NO20G02110, NO20G02110 (gene) Nannochloropsis oceanica

Overview
NameNO20G02110
Unique NameNO20G02110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length597
Alignment locationchr20:627771..628367 +

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Properties
Property NameValue
DescriptionRetinoblastoma binding protein 9
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:627771..628367 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR010662Hydrolase_RBBP9/YdeN
Homology
BLAST of NO20G02110 vs. NCBI_GenBank
Match: EWM22025.1 (retinoblastoma binding protein 9 [Nannochloropsis gaditana])

HSP 1 Score: 313.5 bits (802), Expect = 4.600e-82
Identity = 142/189 (75.13%), Postives = 165/189 (87.30%), Query Frame = 0
Query:    2 PSTSTAAHRLVIVPGNGGGDVTQANWYGWAQRSLASLPGIEEVLLQNMPDPYTARESIWLPFMKEKLKCDASTIIIGHSSGAEAAMRFAETNRVAGLVLVSACVTDLGNANERASGYYSRPWGWERIKNNAGFIIQFGSSDDPFIPWNEHQAVHEGTGSELYASDSEGHYMTVDFPLLKKVLGAKLSGD 191
            P  + +  RLVIVPGNGGG+VT+ANWYGWAQR+LA LPGIEEV L+NMPDPYTARES+WLPFMK++LKCDAST++IGHSSGAEAAMRFAE++RVAGLVLVSACVTDLG+ANERASGYY+RPW W  IK NAGF++QFGS+DDPFIPW E QAVHEG GS L+A  SEGH+MT  FP L++ L A+L  D
Sbjct:   27 PKMALSTRRLVIVPGNGGGEVTRANWYGWAQRALADLPGIEEVQLENMPDPYTARESVWLPFMKDRLKCDASTVVIGHSSGAEAAMRFAESHRVAGLVLVSACVTDLGDANERASGYYNRPWRWTEIKANAGFVLQFGSADDPFIPWEEQQAVHEGIGSTLFAYKSEGHFMTPTFPRLREALRAQLLAD 215          
BLAST of NO20G02110 vs. NCBI_GenBank
Match: OWF46054.1 (hydrolase RBBP9 [Mizuhopecten yessoensis])

HSP 1 Score: 240.0 bits (611), Expect = 6.400e-60
Identity = 109/178 (61.24%), Postives = 133/178 (74.72%), Query Frame = 0
Query:   10 RLVIVPGNGGGDVTQANWYGWAQRSLASLPGIEEVLLQNMPDPYTARESIWLPFMKEKLKCDASTIIIGHSSGAEAAMRFAETNRVAGLVLVSACVTDLGNANERASGYYSRPWGWERIKNNAGFIIQFGSSDDPFIPWNEHQAVHEGTGSELYASDSEGHYMTVDFPLLKKVLGAKL 188
            ++ I+PGNG GDV  ANWYGWA   +  +PG+    L+NMPDP TARESIW+PFM+ ++ CD STIIIGHSSGAEAAMRFAE  +V G++LVSAC+TDLG+ NER SGYYSRPW WE+IK N  FI+QFGS+DDPFI W EHQ V +G  S L+     GH+M   FP L  V+ +KL
Sbjct:   74 KVAIIPGNGAGDVFSANWYGWAYEKINDIPGV-TADLRNMPDPITARESIWIPFMRGEMSCDESTIIIGHSSGAEAAMRFAEKYKVKGIILVSACITDLGDENERESGYYSRPWEWEKIKANTEFIVQFGSTDDPFIQWEEHQQVADGLQSALHKFSDRGHFMNSVFPELINVVKSKL 250          
BLAST of NO20G02110 vs. NCBI_GenBank
Match: XP_021362478.1 (putative hydrolase RBBP9 [Mizuhopecten yessoensis] >XP_021362479.1 putative hydrolase RBBP9 [Mizuhopecten yessoensis])

