NO20G02340, NO20G02340 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G02340 vs. NCBI_GenBank
Match: EWM21996.1 (CS-like domain protein [Nannochloropsis gaditana]) HSP 1 Score: 241.1 bits (614), Expect = 3.800e-60 Identity = 145/250 (58.00%), Postives = 173/250 (69.20%), Query Frame = 0 Query: 1 MTARPIDYSKWDHLEASXXXXXXXXXXXXGLPRVTHFDEPMSVTLGGSQDGSTHPSASPSPPLSSSSTFPSSSTLKAHPRSTIEDVAENGQSLPAYAWRQDKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLANPISLEEEDEGLEWEVVGERGXXXXXXXXXXXXXVRLTFVKETPRADMVRWWSRVMEGEEEIDTQKIEGRSKKMNFQGAWEEAQKLFMEGVERRRKEGPV 251 M +RPIDYSKWDHL+ S G PRVTHF+EPMSVT+GG PS SP+P S SST P HP S IED++ENGQS P + WRQD+ EAI+H+W PP T AKDV V+Y +++ HL V+ + PVLVEG LANPI LEE +E +EWE+VGE XXXXXXXXXXXVR++ +K TPR DMV WWSRV G++EIDT +I GR KMNFQGAWEEAQ+ F E V RR +GPV Sbjct: 1 MRSRPIDYSKWDHLDTS---DDEDEEEKRGPPRVTHFNEPMSVTVGGHD--HLIPSRSPAP--SPSSTTP-------HPASRIEDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEE-VEWEMVGE---GXXXXXXXXXXXVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGR--KMNFQGAWEEAQRRFREDVARRNAQGPV 230
BLAST of NO20G02340 vs. NCBI_GenBank
Match: XP_001419905.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO98198.1 predicted protein [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 69.7 bits (169), Expect = 1.500e-8 Identity = 56/178 (31.46%), Postives = 74/178 (41.57%), Query Frame = 0 Query: 86 VAENGQSLPAYAWRQDKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLANPISLEEEDEGLE--------WEVVGERGXXXXXXXXXXXXXVRLTFVKETPRADMVRWWSRVMEGEEEIDTQKIEGRSKKMNFQG--AWEEAQKLFMEGVERRRKEGPVEVD 254 V + G Y WRQD EA + V V P T AKD V + V T V++ G A+ I E DE E WE+ G VR+T K+ + + WW ++G E D E R+ G AWEEAQ++F E V+ R K VE+D Sbjct: 133 VLDAGTKEERYYWRQDASEATLSVVVAPGTKAKDARVRVTATEVEISVLNRETGASEVVLRGEWAHEIDPEPRDEDDEYAPTTFGDWEITDFEG-------ADARRVVRVTVRKKASQM-LTHWWRSCIKGAPEEDPSTFEDRNSSRAEAGRRAWEEAQEMFRERVKTREK---VEID 299
BLAST of NO20G02340 vs. NCBI_GenBank
Match: CEM31509.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 69.3 bits (168), Expect = 2.000e-8 Identity = 89/297 (29.97%), Postives = 128/297 (43.10%), Query Frame = 0 Query: 3 ARPIDYSKWDHLEASXXXXXXXXXXXXGLPRVTHFDEPMSVT---------------------LGGSQDGSTHPSASPSPPLSSSSTFPSSSTLKAHPRSTI---------EDVAENGQSLPAYAWRQDKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLANPISLEEEDEGLEWEVV-------------GERGXXXXXXXXXXXXXVRLTFVKETPRADM--VRWWSRVMEGEEEIDTQKIEGRSKKMNFQGAWEEAQKLFMEGVERRRKEGPVEVDI 255 A+PIDYSKWDH++ S XXXXXXXXX VT FD P VT +P++ + R I D+ NG + Y W Q + V V VPP T A+DV ++ D++ HL V T +V+G L + + +E + WEV+ XXXXXXXXXX V+LT K A++ WWS + +G+ +IDT IE R + Q WEEA +F + + ++ +G + + + Sbjct: 2 AKPIDYSKWDHIDVS--DXXXXXXXXXXXXXVTRFDAPQKVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWPANEPMDIDTRPPIVCGTRRPGPADLTRNGGATDRYYWSQSRYGLTVSVMVPPDTGARDVRINLDEQ--HLTV----TCKGQTVVDGALEHRVKTDE--DSWTWEVIDFDDTXXXXXXXXXXXXXXXXXXXXXXRRLVQLTLQKSERAAELGFFVWWSCIFQGDPKIDTASIEDRKIDPDTQKRWEEAHSMFRQQLREKKAKGLLPMSV 288
BLAST of NO20G02340 vs. NCBI_GenBank
Match: XP_002504694.1 (predicted protein [Micromonas commoda] >ACO65952.1 predicted protein [Micromonas commoda]) HSP 1 Score: 64.7 bits (156), Expect = 4.800e-7 Identity = 52/167 (31.14%), Postives = 71/167 (42.51%), Query Frame = 0 Query: 96 YAWRQDKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLANPISLE-EEDEGL--------------EWEVVGERGXXXXXXXXXXXXXVRLTFVKETPRADMVRWWSRVMEGEEEIDTQKIEGR--SKKMNFQGAWEEAQKLFMEGVERRR 246 Y W Q+ E ++ V VPP T AKDV V ++ + + H LV+ +A+ I E +DE L EWEV VR+TF K+ A M WW R + +EIDT ++ R K Q WEEA F E V+ R+ Sbjct: 208 YMWSQEHDECVLSVVVPPGTKAKDVVVECTEDRVKVVLANHALQSATTLVDDDIAHRIDPEPRDDEELERSVDGFDVPRVYGEWEV-----CDWEPQSLGGRRVVRVTFRKKGLGA-MTHWWRRALRSGKEIDTAALKCRKEGKAAESQKIWEEATAAFKESVKNRK 368
BLAST of NO20G02340 vs. NCBI_GenBank
Match: OAE22472.1 (hypothetical protein AXG93_4697s1080 [Marchantia polymorpha subsp. ruderalis] >PTQ42317.1 hypothetical protein MARPO_0030s0062 [Marchantia polymorpha]) HSP 1 Score: 64.7 bits (156), Expect = 4.800e-7 Identity = 44/136 (32.35%), Postives = 65/136 (47.79%), Query Frame = 0 Query: 89 NGQSLPAYAWRQDKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLANPISLEEEDEGLEWEVVGERGXXXXXXXXXXXXXVRLTFVKETPRADMVRWWSRVMEGEEEIDTQKIEGRSKKM 225 NG Y+W Q E VH+ +PP T K VS + + +HLKV PP+L EG L NPI++++ W + E G T +++ + WW V++GE EIDTQK+E + K+ Sbjct: 184 NGADHEKYSWTQTLSEVTVHIPIPPGT--KSRAVSCEIKKKHLKVGL--KGQPPIL-EGDLYNPITVDDS----LWSI--EDGK---------------TLAVLLTKSNQMEWWKNVVKGEPEIDTQKVEPENSKL 293 The following BLAST results are available for this feature:
BLAST of NO20G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G02340 ID=NO20G02340|Name=NO20G02340|organism=Nannochloropsis oceanica|type=gene|length=798bpback to top protein sequence of NO20G02340.1 >NO20G02340.1-protein ID=NO20G02340.1-protein|Name=NO20G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bpback to top Synonyms
Publications
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