NO20G02270, NO20G02270 (gene) Nannochloropsis oceanica

Overview
NameNO20G02270
Unique NameNO20G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2174
Alignment locationchr20:685592..687765 +

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Properties
Property NameValue
DescriptionBeta-ig-h3 fasciclin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:685592..687765 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036378FAS1_dom_sf
IPR022796Chloroa_b-bind
IPR000782FAS1_domain
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0009579thylakoid
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Homology
BLAST of NO20G02270 vs. NCBI_GenBank
Match: EWM22009.1 (beta-ig-h3 fasciclin [Nannochloropsis gaditana])

HSP 1 Score: 375.6 bits (963), Expect = 2.000e-100
Identity = 197/336 (58.63%), Postives = 245/336 (72.92%), Query Frame = 0
Query:   57 QADLVTTLAADGRFTRLVPLLKTAGLDITLRSPGPWTLLAPTDAALDDIGTNLTLSMAAREPRRHLAPLLSYHIIPGKAMGLTELVAAGDTRSRIKTLERSGLSIAVYGGTILIDEARVTEWGNEASNGVIHVLDSLLLPCLPADFNPYESAEAAAEGPVLGVXXXXXXXXXXXXXXDEDKDTQTRFRKAEIKHARLAMLASVGVLGQEALLPGHPPALSALLKMGEEHSAATAAMTXXXXXXXPLLPIAVAFLPGVIYEVYFNLVKAGREERSVLGQKEEALTRILRQESPDFEEEREAKRQEVALGNKELNNGRLAMMAVVGMLAQELVTGRGI 393
            + DL++TLA DGRFTRL+ L K  GLD TL  PGPWT+LAPTDAALDD   NLTL +AAREP+RHL PLLSYHIIPGKAMGL +LVAAGD R+R+KTLERSGLSIAVYGGT+L+DE R+ EWG EA NGV+HV+DSLLLP LP+DF+P+ + EAA+ GPVLGV               +D  TQ R R AEIKHARLAMLA++G+L QE ++P HP A   +L    + S   A          P+  +A    PGV +EV+ +L +A +++      KEEALT+IL++ESPDFE ERE +R+++  GN+ELNNGRLAM+AVVGML QE+VTGR +
Sbjct:   93 ETDLLSTLAQDGRFTRLLHLFKEVGLDATLSGPGPWTVLAPTDAALDDQVANLTLIVAAREPKRHLTPLLSYHIIPGKAMGLGDLVAAGDARTRVKTLERSGLSIAVYGGTVLVDEGRILEWGMEAGNGVVHVMDSLLLPALPSDFDPFAAPEAASPGPVLGVTAPLGCWDPLGLWTGKDAATQARLRDAEIKHARLAMLAAIGILTQELVVPTHPYAFQPVLDALRD-STHMAPDVSFLLPLPPIAALAAILAPGVAWEVW-SLRRASKDKAPGRPSKEEALTQILKRESPDFEAEREEEREKIDAGNRELNNGRLAMIAVVGMLVQEIVTGRSV 426          
BLAST of NO20G02270 vs. NCBI_GenBank
Match: WP_089681895.1 (fasciclin domain-containing protein [Halomonas gudaonensis] >SDI68678.1 Uncaracterized surface protein containing fasciclin (FAS1) repeats [Halomonas gudaonensis])

HSP 1 Score: 100.9 bits (250), Expect = 9.300e-18
Identity = 55/140 (39.29%), Postives = 81/140 (57.86%), Query Frame = 0
Query:   57 QADLVTTLAADGRFTRLVPLLKTAGLDITLRSPGPWTLLAPTDAALDDIGTNLTLSMAAREPRRHLAPLLSYHIIPGKAMGLTELVAAGDTRSRIKTLERSGLSIAVYGGTILIDEARVTEWGNEASNGVIHVLDSLLLP 197
            Q D+V T  A G+F  LV  ++ AGL  TL+  GP+T+ APTDAA D +       +   + R  L  +L+YH++PG+ M    + A   T     T++   L I    G+++I++A V +   EASNGVIHV+DS+LLP
Sbjct:   32 QKDIVDTAVAAGQFETLVAAVEAAGLVDTLKGEGPFTVFAPTDAAFDALPEGTLDELLMTDNRDQLQAILTYHVVPGRIMAADAMEADSAT-----TVQGQDLRITTMNGSVMINDATVVDADIEASNGVIHVIDSVLLP 166          
BLAST of NO20G02270 vs. NCBI_GenBank
Match: WP_008673697.1 (fasciclin domain-containing protein [Rhodopirellula sallentina] >EMI58247.1 beta-Ig-H3/fasciclin [Rhodopirellula sallentina SM41])

