NO20G02340, NO20G02340 (gene) Nannochloropsis oceanica

Overview
NameNO20G02340
Unique NameNO20G02340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length798
Alignment locationchr20:706181..706978 -

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Properties
Property NameValue
DescriptionCS-like domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:706181..706978 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR037898NudC_fam
IPR007052CS_dom
Homology
BLAST of NO20G02340 vs. NCBI_GenBank
Match: EWM21996.1 (CS-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 241.1 bits (614), Expect = 3.800e-60
Identity = 145/250 (58.00%), Postives = 173/250 (69.20%), Query Frame = 0
Query:    1 MTARPIDYSKWDHLEASXXXXXXXXXXXXGLPRVTHFDEPMSVTLGGSQDGSTHPSASPSPPLSSSSTFPSSSTLKAHPRSTIEDVAENGQSLPAYAWRQDKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLANPISLEEEDEGLEWEVVGERGXXXXXXXXXXXXXVRLTFVKETPRADMVRWWSRVMEGEEEIDTQKIEGRSKKMNFQGAWEEAQKLFMEGVERRRKEGPV 251
            M +RPIDYSKWDHL+ S            G PRVTHF+EPMSVT+GG       PS SP+P  S SST P       HP S IED++ENGQS P + WRQD+ EAI+H+W PP T AKDV V+Y +++ HL V+    +  PVLVEG LANPI LEE +E +EWE+VGE    XXXXXXXXXXXVR++ +K TPR DMV WWSRV  G++EIDT +I GR  KMNFQGAWEEAQ+ F E V RR  +GPV
Sbjct:    1 MRSRPIDYSKWDHLDTS---DDEDEEEKRGPPRVTHFNEPMSVTVGGHD--HLIPSRSPAP--SPSSTTP-------HPASRIEDISENGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEE-VEWEMVGE---GXXXXXXXXXXXVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGR--KMNFQGAWEEAQRRFREDVARRNAQGPV 230          
BLAST of NO20G02340 vs. NCBI_GenBank
Match: XP_001419905.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO98198.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 69.7 bits (169), Expect = 1.500e-8
Identity = 56/178 (31.46%), Postives = 74/178 (41.57%), Query Frame = 0
Query:   86 VAENGQSLPAYAWRQDKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLANPISLEEEDEGLE--------WEVVGERGXXXXXXXXXXXXXVRLTFVKETPRADMVRWWSRVMEGEEEIDTQKIEGRSKKMNFQG--AWEEAQKLFMEGVERRRKEGPVEVD 254
            V + G     Y WRQD  EA + V V P T AKD  V        + V    T    V++ G  A+ I  E  DE  E        WE+    G             VR+T  K+  +  +  WW   ++G  E D    E R+      G  AWEEAQ++F E V+ R K   VE+D
Sbjct:  133 VLDAGTKEERYYWRQDASEATLSVVVAPGTKAKDARVRVTATEVEISVLNRETGASEVVLRGEWAHEIDPEPRDEDDEYAPTTFGDWEITDFEG-------ADARRVVRVTVRKKASQM-LTHWWRSCIKGAPEEDPSTFEDRNSSRAEAGRRAWEEAQEMFRERVKTREK---VEID 299          
BLAST of NO20G02340 vs. NCBI_GenBank
Match: CEM31509.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 69.3 bits (168), Expect = 2.000e-8
Identity = 89/297 (29.97%), Postives = 128/297 (43.10%), Query Frame = 0
Query:    3 ARPIDYSKWDHLEASXXXXXXXXXXXXGLPRVTHFDEPMSVT---------------------LGGSQDGSTHPSASPSPPLSSSSTFPSSSTLKAHPRSTI---------EDVAENGQSLPAYAWRQDKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLANPISLEEEDEGLEWEVV-------------GERGXXXXXXXXXXXXXVRLTFVKETPRADM--VRWWSRVMEGEEEIDTQKIEGRSKKMNFQGAWEEAQKLFMEGVERRRKEGPVEVDI 255
            A+PIDYSKWDH++ S   XXXXXXXXX    VT FD P  VT                                             +P++  +    R  I          D+  NG +   Y W Q +    V V VPP T A+DV ++ D++  HL V    T     +V+G L + +  +E  +   WEV+                 XXXXXXXXXX   V+LT  K    A++    WWS + +G+ +IDT  IE R    + Q  WEEA  +F + +  ++ +G + + +
Sbjct:    2 AKPIDYSKWDHIDVS--DXXXXXXXXXXXXXVTRFDAPQKVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWPANEPMDIDTRPPIVCGTRRPGPADLTRNGGATDRYYWSQSRYGLTVSVMVPPDTGARDVRINLDEQ--HLTV----TCKGQTVVDGALEHRVKTDE--DSWTWEVIDFDDTXXXXXXXXXXXXXXXXXXXXXXRRLVQLTLQKSERAAELGFFVWWSCIFQGDPKIDTASIEDRKIDPDTQKRWEEAHSMFRQQLREKKAKGLLPMSV 288          
BLAST of NO20G02340 vs. NCBI_GenBank
Match: XP_002504694.1 (predicted protein [Micromonas commoda] >ACO65952.1 predicted protein [Micromonas commoda])