HSP 1 Score: 240.0 bits (611), Expect = 6.400e-60
Identity = 109/178 (61.24%), Postives = 133/178 (74.72%), Query Frame = 0
Query:   10 RLVIVPGNGGGDVTQANWYGWAQRSLASLPGIEEVLLQNMPDPYTARESIWLPFMKEKLKCDASTIIIGHSSGAEAAMRFAETNRVAGLVLVSACVTDLGNANERASGYYSRPWGWERIKNNAGFIIQFGSSDDPFIPWNEHQAVHEGTGSELYASDSEGHYMTVDFPLLKKVLGAKL 188
            ++ I+PGNG GDV  ANWYGWA   +  +PG+    L+NMPDP TARESIW+PFM+ ++ CD STIIIGHSSGAEAAMRFAE  +V G++LVSAC+TDLG+ NER SGYYSRPW WE+IK N  FI+QFGS+DDPFI W EHQ V +G  S L+     GH+M   FP L  V+ +KL
Sbjct:    2 KVAIIPGNGAGDVFSANWYGWAYEKINDIPGV-TADLRNMPDPITARESIWIPFMRGEMSCDESTIIIGHSSGAEAAMRFAEKYKVKGIILVSACITDLGDENERESGYYSRPWEWEKIKANTEFIVQFGSTDDPFIQWEEHQQVADGLQSALHKFSDRGHFMNSVFPELINVVKSKL 178          
BLAST of NO20G02110 vs. NCBI_GenBank
Match: XP_011421963.1 (PREDICTED: putative hydrolase RBBP9 isoform X3 [Crassostrea gigas] >EKC17187.1 Putative hydrolase RBBP9 [Crassostrea gigas])

HSP 1 Score: 238.8 bits (608), Expect = 1.400e-59
Identity = 105/178 (58.99%), Postives = 135/178 (75.84%), Query Frame = 0
Query:   10 RLVIVPGNGGGDVTQANWYGWAQRSLASLPGIEEVLLQNMPDPYTARESIWLPFMKEKLKCDASTIIIGHSSGAEAAMRFAETNRVAGLVLVSACVTDLGNANERASGYYSRPWGWERIKNNAGFIIQFGSSDDPFIPWNEHQAVHEGTGSELYASDSEGHYMTVDFPLLKKVLGAKL 188
            ++ I+PGNG GDV  ANWYGWA + +  +  +    L+NMPDP TA+ESIW+PFM+E+++CD +T+IIGHSSGAEAAMRFAE  +V G++LVSACVTDLG+ NERASGYYSRPW W  IK N  F++QFGS+DDPFIPW E QAV +G  S+L     +GH+M   FP L +V+  K+
Sbjct:    2 KVAIIPGNGAGDVFHANWYGWAHKQINKMENV-SCDLRNMPDPITAKESIWIPFMREQMECDENTVIIGHSSGAEAAMRFAEKYKVKGIILVSACVTDLGDDNERASGYYSRPWDWTSIKANTDFVVQFGSTDDPFIPWEEQQAVADGLSSDLRKFSDKGHFMNSSFPQLMEVVKEKI 178          
BLAST of NO20G02110 vs. NCBI_GenBank
Match: XP_011421961.1 (PREDICTED: putative hydrolase RBBP9 isoform X2 [Crassostrea gigas])

HSP 1 Score: 238.8 bits (608), Expect = 1.400e-59
Identity = 105/178 (58.99%), Postives = 135/178 (75.84%), Query Frame = 0
Query:   10 RLVIVPGNGGGDVTQANWYGWAQRSLASLPGIEEVLLQNMPDPYTARESIWLPFMKEKLKCDASTIIIGHSSGAEAAMRFAETNRVAGLVLVSACVTDLGNANERASGYYSRPWGWERIKNNAGFIIQFGSSDDPFIPWNEHQAVHEGTGSELYASDSEGHYMTVDFPLLKKVLGAKL 188
            ++ I+PGNG GDV  ANWYGWA + +  +  +    L+NMPDP TA+ESIW+PFM+E+++CD +T+IIGHSSGAEAAMRFAE  +V G++LVSACVTDLG+ NERASGYYSRPW W  IK N  F++QFGS+DDPFIPW E QAV +G  S+L     +GH+M   FP L +V+  K+
Sbjct:   14 KVAIIPGNGAGDVFHANWYGWAHKQINKMENV-SCDLRNMPDPITAKESIWIPFMREQMECDENTVIIGHSSGAEAAMRFAEKYKVKGIILVSACVTDLGDDNERASGYYSRPWDWTSIKANTDFVVQFGSTDDPFIPWEEQQAVADGLSSDLRKFSDKGHFMNSSFPQLMEVVKEKI 190          
BLAST of NO20G02110 vs. NCBI_GenBank
Match: XP_011421960.2 (PREDICTED: putative hydrolase RBBP9 isoform X1 [Crassostrea gigas])

