NO20G01980, NO20G01980 (gene) Nannochloropsis oceanica

Overview
NameNO20G01980
Unique NameNO20G01980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2588
Alignment locationchr20:586382..588969 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:586382..588969 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036867R3H_dom_sf
Homology
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BLAST of NO20G01980 vs. NCBI_GenBank
Match: XP_002907629.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY64193.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-7
Identity = 63/222 (28.38%), Postives = 99/222 (44.59%), Query Frame = 0 
Query:  219 SNFSTLMAAENTDLRERFLAGYGEKRGAETRRARGRSTPSLLKDAEARFLRLESRLRRLLTQLVGTDAHMGLFLEDVEALLRRFMEGGGRLLLKGSXXXXXXXXXXXXXXXXEDSKIEGGSEALARWLARPLYVKKDS-----LVLPLNNSAFFRLLIHGCCQYYGLRSHSENLPQDSGEAEEVRAVVVAKPSAMLAASWSANSSMTMCDFIKNHRLNQHLV 436
            SNF  L   +N DL+  F  G G +        R R T     DAE  F R++ R R L+ +   + A   LF+E VE ++  F++                            S++E  +  L R L  P+ + K +     L+LPL +SAF RL+IH  CQ+YG+RS +E     +      + +V+  P     A  +A   +++C+FI+  R+ Q  V
Sbjct:  150 SNFQKLAEPQNEDLQIEFRKGGGARVNNRPHAPRNRRTDE-WNDAEQMFTRVDRRARTLMLRSFSSFA---LFIEAVEYVVLYFIQ-----------------------WREVPSELEIAT-PLFRMLKHPIELMKANEKDVRLILPLLDSAFHRLIIHSVCQFYGVRSRTE-----ANRRLNTKIMVLKSPKRKFLADDAA--QISLCEFIRETRIAQRHV 336
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BLAST of NO20G01980 vs. NCBI_GenBank
Match: ETL27798.1 (hypothetical protein L916_18722 [Phytophthora parasitica])

