWLDLSTSEGQGKVAAFSAGFLTFARVALPLRAAVALALTPALDKYVVRPLVVRGLLNGTE 201
            L   S+   ++ S T+F         ++P  S   +  AP           + A   D+      N L   L+  G K+    E     +EK+K  GLAG ++Y  +E+ FW IS+P+ +  +HQ+TGEWLDL+T EG+ K+   +AGFLTFAR+ +PLR A+ALALTPA+DKY     VV+GLLN  E
Sbjct:    8 LFLASTALVLLNSSTAFVLPAARVGQRTPARSSPALCTAPGRATRSVTRVHMSAGSADE---EEMNSLDKALVAWGVKS-PPGEPEIDFKEKIKSAGLAGALAYGGTELAFWIISVPLAVVGYHQTTGEWLDLTTLEGKEKLFGLTAGFLTFARLVVPLRIALALALTPAMDKY-----VVKGLLNKNE 187          
BLAST of NO21G00190 vs. NCBI_GenBank
Match: CEM26925.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 89.4 bits (220), Expect = 1.400e-14
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 0
Query:   96 DPRTLREKLKDFGLAGVVSYIASEVLFWFISLPVGIFAFHQSTGEWLDLSTSEGQGKVAAFSAGFLTFARVALPLRAAVALALTPALDKYV 187
            D   L EK+K+ G+AGV+SY A+EV FW  SLP+ I AF  + G   D++  E   KVA +SAGFL+ AR  +PLR A ALALTP + KY+
Sbjct:   83 DREKLTEKIKEAGVAGVISYGATEVAFWLTSLPLAIAAFLATFGAIPDMANGEDAAKVAVYSAGFLSIARALVPLRIAAALALTPLVGKYI 173          
BLAST of NO21G00190 vs. NCBI_GenBank
Match: GAX09334.1 (hypothetical protein FisN_6Lh297 [Fistulifera solaris])

HSP 1 Score: 88.6 bits (218), Expect = 2.400e-14
Identity = 61/168 (36.31%), Postives = 95/168 (56.55%), Query Frame = 0
Query:   25 FTSFSSATLSSSSQSPFHSHRTISMAPSGVPPVAPSNFLFASPNDDSPPSSSNPLTPLLI-RLGYKTD----TAAEDPRTLREKLKDFGLAGVVSYIASEVLFWFISLPVGIFAFHQSTGEWLDLSTSEGQGKVAAFSAGFLTFARVALPLRAAVALALTPALDKYVV 188
            F   +S  L+SSS     + R +++  + +    PS  + +S N  S PS ++ L    I R   +T     T  ++P  + +++KD G AG++SY   E+ FWFIS+P  +FA+ Q+TG W DLS +E   K+ A +  F+ FAR A+PLR  +AL+ TP + K VV
Sbjct:   12 FAFVASMLLASSSA---FAPRPLTVTRTRIALADPSQTMESSNNSQSAPSVTSSLGGEYIQRTAIETTPPPLTEDKNPANMMQQIKDAGKAGIISYALWELGFWFISIPFCLFAYQQATGHWPDLSNAEDTAKLGAEAFAFVNFARFAVPLRIGLALSTTPWIQKNVV 176          
BLAST of NO21G00190 vs. NCBI_GenBank
Match: GAX22050.1 (hypothetical protein FisN_6Hh297 [Fistulifera solaris])

HSP 1 Score: 86.3 bits (212), Expect = 1.200e-13
Identity = 62/167 (37.13%), Postives = 95/167 (56.89%), Query Frame = 0
Query:   25 FTSFSSATLSSSSQSPFHSHRTISMAPSGVPPVAPSNFLFASPND-DSPPSSSNPL-TPLLIRLGYKTDTAAED--PRTLREKLKDFGLAGVVSYIASEVLFWFISLPVGIFAFHQSTGEWLDLSTSEGQGKVAAFSAGFLTFARVALPLRAAVALALTPALDKYVV 188
            F+  +S  L+SSS     + R + +  + +    PS  + +S N+  S PS ++ L    + R   +T   AED  P  + +++KD G AG++SY   E+ FWFIS+P  +FA+ Q+TG W DLS  E   K+ A +  F+ FAR A+PLR  +AL+ TP + K VV
Sbjct:   10 FSFVASMLLASSSA---FAPRPLMVTRTRLALADPSQTMESSNNNSQSAPSVTSSLGGEYMQRTAIETPPPAEDKNPANMMQQIKDAGKAGIISYALWELGFWFISIPFCLFAYQQATGHWPDLSNPEDTAKLGAEAFAFVNFARFAVPLRIGLALSTTPWIQKNVV 173          
BLAST of NO21G00190 vs. NCBI_GenBank
Match: KOO23834.1 (hypothetical protein Ctob_000765 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 80.1 bits (196), Expect = 8.700e-12
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = 0