HSP 1 Score: 99.4 bits (246), Expect = 2.700e-17
Identity = 59/154 (38.31%), Postives = 84/154 (54.55%), Query Frame = 0
Query:   58 ADLVTTLAADGRFTRLVPLLKTAGLDITLRSPGPWTLLAPTDAALDDIGTNLTLSMAAREPRRHLAPLLSYHIIPGKAMGLTELVAAGDTRSRIKTLERSGLSIAVYGGTILIDEARVTEWGNEASNGVIHVLDSLLLPCLPADFNPYESAEAA 212
            AD+V T    G F  LV   K AGL  TL+S GP T+ APTD A   +      ++   E +  LA +L+YH++PGK M    +  +G      KT++   + + V G  ++ID A V +   E  NGVIHV+DS++   LPAD +  E+A AA
Sbjct:   24 ADIVDTAVGAGSFQTLVAAAKAAGLVDTLKSDGPLTVFAPTDDAFAKLPDGTVETLLKPENKAKLAAILTYHVVPGKVMAADVVNVSG-----AKTVQGQQVDVKVDGSNVMIDNANVVKTDIECDNGVIHVIDSVI---LPADKSVVETAVAA 169          
BLAST of NO20G02270 vs. NCBI_GenBank
Match: WP_027316874.1 (fasciclin domain-containing protein [Microvirga flocculans])

HSP 1 Score: 99.4 bits (246), Expect = 2.700e-17
Identity = 60/158 (37.97%), Postives = 93/158 (58.86%), Query Frame = 0
Query:   41 GLFASSSSSPSTPPSPQADLVTTLAADGRFTRLVPLLKTAGLDITLRSPGPWTLLAPTDAALDDIGTNLTLSMAAREPRRHLAPLLSYHIIPGK--AMGLTELVAAGDTRSRIKTLERSGLSIAVYGGTILIDEARVTEWGNEASNGVIHVLDSLLLP 197
            G+ AS++S  +       D+V T AA G+F  L   LK AGL  TL+ PGP+T+ APTDAA   +      ++   E +  L  +L+YH++PG+  A  +T+L  A       KT+    L+++V G  ++I++A VT+    ASNGVIHV+D+++LP
Sbjct:   17 GIVASAASVRAA----DQDIVETAAAAGQFKTLASALKEAGLVSTLKGPGPFTVFAPTDAAFAKLPAGTVENLLKPENKDKLTAILTYHVVPGRVTAADVTKLKEA-------KTVNGKMLNVSVKGSGVMINDANVTQADITASNGVIHVVDTVILP 163          
BLAST of NO20G02270 vs. NCBI_GenBank
Match: WP_040185887.1 (fasciclin domain-containing protein [Halomonas salina])

HSP 1 Score: 99.0 bits (245), Expect = 3.600e-17
Identity = 52/138 (37.68%), Postives = 80/138 (57.97%), Query Frame = 0
Query:   59 DLVTTLAADGRFTRLVPLLKTAGLDITLRSPGPWTLLAPTDAALDDIGTNLTLSMAAREPRRHLAPLLSYHIIPGKAMGLTELVAAGDTRSRIKTLERSGLSIAVYGGTILIDEARVTEWGNEASNGVIHVLDSLLLP 197
            D+V T A  G+F  LV  +K A L  TL+  GP+T+ APTD A D +      S+   E +  L  +L+YH++PGK M    + A   T     T++   ++I    G+++I++A V +   EASNG+IHV+DS+L+P
Sbjct:   35 DIVDTAAGAGQFETLVAAVKAADLVETLKGEGPFTVFAPTDEAFDALPEGTVASLLEPENQEQLQSILTYHVVPGKIMAEDAMAADSAT-----TVQGQDITITTMDGSVMINDATVVQADIEASNGIIHVIDSVLMP 167          
BLAST of NO20G02270 vs. NCBI_GenBank
Match: WP_090018641.1 (fasciclin domain-containing protein [Limimonas halophila] >SDF50774.1 Uncaracterized surface protein containing fasciclin (FAS1) repeats [Limimonas halophila])