HSP 1 Score: 64.7 bits (156), Expect = 8.700e-7
Identity = 61/223 (27.35%), Postives = 99/223 (44.39%), Query Frame = 0 
Query:  219 SNFSTLMAAENTDLRERFLAGYGEKRGAETRRARGRSTPSLLKDAEARFLRLESRLRRLLTQLVGTDAHMGLFLEDVEALLRRFMEGGGRLLLKGSXXXXXXXXXXXXXXXXEDSKIEGGSEALARWLARPLYVKKDS-----LVLPLNNSAFFRLLIHGCCQYYGLRSHSENLPQDSGEAEEVRAVVVAKPSAMLAASWSANSSMTMCDFIKNHRL-NQHLV 436
            SNF  L   +N DL+  F  G G      +   R R       DAE  F R++ R R L+ +   + A    F+E VE ++  F++                            S++E  +  L R L  P+ + K +     L+LPL +SAF RL+IH  CQ+YG+RS +E     +      + +V+  P   + A   A   +++C+FI+  R+  +H+V
Sbjct:  150 SNFQKLAEPQNEDLQTEFRKGGGAHENNRSHAPRNRRKDE-WNDAEQMFTRVDRRARTLMLRSFSSFAP---FIEAVEYVVLHFIQ-----------------------WREVPSELEIAT-PLFRMLKHPIELMKANEKDVRLILPLLDSAFHRLIIHSVCQFYGVRSRTE-----ANRRLNTKIMVLKSPKKKILADDVA--QISLCEFIRETRIARRHVV 337
The following BLAST results are available for this feature:
BLAST of NO20G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_002907629.11.000e-728.38conserved hypothetical protein [Phytophthora infes... [more]
ETL27798.18.700e-727.35hypothetical protein L916_18722 [Phytophthora para... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002737NSK002737Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01980.1NO20G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594956gene_6420Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01980.1NO20G01980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01980 ID=NO20G01980|Name=NO20G01980|organism=Nannochloropsis oceanica|type=gene|length=2588bp
GCGCCAAAACGAACGCTGATCCTGCAACCAAGTTCACCCAGTCATAACAC
TTGTACATCTAGCAAAACCATCCCAGGCTTTGTTATCTTCCTCGACATGC
TTATCGTTGAGTTCTAGGCGGGGTCAAGCAGATCGTCCTGCGTTGCGCCG
TCTGAGCGTCTCGCACCCCCTCGAATACGTTAACATTCAGCAGGTGGAGG
GCAAACGTCTACAGGACGAATTCATTCACGTTCCCATACATGAAGGGTCG
ACGATGTCAGGCCAGGCCAGGCCAGGCCCAGCCCACACACCACTTCCGGG
CCGATGGGGACGTGGGCGGAAGGCGACTCGGCGTTAAGCTCCAGCTTTGA
TGCCACCTCGGACTGCGCGGGGATTTACGCAATTATATTCTGTCATCCAT
GCCCTCTTTCTCCTCCCTGCCACGATAGTACAGGAACTCTGGTCGGCACC
TTTTGGAGCTGTTAAATTATCTTCAGACCATCGCTCTCTAATCGGAGCAC
GTGGCCGCAAAAGTCGGAGGAGGGCTGCGAGTGATTTCCCCGCCCAGCCT
AACCAGAGGAATGGCGTCCTGATCGACCCCCTTATCCCCTGCCTTACCCA
GCCAAGCCAGTGAGTGTACGAGATTGCCTTATTTTTTCTTGCGTGGTTGC
GCATCCGTGTATTTGGTCTTCAATCCGTAAGGTTGAAAGGTGTGTAAGTG
CGTGCGTGTGTGTGTACGTGCATCTTAAGCGCCTACATCCATTCCTCATC
CTGAATAAACTACGTGTTTGATTGGCTGAATACCCCGACCCAGTCATGTC
GTCCTCCAAGCTTTTCCCCGGTGTCGGAAAGGCGGTAGACCGGAGCAACA
GCAGCGCCGAAGGAGAAGTAGGTCATTCTTCGTCCAGCAGCAGGAGCAGC
AGCACAGGTAGGGGCGTCAGCGGGGGAGGGAATGGCAGCCGCGACAACAC
CCCAATCATCGCCCGTTACGCCATTTTATCGGCGGCTTCAGGGGTAGGGA
CAGGGGCGGTGGCAGCTGGCACGGTGGTAGAAGGCCGTGGTGTCACGTCT
TCGGTGGTTGTGGGCTCGGCGGCGCTTCTTCTCGATGTGGGGGGAGGAGG
CGAGCCCCGGTCGTCGACGCCCGCTCGCTTGTCGCGTGTCTTAACCCCAC
TCAAAGGCCAAAACCGACGGCTTACCCACGCCATGGCTGGTACCGCCACG
ATATTTGCAGACTTGCAGGCGCGCGAGGACCAGCAACGTCAGCAAGCAGA
AGCTGCTGCAGCGGCGGCGGGTCAGCGACGCATTGAGCGTCGCTCTCGCA
GAAAAATGCGAAGATGGGCCAACGACCGTTTGCTGGGCGTGGCGCAAATC
TGCAGCAGCTTGCACAATGGTGGCCTGGAGGGGGAAGAGGAGAGTACGAA
GGCAGTGGCGGAAGGAGAGTACGGGCCGTTTGTGGACCGGGCACAAATCA
GTAATTTTTCAACGTTGATGGCGGCAGAGAACACAGACCTGCGGGAGCGA
TTTTTGGCAGGGTATGGGGAGAAGCGTGGAGCAGAGACAAGAAGGGCGAG
AGGAAGGTCGACGCCGTCGCTCTTGAAGGATGCGGAGGCGCGATTTCTGC
GGTTGGAGTCTCGGTTACGGAGGCTGTTGACGCAGCTGGTGGGAACGGAT
GCGCACATGGGGTTGTTCTTGGAGGATGTGGAAGCGCTGCTGCGTAGATT
CATGGAAGGGGGGGGTAGGCTGCTTTTGAAAGGTAGTGGAGGAGCAGGAG
CACGAAAAGGAGCAGGAGGGCATGGCGGCGAGAAAGAGGACAGCAAGATT
GAGGGTGGGAGTGAGGCTCTGGCCCGGTGGCTGGCCCGGCCGTTGTACGT
AAAGAAGGATTCCTTGGTGCTGCCTTTGAACAACTCAGCTTTCTTCCGCC
TTCTCATCCACGGGTGCTGCCAGTACTATGGCCTCCGCTCGCACAGCGAG
AACCTGCCTCAGGACAGCGGGGAGGCCGAGGAAGTGCGGGCGGTGGTGGT
TGCCAAGCCTTCCGCCATGCTGGCTGCCTCGTGGTCCGCCAACTCCTCCA
TGACCATGTGTGACTTCATCAAGAACCATCGACTTAACCAGCATCTTGTG
CCTAAGCGCCGTGGCGGGAGATGTCTAAACGAGGCGTCTGAGGAAGAATG
CGTCGTCGCGCGTGCTGTTGCTCCTGTCGTGCTCAAACCTGTGAAAACCT
GATGTATTTTACGCGATAAATACGCTAGGGGGGTAGCGGGACGAAGGAGA
AGGAGAAAGGTGGACAAGGAAGGAAGAGAAGGAAGAAAAAGCGCAGGATG
GAAGAAGGGAAGTGATTGGTCGAGGTGGGAAGGGTAGTAATAACAGGCAC
TGTTTGGGGAAGGGGTTGAAGACATGTGTCCTCAACTTAACTGTAGATTA
GCAATCGGGGAAGATAGGGTGTGTGTTCTCTATACATACAAATGCATGTG
AAAGAAAACGAGGGAGGGTGGGAGGCTGCACGCACTCATATGGTGTGATC
GGGAGCCCAGGGATGGAAGCAAAAGGGAGCGTAATTTATAATTTTTCCTC
GATTTCCGAAATTTTTCAAAGCCAAAAAGACATTCACT
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protein sequence of NO20G01980.1

>NO20G01980.1-protein ID=NO20G01980.1-protein|Name=NO20G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MSSSKLFPGVGKAVDRSNSSAEGEVGHSSSSSRSSSTGRGVSGGGNGSRD
NTPIIARYAILSAASGVGTGAVAAGTVVEGRGVTSSVVVGSAALLLDVGG
GGEPRSSTPARLSRVLTPLKGQNRRLTHAMAGTATIFADLQAREDQQRQQ
AEAAAAAAGQRRIERRSRRKMRRWANDRLLGVAQICSSLHNGGLEGEEES
TKAVAEGEYGPFVDRAQISNFSTLMAAENTDLRERFLAGYGEKRGAETRR
ARGRSTPSLLKDAEARFLRLESRLRRLLTQLVGTDAHMGLFLEDVEALLR
RFMEGGGRLLLKGSGGAGARKGAGGHGGEKEDSKIEGGSEALARWLARPL
YVKKDSLVLPLNNSAFFRLLIHGCCQYYGLRSHSENLPQDSGEAEEVRAV
VVAKPSAMLAASWSANSSMTMCDFIKNHRLNQHLVPKRRGGRCLNEASEE
ECVVARAVAPVVLKPVKT*
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Synonyms
Publications