Query:   89 KTDTAAEDPRTLREKLKDFGLAGVVSYIASEVLFWFISLPVGIFAFHQSTGEWLDLSTSEGQGKVAAFSAGFLTFARVALPLRAAVALALTPALDKYVV 188
            + +   ED +++ +K+KD G+AG++SYI  E  FW +S+PV +F F++ TG + D S SE   K+ A +  F+  AR A+PLR  +AL  TP + + +V
Sbjct:  229 EVEPVVEDSKSMMQKVKDAGVAGIISYIFWEWAFWGVSVPVSLFGFYEVTGHYPDFSNSEDLQKLGAEAFAFVNVARFAVPLRIGLALGTTPWVQENIV 327          
BLAST of NO21G00190 vs. NCBI_GenBank
Match: XP_002290122.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91874.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 79.3 bits (194), Expect = 1.500e-11
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 0
Query:   96 DPRTLREKLKDFGLAGVVSYIASEVLFWFISLPVGIFAFHQSTGEWLDLSTSEGQGKVAAFSAGFLTFARVALPLRAAVALALTPALDKYVVRPLVVRG 195
            + + L +K+K  G AG +SY   E+ FW +SLPV +  + Q TG W D S SE   KV A +  F+ FAR+A+PLR  +AL+ T  +D+ VV+  + +G
Sbjct:  395 ETQKLLQKVKQAGTAGAISYALWELAFWGVSLPVCVVGYKQLTGHWPDFSNSEDMQKVGAEAFAFVNFARLAVPLRIGLALSTTQWIDENVVQKFMKKG 493          
BLAST of NO21G00190 vs. NCBI_GenBank
Match: XP_005833747.1 (hypothetical protein GUITHDRAFT_70348 [Guillardia theta CCMP2712] >EKX46767.1 hypothetical protein GUITHDRAFT_70348 [Guillardia theta CCMP2712])

HSP 1 Score: 78.6 bits (192), Expect = 2.500e-11
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 0
Query:  103 KLKDFGLAGVVSYIASEVLFWFISLPVGIFAFHQSTGEWLDLSTSEGQGKVAAFSAGFLTFARVALPLRAAVALALTP 181
            K+KD G+AG+V+Y   E +FW IS+P  IFA+HQ+TGEW      E   KV+A   GFL  AR  +P+R A+ LA  P
Sbjct:    3 KVKDAGVAGLVAYAIWEFIFWAISVPTAIFAYHQTTGEWPSFDNPESTAKVSAVIFGFLNVARALVPVRIAITLATAP 80          
BLAST of NO21G00190 vs. NCBI_GenBank
Match: OEU20448.1 (hypothetical protein FRACYDRAFT_267638 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 78.6 bits (192), Expect = 2.500e-11
Identity = 39/91 (42.86%), Postives = 62/91 (68.13%), Query Frame = 0
Query:   96 DPRTLREKLKDFGLAGVVSYIASEVLFWFISLPVGIFAFHQSTGEWLDLSTSEGQGKVAAFSAGFLTFARVALPLRAAVALALTPALDKYV 187
            + + +  ++K+ GLAGV+SY   E+ FW IS+PV IF +++ TG + DL+ +E QGK+ A +  F+ FAR A+PLR  +AL  TP +D+ +
Sbjct:    3 ETQKMMAQVKEAGLAGVISYALWELGFWAISVPVCIFGYYEVTGHFPDLTNAEDQGKLGAEAFAFVNFARFAVPLRIGLALGTTPWIDENI 93          
BLAST of NO21G00190 vs. NCBI_GenBank
Match: XP_005765270.1 (hypothetical protein EMIHUDRAFT_104012 [Emiliania huxleyi CCMP1516] >XP_005769016.1 hypothetical protein EMIHUDRAFT_244908 [Emiliania huxleyi CCMP1516] >EOD12841.1 hypothetical protein EMIHUDRAFT_104012 [Emiliania huxleyi CCMP1516] >EOD16587.1 hypothetical protein EMIHUDRAFT_244908 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 77.0 bits (188), Expect = 7.400e-11
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 0
Query:   75 SSNPLTPLLIRLGYKTDTAAEDPRTLREKLKDFGLAGVVSYIASEVLFWFISLPVGIFAFHQSTGEWLDLSTSEGQGKVAAFSAGFLTFARVALPLRAAVALALTPALDKYVV 188
            SS    P++     K     E      +K+KD G+AG++SY+  E  FW +S+PV +  + + TG W DL+ SE Q K+ A +  F+  AR A+PLR  +AL  TP +   +V