HSP 1 Score: 98.6 bits (244), Expect = 4.600e-17
Identity = 57/154 (37.01%), Postives = 87/154 (56.49%), Query Frame = 0
Query:   59 DLVTTLAADGRFTRLVPLLKTAGLDITLRSPGPWTLLAPTDAALDDIGTNLTLSMAAREPRRHLAPLLSYHIIPGKAMGLTELVAAGD---TRSRIKTLERSGLSIAVYGGTILIDEARVTEWGNEASNGVIHVLDSLLLPCLPADFNPYESAE 210
            DLV T A D RF+ LV  ++ AGL  TL+  GP+T+ APT+AA D+I  +   S+   E R  L  +L+YH++ G  M       +GD   T   + T++ + L +   G  + I++ARV +   EASNGVIH +D++++P       P + AE
Sbjct:   26 DLVDTAAGDTRFSTLVEAVQAAGLVETLKGEGPYTVFAPTNAAFDEIPEDRLNSLLKPENRDALRDVLTYHVVAGNVM-------SGDIAGTEQNVDTVQGTALRVDATGDGVRINDARVVQADIEASNGVIHAIDAVVMPRAQLGERPPKEAE 172          
BLAST of NO20G02270 vs. NCBI_GenBank
Match: WP_012373934.1 (fasciclin domain-containing protein [Opitutus terrae] >ACB74396.1 beta-Ig-H3/fasciclin [Opitutus terrae PB90-1])

HSP 1 Score: 98.6 bits (244), Expect = 4.600e-17
Identity = 62/167 (37.13%), Postives = 87/167 (52.10%), Query Frame = 0
Query:   31 VPA-CGGAVVHGLFASSSSSPSTPPSPQADLVTTLAADGRFTRLVPLLKTAGLDITLRSPGPWTLLAPTDAALDDIGTNLTLSMAAREPRRHLAPLLSYHIIPGKAMGLTELVAAGDTRSRIKTLERSGLSIAVYGGTILIDEARVTEWGNEASNGVIHVLDSLLLP 197
            VPA  GG  VHG                 D+V   ++ G F  LV  +K AGL  TL+ PGP+T+ APTD A   +       +   E ++ LA +L+YH++PGK M      AA     + KT+    L+I V GG + ++ A+V      ASNGVIHV+DS++LP
Sbjct:   20 VPAHAGGGAVHG---------------SKDIVAVASSAGNFNTLVAAVKAAGLVETLQGPGPFTVFAPTDEAFAKLPAGTLDELLKPENKKKLAGILTYHVVPGKVM------AADVKPMQAKTVNGQTLAINVAGGGVTVNGAKVVATDVAASNGVIHVIDSVVLP 165          
BLAST of NO20G02270 vs. NCBI_GenBank
Match: WP_104830028.1 (fasciclin domain-containing protein [Marinicaulis flavus] >PQA88791.1 hypothetical protein CW354_06895 [Marinicaulis flavus])

HSP 1 Score: 98.6 bits (244), Expect = 4.600e-17
Identity = 63/169 (37.28%), Postives = 94/169 (55.62%), Query Frame = 0
Query:   30 PVPACGGAVVHGLFASSSSSPSTPPSPQADLVTTLAADGRFTRLVPLLKTAGLDITLRSPGPWTLLAPTDAALDDIGTNLTLSMAAREPRRHLAPLLSYHIIPG--KAMGLTELVAAGDTRSRIKTLERSGLSIAVYGGTILIDEARVTEWGNEASNGVIHVLDSLLLP 197
            P+ A   A+  G  A+++         + D+V T    G+FT L   L  AGL  TL+  GP+T+ APTDAA + +      S+   E +  L  +L+YH++PG  KA  + +L +A        T+  + LSIAV  G ++I++A VT    +ASNGVIHV+DS+LLP
Sbjct:    6 PLIAAAAALAAGFGAANADHHG---KAKKDIVDTAVEAGQFTTLATALTEAGLVQTLKGEGPFTVFAPTDAAFEKLPEGTVESLLKPENKDQLTAILTYHVVPGKVKAADVVKLDSA-------DTVNGASLSIAVKDGAVMINDATVTAADVKASNGVIHVIDSVLLP 164          
BLAST of NO20G02270 vs. NCBI_GenBank
Match: WP_028640098.1 (fasciclin domain-containing protein [Novosphingobium acidiphilum])

