NO20G02280, NO20G02280 (gene) Nannochloropsis oceanica

Overview
NameNO20G02280
Unique NameNO20G02280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr20:688125..688727 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:688125..688727 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0032008positive regulation of TOR signaling
GO:0032008positive regulation of TOR signaling
Vocabulary: Molecular Function
TermDefinition
GO:0005085guanyl-nucleotide exchange factor activity
GO:0032947protein-containing complex scaffold activity
GO:0005085guanyl-nucleotide exchange factor activity
Vocabulary: INTERPRO
TermDefinition
IPR037587LAMTOR2-like
Homology
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BLAST of NO20G02280 vs. NCBI_GenBank
Match: EWM20022.1 (hypothetical protein Naga_102277g1 [Nannochloropsis gaditana])

HSP 1 Score: 144.4 bits (363), Expect = 2.400e-31
Identity = 86/165 (52.12%), Postives = 98/165 (59.39%), Query Frame = 0 
Query:    1 MIRALALHEILAGRLGGNIRAAQVYNHDGALL----------------------------------AAITSHIWSTYEGVGHLTAEQPDEGXXXXXXXXXXXXXXVLETLILELEHARLVVVPAGPRYLVCLIGSEKAEVGMLMAKAQALGSFLREELGQVQVEG 132
            MIRAL LHEIL GRLG ++RAA VYNH+GALL                                  AAITSHIW TY GVG L +E    G               LET+ILE+E ARLVV PAGP+YLVCL+GSEKAEVGMLMAKAQALG++LR+  GQ+Q  G
Sbjct:    1 MIRALTLHEILTGRLGDSVRAALVYNHEGALLGAAAVPPAPPSPEENPTPPTGMPSRSTVLQAQATAAITSHIWDTYGGVGSLVSEPVAGG----RWEGGRERRRALETMILEMEGARLVVAPAGPQYLVCLVGSEKAEVGMLMAKAQALGAYLRDGFGQLQAAG 161
The following BLAST results are available for this feature:
BLAST of NO20G02280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20022.12.400e-3152.12hypothetical protein Naga_102277g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02280.1NO20G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595094gene_6455Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02280.1NO20G02280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02280 ID=NO20G02280|Name=NO20G02280|organism=Nannochloropsis oceanica|type=gene|length=603bp
ATGATCCGGGCGCTAGCGgtacgtcgctttctcctcctctccatttccta
tgattttgatcaccacaacagatacacatgccttatccacacctttttcc
tcctcttttatgccccagCTCCATGAAATTCTGGCGGGACGCCTAGGCGG
AAACATTAGGGCCGCCCAAGTCTACAACCACGACGGAGCCTTGCTCGgtg
ccgctgccctcccttcccccctccccctggtgcgcccctcccttcctctg
tcgatgcttgcggcccaccctcccgcgccgccgtgcttgaagcacaaact
acagCGGCCATTACCTCCCACATATGGAGCACATATGAAGGGGTCGGTCA
TTTGACCGCTGAGCAACCAGACGAAGGAGGAGGAAGGGGAGGAGGGCGAG
AGGGAAGGCGGGAAGGTAGGGTCCTCGAGACGCTGATCCTGGAGCTAGAG
CACGCCCGGTTGGTGGTAGTGCCCGCAGGGCCAAGGTATTTGGTGTGTTT
GATCGGTTCAGAAAAAGCGGAGGTAGGTATGTTGATGGCCAAGGCGCAGG
CATTGGGCTCTTTTTTGAGGGAGGAATTAGGTCAGGTCCAGGTGGAGGGG
TAA
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protein sequence of NO20G02280.1

>NO20G02280.1-protein ID=NO20G02280.1-protein|Name=NO20G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MIRALALHEILAGRLGGNIRAAQVYNHDGALLAAITSHIWSTYEGVGHLT
AEQPDEGGGRGGGREGRREGRVLETLILELEHARLVVVPAGPRYLVCLIG
SEKAEVGMLMAKAQALGSFLREELGQVQVEG*
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Synonyms
Publications