HSP 1 Score: 238.8 bits (608), Expect = 1.400e-59
Identity = 105/178 (58.99%), Postives = 135/178 (75.84%), Query Frame = 0
Query:   10 RLVIVPGNGGGDVTQANWYGWAQRSLASLPGIEEVLLQNMPDPYTARESIWLPFMKEKLKCDASTIIIGHSSGAEAAMRFAETNRVAGLVLVSACVTDLGNANERASGYYSRPWGWERIKNNAGFIIQFGSSDDPFIPWNEHQAVHEGTGSELYASDSEGHYMTVDFPLLKKVLGAKL 188
            ++ I+PGNG GDV  ANWYGWA + +  +  +    L+NMPDP TA+ESIW+PFM+E+++CD +T+IIGHSSGAEAAMRFAE  +V G++LVSACVTDLG+ NERASGYYSRPW W  IK N  F++QFGS+DDPFIPW E QAV +G  S+L     +GH+M   FP L +V+  K+
Sbjct:   24 KVAIIPGNGAGDVFHANWYGWAHKQINKMENV-SCDLRNMPDPITAKESIWIPFMREQMECDENTVIIGHSSGAEAAMRFAEKYKVKGIILVSACVTDLGDDNERASGYYSRPWDWTSIKANTDFVVQFGSTDDPFIPWEEQQAVADGLSSDLRKFSDKGHFMNSSFPQLMEVVKEKI 200          
BLAST of NO20G02110 vs. NCBI_GenBank
Match: XP_013381212.1 (putative hydrolase RBBP9 [Lingula anatina] >XP_013381213.1 putative hydrolase RBBP9 [Lingula anatina])

HSP 1 Score: 237.7 bits (605), Expect = 3.200e-59
Identity = 105/168 (62.50%), Postives = 130/168 (77.38%), Query Frame = 0
Query:   10 RLVIVPGNGGGDVTQANWYGWAQRSLASLPGIEEVLLQNMPDPYTARESIWLPFMKEKLKCDASTIIIGHSSGAEAAMRFAETNRVAGLVLVSACVTDLGNANERASGYYSRPWGWERIKNNAGFIIQFGSSDDPFIPWNEHQAVHEGTGSELYASDSEGHYMTVDFP 178
            R+VI+PGNG GDV  ANWYGW    L +   I    L+NMPDP TARES+W+PFMKE LKCD STII+GHSSGA+AAMR+AE  +V G+++VS CVTDLG+ NERASGYY+RPW WE+I+ NA F++QFGS+DDPFIPW E Q VH+G  S+L+  + +GH M   FP
Sbjct:    4 RVVIIPGNGAGDVYHANWYGWLHNKLNTKENI-PCALENMPDPVTARESVWIPFMKETLKCDESTIIVGHSSGAQAAMRYAEKYKVLGIIVVSGCVTDLGDENERASGYYNRPWEWEKIRANATFVLQFGSTDDPFIPWEEQQQVHQGLQSKLHKYEDKGHCMNSTFP 170          
BLAST of NO20G02110 vs. NCBI_GenBank
Match: XP_022321898.1 (LOW QUALITY PROTEIN: putative hydrolase RBBP9 [Crassostrea virginica])