HSP 1 Score: 64.7 bits (156), Expect = 4.800e-7
Identity = 52/167 (31.14%), Postives = 71/167 (42.51%), Query Frame = 0
Query:   96 YAWRQDKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLANPISLE-EEDEGL--------------EWEVVGERGXXXXXXXXXXXXXVRLTFVKETPRADMVRWWSRVMEGEEEIDTQKIEGR--SKKMNFQGAWEEAQKLFMEGVERRR 246
            Y W Q+  E ++ V VPP T AKDV V   ++   + +  H       LV+  +A+ I  E  +DE L              EWEV                  VR+TF K+   A M  WW R +   +EIDT  ++ R   K    Q  WEEA   F E V+ R+
Sbjct:  208 YMWSQEHDECVLSVVVPPGTKAKDVVVECTEDRVKVVLANHALQSATTLVDDDIAHRIDPEPRDDEELERSVDGFDVPRVYGEWEV-----CDWEPQSLGGRRVVRVTFRKKGLGA-MTHWWRRALRSGKEIDTAALKCRKEGKAAESQKIWEEATAAFKESVKNRK 368          
BLAST of NO20G02340 vs. NCBI_GenBank
Match: OAE22472.1 (hypothetical protein AXG93_4697s1080 [Marchantia polymorpha subsp. ruderalis] >PTQ42317.1 hypothetical protein MARPO_0030s0062 [Marchantia polymorpha])

HSP 1 Score: 64.7 bits (156), Expect = 4.800e-7
Identity = 44/136 (32.35%), Postives = 65/136 (47.79%), Query Frame = 0
Query:   89 NGQSLPAYAWRQDKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLANPISLEEEDEGLEWEVVGERGXXXXXXXXXXXXXVRLTFVKETPRADMVRWWSRVMEGEEEIDTQKIEGRSKKM 225
            NG     Y+W Q   E  VH+ +PP T  K   VS + + +HLKV       PP+L EG L NPI++++      W +  E G                T      +++ + WW  V++GE EIDTQK+E  + K+
Sbjct:  184 NGADHEKYSWTQTLSEVTVHIPIPPGT--KSRAVSCEIKKKHLKVGL--KGQPPIL-EGDLYNPITVDDS----LWSI--EDGK---------------TLAVLLTKSNQMEWWKNVVKGEPEIDTQKVEPENSKL 293          
The following BLAST results are available for this feature:
BLAST of NO20G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM21996.13.800e-6058.00CS-like domain protein [Nannochloropsis gaditana][more]
XP_001419905.11.500e-831.46predicted protein [Ostreococcus lucimarinus CCE990... [more]
CEM31509.12.000e-829.97unnamed protein product [Vitrella brassicaformis C... [more]
XP_002504694.14.800e-731.14predicted protein [Micromonas commoda] >ACO65952.1... [more]
OAE22472.14.800e-732.35hypothetical protein AXG93_4697s1080 [Marchantia p... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002790NSK002790Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02340.1NO20G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672025gene_6461Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101701g1gene8439Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02340.1NO20G02340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02340 ID=NO20G02340|Name=NO20G02340|organism=Nannochloropsis oceanica|type=gene|length=798bp
ACAGCATCAAGGGGTCAGAATTATGACGGCTCGCCCTATCGACTACAGCA
AATGGGATCACCTGGAGGCTTCGGACGACGACGAGGAAAACGACGAAGAG
GAGCGACGAGGCCTTCCCCGCGTGACGCATTTTGACGAGCCCATGTCCGT
CACCCTTGGTGGGAGTCAGGATGGCTCCACCCATCCCTCCGCCTCGCCCT
CCCCCCCTCTCTCCTCTTCCTCCACCTTTCCCTCCTCGTCCACGCTCAAA
GCCCACCCACGGAGTACTATCGAAGACGTGGCCGAGAACGGTCAATCCCT
CCCGGCATACGCCTGGCGACAAGACAAGCGAGAGGCAATAGTGCATGTGT
GGGTGCCCCCGAGTACCGTAGCCAAAGACGTCTGTGTCTCGTACGACAAG
GAAAGTCGGCACCTTAAGGTACAGGCTCATCCAACCTCCCTCCCTCCCGT
CCTCGTGGAAGGCACACTGGCCAATCCGATCTCCTTGGAAGAGGAGGACG
AAGGGCTCGAGTGGGAGGTGGTTGGGGAACGAGGAGGAGGGGAGGAGGGA
GGGAAGGAGGGAGGGAGGCGGGCAGTACGATTGACCTTTGTTAAAGAGAC
GCCGAGGGCAGATATGGTGCGTTGGTGGTCCAGGGTGATGGAGGGGGAAG
AGGAGATTGACACACAGAAGATAGAAGGGAGGAGTAAGAAGATGAATTTT
CAAGGGGCTTGGGAGGAGGCACAAAAGCTGTTTATGGAGGGGGTGGAGAG
ACGGAGGAAAGAGGGGCCGGTGGAAGTGGACATTGGGCAGCGGTAGCA
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protein sequence of NO20G02340.1

>NO20G02340.1-protein ID=NO20G02340.1-protein|Name=NO20G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MTARPIDYSKWDHLEASDDDEENDEEERRGLPRVTHFDEPMSVTLGGSQD
GSTHPSASPSPPLSSSSTFPSSSTLKAHPRSTIEDVAENGQSLPAYAWRQ
DKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLA
NPISLEEEDEGLEWEVVGERGGGEEGGKEGGRRAVRLTFVKETPRADMVR
WWSRVMEGEEEIDTQKIEGRSKKMNFQGAWEEAQKLFMEGVERRRKEGPV
EVDIGQR*
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Synonyms
Publications