Sbjct:   41 SSGAFAPVMRLKDGKDAGEGEGGGVTMQKIKDAGVAGIISYVFWEWAFWGVSVPVCVLGYREVTGHWPDLTNSEDQAKLGAEAFAFVNVARFAIPLRIGLALGTTPWVQANIV 153          
The following BLAST results are available for this feature:
BLAST of NO21G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854453.11.400e-4661.22hypothetical protein NGA_0210500 [Nannochloropsis ... [more]
CBN75994.19.300e-2238.62conserved unknown protein [Ectocarpus siliculosus][more]
CEM26925.11.400e-1451.65unnamed protein product [Vitrella brassicaformis C... [more]
GAX09334.12.400e-1436.31hypothetical protein FisN_6Lh297 [Fistulifera sola... [more]
GAX22050.11.200e-1337.13hypothetical protein FisN_6Hh297 [Fistulifera sola... [more]
KOO23834.18.700e-1239.39hypothetical protein Ctob_000765 [Chrysochromulina... [more]
XP_002290122.11.500e-1141.41predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_005833747.12.500e-1148.72hypothetical protein GUITHDRAFT_70348 [Guillardia ... [more]
OEU20448.12.500e-1142.86hypothetical protein FRACYDRAFT_267638 [Fragilario... [more]
XP_005765270.17.400e-1136.28hypothetical protein EMIHUDRAFT_104012 [Emiliania ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR093ncniR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR100ngnoR100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007555NSK007555Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00190.1NO21G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100420g5gene9732Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00190.1NO21G00190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00190 ID=NO21G00190|Name=NO21G00190|organism=Nannochloropsis oceanica|type=gene|length=791bp
ATGTGCCATCGAGTCGTCACTTTCATCATTGCCTTGATAGCCACCAGTAG
CGGTGCGTTCATTGTCCCCTCCTTCACATCGTTCTCCTCCGCCACCCTCT
CCTCCTCCTCCCAGTCCCCATTTCATTCCCACCGCACAATCAGCATGGCC
CCCAGCGGAGTACCCCCCGTTGCCCCCTCCAACTTCCTCTTTGCATCTCC
TAACGACGATTCTCCTCCGTCTTCCTCCAATCCCTTGACCCCTCTCCTCA
TCCGCCTGGGGTATAAAACGGACACCGCCGCGGAAGACCCGCGTACGCTT
CGTGAGAAACTGAAGGACTTTGGACTCGCGGGCGTCGTCTCCTATATTGC
GTCCGAGGTACTGTTTTGGTTCATTTCTCTGCCTGTAGGGATCTTTGCAT
TTCATCAGAGCACTGGAGAGTGGCTTGATCTGTCAACGAGTGAAGGGCAA
GGCAAGgtaggcatggagagggacaactgtcgacagcatttatgtaaatt
tctttttctatctcgtatttccccatcacattttctcttgcaaaaggcag
tccttcctccttctcccatcagttgctttgatctcgattctgtctcttcc
ctttcaacctttccatccttcctacccgcgctacccagGTAGCGGCTTTC
TCTGCCGGATTTCTCACCTTTGCACGCGTGGCATTGCCTTTGAGAGCTGC
GGTTGCCTTAGCCCTAACTCCCGCCCTTGACAAGTATGTTGTCCGACCAC
TGGTGGTGCGAGGATTGCTGAATGGGACGGAAGAGGAGTAG
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protein sequence of NO21G00190.1

>NO21G00190.1-protein ID=NO21G00190.1-protein|Name=NO21G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MCHRVVTFIIALIATSSGAFIVPSFTSFSSATLSSSSQSPFHSHRTISMA
PSGVPPVAPSNFLFASPNDDSPPSSSNPLTPLLIRLGYKTDTAAEDPRTL
REKLKDFGLAGVVSYIASEVLFWFISLPVGIFAFHQSTGEWLDLSTSEGQ
GKVAAFSAGFLTFARVALPLRAAVALALTPALDKYVVRPLVVRGLLNGTE
EE*
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Synonyms
Publications