HSP 1 Score: 236.5 bits (602), Expect = 7.100e-59
Identity = 105/178 (58.99%), Postives = 132/178 (74.16%), Query Frame = 0
Query:   10 RLVIVPGNGGGDVTQANWYGWAQRSLASLPGIEEVLLQNMPDPYTARESIWLPFMKEKLKCDASTIIIGHSSGAEAAMRFAETNRVAGLVLVSACVTDLGNANERASGYYSRPWGWERIKNNAGFIIQFGSSDDPFIPWNEHQAVHEGTGSELYASDSEGHYMTVDFPLLKKVLGAKL 188
            ++ I+PGNG GDV  ANWYGWA + +  +  I    LQNMPDP TARESIW+PFM++ + CD  TIIIGHSSGAEAAMRFAE  +V G++LVSACVTD G+ NE+ASGYYSRPW W  IK+N  F++QFGS+DDPF+PW E QAV +G  S+L     +GH+M   FP L +++  KL
Sbjct:    2 KITIIPGNGAGDVFHANWYGWAHKQINKMENI-SCDLQNMPDPITARESIWIPFMRDHMGCDEDTIIIGHSSGAEAAMRFAEKYKVKGIILVSACVTDXGDDNEKASGYYSRPWDWAAIKSNTDFVVQFGSTDDPFMPWEEQQAVADGLNSDLQKFSDKGHFMNSSFPQLLQIVKEKL 178          
BLAST of NO20G02110 vs. NCBI_GenBank
Match: XP_002606619.1 (hypothetical protein BRAFLDRAFT_277797 [Branchiostoma floridae] >EEN62629.1 hypothetical protein BRAFLDRAFT_277797 [Branchiostoma floridae])

HSP 1 Score: 234.6 bits (597), Expect = 2.700e-58
Identity = 104/176 (59.09%), Postives = 135/176 (76.70%), Query Frame = 0
Query:    8 AHRLVIVPGNGGGDVTQANWYGWAQRSLASLPGIEEVLLQNMPDPYTARESIWLPFMKEKLKCDASTIIIGHSSGAEAAMRFAETNRVAGLVLVSACVTDLGNANERASGYYSRPWGWERIKNNAGFIIQFGSSDDPFIPWNEHQAVHEGTGSELYASDSEGHYMTVDFPLLKKVL 184
            A R VIVPGNG GDV  +NWY W + +L  +P   +  L+NMPDP  ARE+IW+PFM+E+L+CD  TI+IGHSSGAEAA+R+AE  +V G+VLVSACVTDLG+ NERASGYYSRPW W+++K N  +++QFGS DDPFIPW E Q V +G  +EL+   + GH+M+ DFP L +V+
Sbjct:    5 AERAVIVPGNGAGDVYNSNWYDWVKSNLDDIPNF-QCTLKNMPDPVMARENIWIPFMREELQCDERTIVIGHSSGAEAAIRYAEQYQVFGIVLVSACVTDLGDENERASGYYSRPWQWDKVKANTRWVVQFGSRDDPFIPWEEQQQVAQGLSTELHKFANRGHFMSYDFPELVEVV 179          
BLAST of NO20G02110 vs. NCBI_GenBank
Match: XP_005111078.1 (PREDICTED: putative hydrolase RBBP9 isoform X1 [Aplysia californica])

