NO20G02460, NO20G02460 (gene) Nannochloropsis oceanica

Overview
NameNO20G02460
Unique NameNO20G02460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1280
Alignment locationchr20:754974..756253 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:754974..756253 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026868Lyrm2
IPR008011Complex1_LYR
Homology
The following BLAST results are available for this feature:
BLAST of NO20G02460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02460.1NO20G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02460.1NO20G02460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02460 ID=NO20G02460|Name=NO20G02460|organism=Nannochloropsis oceanica|type=gene|length=1280bp
CGTCCCCCTGTTCTCGTTACCCTGCGTGTAGAGGCCCGTTGGGGTGTGGG
GGTGGGACATGAGACAGCCGGCGTTGCACCATGCTTCCTTCAGTCGCCTG
CCGTTGAAAGGTACTTGGAATTACCATATCATTTTCTACCACAAACATAG
GACAGGCATAAGATCAAAGCACCCTTTCACAGTTTCCGCTACACTGCTGC
CAATGCGGGCATGGGCATTACCCAGGAGGAGCTTCCGAAGATGTGAATTT
CCTGGGCTTCCTGCCGCTGCTCTGTGTCCAACCTCCTCCCTCTCCTCATG
CCCCGCACTGTCACCATCGCCACGACCGTCTATACTATCACTGCACGCTA
CTACGGGCACGCAAAGGAGAGCATGTCATCGTTCATTCTCCTCCTCCTCT
TCCTCCTTATATTTTCCTCCCCCCTCCTCTTACTCCTCCTTCCCAAGTCA
CCGCTCAAGCCCACTCAGAAGCATCATCAGCAGCACACGGTCCTTCTCCT
CCTCCTCCTCCTCCTCCTCCTCTGCCTCCTCCTCCTCTCCCACACCCACC
GGTAGTAGGGGAAGTCGTCTGGCGGCCAAAGGGGAAGCCAAGTCCCTCAA
GGCATTTATCCGACGTGCGCAGGTCCTGGCTCTGTACCGCTCCTTCTTGC
GGgtaggaagggaggaaaggagggagggaagaaaggagggagggaagaaa
ggagggagggaaggagggaaggaaggagagaagacggcatggggcccagc
ttgattttgttcgtaaagtcagtaatttcttttttctttttcctttccct
ttctttttttttagTGTGTCGGGTGTCTAGAGAGGCCTGACCTGCAGCTG
GACATCAAAACTCAGgtagaggaggagggagggcgggcgggagggaggaa
aggagggagggcggaaaactccaatcgcttgttaagagatgtagtaacac
cttcaaatttatgatttgacacttttttgttttcttttcttctagATCAT
GGATGGGTTCCGGCTGCACAGAGATACGGAGGAATATAACATCTCCTCCC
TCCTCGTCGAGGCCAACCGCCATTTGGAGCAGCTGAAGAGCATGGTGCCC
AAGGCGGGAAGGAGGGAGGGGGGAAGGCAGGGGGGACGAAGGGGGGGAAG
GAGAAGGAGGAGGAAAGGAAAGAGTATGTGGTGGGGGAGGGTTGGCCATG
GCAGAAATAGGAGGGAGGGAGGGAGGAAGCGAGGGAGGGCGGGAGGGAGA
GGGAGAGGGAGGATTTGTAGATATGGCTGA
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protein sequence of NO20G02460.1

>NO20G02460.1-protein ID=NO20G02460.1-protein|Name=NO20G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MRQPALHHASFSRLPLKGTWNYHIIFYHKHRTGIRSKHPFTVSATLLPMR
AWALPRRSFRRCEFPGLPAAALCPTSSLSSCPALSPSPRPSILSLHATTG
TQRRACHRSFSSSSSSLYFPPPSSYSSFPSHRSSPLRSIISSTRSFSSSS
SSSSSASSSSPTPTGSRGSRLAAKGEAKSLKAFIRRAQVLALYRSFLRCV
GCLERPDLQLDIKTQIMDGFRLHRDTEEYNISSLLVEANRHLEQLKSMVP
KAGRREGGRQGGRRGGRRRRRKGKSMWWGRVGHGRNRREGGRKRGRAGGR
GRGRICRYG*
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Synonyms
Publications