HSP 1 Score: 97.8 bits (242), Expect = 7.900e-17
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 0
Query:   57 QADLVTTLAADGRFTRLVPLLKTAGLDITLRSPGPWTLLAPTDAALDDIGTNLTLSMAAREPRRHLAPLLSYHIIPGKAMGLTELVAAGDTRSRIKTLERSGLSIAVYGGTILIDEARVTEWGNEASNGVIHVLDSLLLPCLP 200
            + D+V T  A G+F  L   L  AGL  TL+ PGP+T+ APTDAA   +      ++   E +  L  +L+YH++PG     T + A     S  KT+  + + I V  GT++ID A+V      A+NGVIHV+D++L+P  P
Sbjct:   29 EKDIVDTAVAAGQFKTLTAALDAAGLVATLKGPGPFTVFAPTDAAFAKLPEGTVTTLLKPENKAALTAILTYHVVPG-----TVMAADVVKMSEAKTVNGAMVRITVNNGTVMIDNAKVVMTDIVATNGVIHVIDTVLMPPQP 166          
BLAST of NO20G02270 vs. NCBI_GenBank
Match: WP_045568893.1 (fasciclin domain-containing protein [Vibrio sp. S234-5] >KJR39617.1 fasciclin [Vibrio sp. S234-5])

HSP 1 Score: 97.4 bits (241), Expect = 1.000e-16
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 0
Query:   46 SSSSPSTPPSPQADLVTTLAADGRFTRLVPLLKTAGLDITLRSPGPWTLLAPTDAALDDIGTNLTLSMAAREPRRHLAPLLSYHIIPGKAMGLTELVAAGDTRSRIKTLERSGLSIAVYGGTILIDEARVTEWGNEASNGVIHVLDSLLLP 197
            SS+        + D+V    A+G FT LV  +K AGL  TL+  GP+T+ APTD A   +       +   E +  L  +L+YH++PGK M   +++  G    +  T++   + I VYGG +++D A V     +ASNGVIHV+D++++P
Sbjct:   20 SSAQAHNHGMKKTDIVDVAVANGSFTTLVAAVKAAGLVETLKGDGPFTVFAPTDEAFAKLPEGTVEMLLKPENKDKLVAILTYHVVPGKVMA-ADVIKLG----KATTVQGQDVMIKVYGGKVMVDNANVVATDVKASNGVIHVIDTVIMP 165          
The following BLAST results are available for this feature:
BLAST of NO20G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22009.12.000e-10058.63beta-ig-h3 fasciclin [Nannochloropsis gaditana][more]
WP_089681895.19.300e-1839.29fasciclin domain-containing protein [Halomonas gud... [more]
WP_008673697.12.700e-1738.31fasciclin domain-containing protein [Rhodopirellul... [more]
WP_027316874.12.700e-1737.97fasciclin domain-containing protein [Microvirga fl... [more]
WP_040185887.13.600e-1737.68fasciclin domain-containing protein [Halomonas sal... [more]
WP_090018641.14.600e-1737.01fasciclin domain-containing protein [Limimonas hal... [more]
WP_012373934.14.600e-1737.13fasciclin domain-containing protein [Opitutus terr... [more]
WP_104830028.14.600e-1737.28fasciclin domain-containing protein [Marinicaulis ... [more]
WP_028640098.17.900e-1737.76fasciclin domain-containing protein [Novosphingobi... [more]
WP_045568893.11.000e-1635.10fasciclin domain-containing protein [Vibrio sp. S2... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02270.1NO20G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|95144gene_6454Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02270.1NO20G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02270 ID=NO20G02270|Name=NO20G02270|organism=Nannochloropsis oceanica|type=gene|length=2174bp
GAGCATCGAAGCATGGCCCATTTCAGTCTTTCGATTCTCTGGTGACAACG
CAAGCAAGGCGCGTGAGCGCGTGCGTTGTACGAAAGTTGTGTCAGTCTCA