HSP 1 Score: 233.8 bits (595), Expect = 4.600e-58
Identity = 109/183 (59.56%), Postives = 133/183 (72.68%), Query Frame = 0
Query:    1 MPSTSTAAHRLVIVPGNGGGDVTQANWYGWAQRSLASLPGIEEVLLQNMPDPYTARESIWLPFMKEKLKCDASTIIIGHSSGAEAAMRFAETNRVAGLVLVSACVTDLGNANERASGYYSRPWGWERIKNNAGFIIQFGSSDDPFIPWNEHQAVHEGTGSELYASDSEGHYMTVDFPLLKKVL 184
            +P  S    R VIVPGNG GDV +ANWYGW  R L       E  L+NMPDP TARES+WLPFM+++L+CD +T+I+GHSSGAEAAMR+AE+++V  +VLVSACVTDLG+ NE ASGYY+RPW WE IK N   I QFGS+DD FIPW+E Q V EG  S+L+    +GH+M   FP L K L
Sbjct:   41 VPMASCNKVRFVIVPGNGAGDVHRANWYGWLFRKLCDAG--MECCLENMPDPITARESVWLPFMEKELRCDENTVIVGHSSGAEAAMRYAESHKVYSIVLVSACVTDLGDPNEAASGYYNRPWDWESIKGNVKVIAQFGSTDDSFIPWSEQQQVVEGLSSKLFEFSDKGHFMNSQFPQLLKYL 221          
The following BLAST results are available for this feature:
BLAST of NO20G02110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22025.14.600e-8275.13retinoblastoma binding protein 9 [Nannochloropsis ... [more]
OWF46054.16.400e-6061.24hydrolase RBBP9 [Mizuhopecten yessoensis][more]
XP_021362478.16.400e-6061.24putative hydrolase RBBP9 [Mizuhopecten yessoensis]... [more]
XP_011421963.11.400e-5958.99PREDICTED: putative hydrolase RBBP9 isoform X3 [Cr... [more]
XP_011421961.11.400e-5958.99PREDICTED: putative hydrolase RBBP9 isoform X2 [Cr... [more]
XP_011421960.21.400e-5958.99PREDICTED: putative hydrolase RBBP9 isoform X1 [Cr... [more]
XP_013381212.13.200e-5962.50putative hydrolase RBBP9 [Lingula anatina] >XP_013... [more]
XP_022321898.17.100e-5958.99LOW QUALITY PROTEIN: putative hydrolase RBBP9 [Cra... [more]
XP_002606619.12.700e-5859.09hypothetical protein BRAFLDRAFT_277797 [Branchiost... [more]
XP_005111078.14.600e-5859.56PREDICTED: putative hydrolase RBBP9 isoform X1 [Ap... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002756NSK002756Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02110.1NO20G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595007gene_6434Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100881g3gene8410Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02110.1NO20G02110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02110 ID=NO20G02110|Name=NO20G02110|organism=Nannochloropsis oceanica|type=gene|length=597bp
ATGCCATCAACGTCCACTGCAGCCCACCGACTTGTTATTGTGCCTGGTAA
TGGTGGCGGCGACGTAACACAGGCCAACTGGTACGGGTGGGCCCAAAGGT
CTTTGGCAAGTCTGCCCGGAATCGAGGAAGTCCTGCTCCAGAATATGCCG
GACCCTTACACGGCACGCGAGAGCATTTGGCTGCCATTCATGAAAGAAAA
GTTGAAATGCGATGCGTCCACCATCATCATCGGTCACTCGAGCGGGGCCG
AGGCCGCCATGCGCTTTGCCGAAACCAACCGCGTAGCAGGCTTGGTACTG
GTATCGGCGTGTGTCACGGACCTGGGTAATGCCAATGAACGTGCGAGTGG
CTATTACAGCAGGCCGTGGGGATGGGAACGCATCAAGAACAATGCCGGAT
TCATTATTCAATTTGGAAGCTCGGATGACCCCTTCATACCATGGAACGAG
CATCAAGCCGTTCATGAGGGGACAGGGAGCGAGTTGTATGCGTCCGACAG
CGAAGGACACTACATGACTGTAGATTTCCCGCTGCTCAAGAAGGTGTTGG
GCGCAAAGTTGAGTGGTGATCCTGGTAAGAAAAAAGAAATGGAATAA
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protein sequence of NO20G02110.1

>NO20G02110.1-protein ID=NO20G02110.1-protein|Name=NO20G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MPSTSTAAHRLVIVPGNGGGDVTQANWYGWAQRSLASLPGIEEVLLQNMP
DPYTARESIWLPFMKEKLKCDASTIIIGHSSGAEAAMRFAETNRVAGLVL
VSACVTDLGNANERASGYYSRPWGWERIKNNAGFIIQFGSSDDPFIPWNE
HQAVHEGTGSELYASDSEGHYMTVDFPLLKKVLGAKLSGDPGKKKEME*
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Synonyms
Publications