TGTGTCTGACCCTGTACACTCATTAAGTTGCACACGTGCAAACTTTTACA
GCAACACAGGTCAGTCGTAGGGGTGAGGAGGTTTTGGCTTGAGCCTTATA
GTCGAAACGCGTCGTCGTGCAAGACCACATCCCCTGCCCATGACCGTAAG
CCTCCTTGTCCTCGCTCTCACAATGACAACAAGCACCATGACCGCCGCCG
CGTTTCTTTTGCCCCTACCTACCTACCCCGTCCCTGCTTGTGGTGGTGCC
GTTGTCCACGGGCTCTTTGCTTCGTCCTCCTCCTCTCCCTCTACACCACC
ATCACCCCAAGCGGACCTCGTCACCACCCTGGCCGCAGACGGACGCTTCA
CTCGCCTCGTGCCCCTCCTCAAGACCGCGGGACTCGACATAACCCTCCGA
TCGCCCGGGCCCTGGACCTTGCTGGCTCCCACAGATGCGGCCTTGGACGA
CATTGGCACGAACCTCACCCTTTCCATGGCGGCGCGGGAGCCGCGGAGAC
ATCTGGCGCCGCTGTTGTCCTACCACATCATTCCAGgtaaggaaaagtag
tcgatttatggggggggagagagagagaaggagaaggagaatgagatgga
caaattatgggaacgagtgagagaagccgttcaggctaggctctgggtga
agcacacttgcatcatcctcaaggccacgtgtccgctcgccctccttctc
gccttcaagttaccaatccctcattcctgcataaaccaaagaacaagccc
ctttattccaaagtgcttatgaatgatttcctttttttccttctttcaaa
cagGCAAGGCCATGGGCCTGACGGAGCTAGTGGCCGCTGGTGACACCCGC
TCTAGAATCAAGgtgggttcagggaatgagggagggagggagggagggag
ggatgaaggaagggagaagagaaaaatgtaaatagcggcagaatagatgg
aaatgataaggcacacaatcgcaccctcaataacctccttaatccttttc
tttttcgcccccttccatcccctcccaaatcatcaccaaacggttgaatc
agACACTAGAACGCAGCGGCCTCTCCATTGCTGTCTACGGCGGAACCATT
CTGATCGATGAGGCCCGCGTCACCGAGTGGGGCAACGAAGCCAGCAACGG
CGTTATTCACGTTCTGGATAGCCTCCTCCTTCCCTGCCTCCCTGCGGATT
TCAATCCCTACGAGTCTGCCGAAGCCGCGGCTGAGGGTCCAGTGTTGGGC
GTTACGCCCCCCCTCGGTCTCTGGGACCCGTTGGGGTTATGGAAGGACGA
AGACAAAGACACGCAAACCCGGTTCCGAAAAGCTGAGATAAAGCATGCGC
GCTTGGCTATGCTGGCATCAGTGGGCGTGTTAGGGCAAGAGGCGTTGTTG
CCTGGTCATCCCCCCGCACTGAGCGCTCTCTTGAAAATGGGTGAAGAACA
TTCTGCTGCTACCGCTGCTATGACCTCAGCGACGAGCTCATTGTCGCCTC
TTTTACCGATAGCTGTTGCGTTTCTTCCCGGGGTTATCTATGAAGTGTAC
TTCAATCTTGTTAAGGCTGGGAGGGAGGAGAGGTCGGTATTGGGGCAGAA
AGAGGAAGCCCTCACGCGAATCCTTCGGCAAGAATCTCCCGACTTCGAGG
AGGAGCGGGAGGCAAAGCGTCAAGAGGTAGCATTGGGAAACAAAGAGTTA
AATAATGGGCGGTTGGCTATGATGGCGGTGGTGGGGATGCTAGCCCAGGA
GCTGGTGACGGGAAGGGGAATCTGGGACTGGGGGAGCTAGAAGGGCGAGT
CCGGCAGGTAGAAATATGTTTTTGATAAAAGTGGAGCCTGTATGATTGTG
GAGCAGATGAAACAAATGATAGCCTTTAGTTTTAGGAATGTTGTGATAGT
ACTTTTCACCGGCGTCCTAGTTGCAATTTTCTTAATAGCATCTGTACTTG
TGATACTTCTCGGAGCAGTAGCTCCTTCCTCCTTGGTGGAAACGTGTGGG
TCATAGCCTAGGCTATTATGGCCAAAATCGTAATATGCAACCCGCTGGCT
ACACCTTATCATTGTAGTGTGGTT
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protein sequence of NO20G02270.1

>NO20G02270.1-protein ID=NO20G02270.1-protein|Name=NO20G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MTVSLLVLALTMTTSTMTAAAFLLPLPTYPVPACGGAVVHGLFASSSSSP
STPPSPQADLVTTLAADGRFTRLVPLLKTAGLDITLRSPGPWTLLAPTDA
ALDDIGTNLTLSMAAREPRRHLAPLLSYHIIPGKAMGLTELVAAGDTRSR
IKTLERSGLSIAVYGGTILIDEARVTEWGNEASNGVIHVLDSLLLPCLPA
DFNPYESAEAAAEGPVLGVTPPLGLWDPLGLWKDEDKDTQTRFRKAEIKH
ARLAMLASVGVLGQEALLPGHPPALSALLKMGEEHSAATAAMTSATSSLS
PLLPIAVAFLPGVIYEVYFNLVKAGREERSVLGQKEEALTRILRQESPDF
EEEREAKRQEVALGNKELNNGRLAMMAVVGMLAQELVTGRGIWDWGS*
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Synonyms
Publications