NO20G01940, NO20G01940 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G01940 vs. NCBI_GenBank
Match: EWM22054.1 (Biotin/lipoate A/B protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 434.1 bits (1115), Expect = 3.500e-118 Identity = 207/270 (76.67%), Postives = 231/270 (85.56%), Query Frame = 0 Query: 1 MSRRPAVHLLRLSKAVNIKDQLRLEEALLRHDTRNWCLLKDGEPAGVMARPTIVLGIGGKASKLVELERVNQDRVPLLRRFSGGGTVIVDHDSLFITFIMNTEQVTPKQPYPRPIMEWTAGVYGPVFDRLRTTQTEPFQLRENDYVFGPLKFGGNAQSIVKDRWLHHTSFLWDFQHPNMDYLALPERRPEYRQNRCHGAFLTRLKEHTLQQDRAALFRELEVELGVHFDVHIADEAEVRAEVIDDKLGGMVMWAEKARTRDVSPVEELAK 271 MS RPA+HLLRL AV IKDQL LEEALLRHDTRNWCLLKDGEPAG RPTIVLGIGGK SKLV L+RV QD +P+LRRFSGGGTVIVD DSLF+TFIMNT +VTP QPYPRPIMEWTAG+Y PVF+RLR+ QT+PF+LRENDYVFG LKFGGNAQSIVKDRWLHHTSFLWDFQ NM+YL LPERRPEYRQ+R H +FLT LK+HT Q DR ALFRELE+ELG HF V A E +VR++V++ +LGGM W +KARTR VSP EEL+K Sbjct: 1 MSTRPALHLLRLRNAVGIKDQLWLEEALLRHDTRNWCLLKDGEPAGGTGRPTIVLGIGGKPSKLVHLDRVIQDEIPVLRRFSGGGTVIVDQDSLFVTFIMNTVEVTPNQPYPRPIMEWTAGLYRPVFERLRSAQTKPFELRENDYVFGSLKFGGNAQSIVKDRWLHHTSFLWDFQRSNMEYLTLPERRPEYRQDRSHSSFLTSLKDHTPQGDRLALFRELELELGSHFRVQAASEPDVRSDVVERRLGGMEAWGKKARTRQVSPAEELSK 270
BLAST of NO20G01940 vs. NCBI_GenBank
Match: GAY02925.1 (Hypothetical protein PINS_010746 [Pythium insidiosum]) HSP 1 Score: 233.0 bits (593), Expect = 1.200e-57 Identity = 122/236 (51.69%), Postives = 149/236 (63.14%), Query Frame = 0 Query: 4 RPAVHLLRLSKAVNIKDQLRLEEALLRHD-TRNWCLLKDGEPAGVMARPTIVLGIGGKASKLVELERVNQDRVPLLRRFSGGGTVIVDHDSLFITFIMNTEQVTPKQPYPRPIMEWTAGVYGPVFDRLRTTQTEPFQLRENDYVFGPLKFGGNAQSIVKDRWLHHTSFLWDFQHPNMDYLALPERRPEYRQNRCHGAFLTRLKEHTLQQDRAALFRELEVELGVHFDVHIADEAEV 239 +P + LRL + V I +QLR+EEAL R D RNW L + A PTIV+GI GK +L+ L+ V +D +P+L+RFSGGGTVIVDH+++F TFI N + PYPR IM W+ + P F+RL + PF LRE+DYVFG KFGGNAQSI KDRWLHHTSFLWDF NM+YL P R+P YR R H FL L++ R L EL EL VHFDV EV Sbjct: 3 KPRLSFLRLHR-VPIHEQLRIEEALFRVDRQRNWFLYNEES-----APPTIVMGISGKPERLLHLDSVKRDGIPVLKRFSGGGTVIVDHNTVFTTFICNVDSFPMVAPYPREIMAWSNTFFAPFFNRLVADPSRPFALREDDYVFGDRKFGGNAQSISKDRWLHHTSFLWDFNPRNMEYLTNPARQPAYRNQRDHSEFLCTLQDVLTVPTREVLASELRSELSVHFDVEDVSVDEV 232
BLAST of NO20G01940 vs. NCBI_GenBank
Match: GAY02863.1 (Hypothetical protein PINS_010675 [Pythium insidiosum]) HSP 1 Score: 232.6 bits (592), Expect = 1.500e-57 Identity = 122/236 (51.69%), Postives = 149/236 (63.14%), Query Frame = 0 Query: 4 RPAVHLLRLSKAVNIKDQLRLEEALLRHD-TRNWCLLKDGEPAGVMARPTIVLGIGGKASKLVELERVNQDRVPLLRRFSGGGTVIVDHDSLFITFIMNTEQVTPKQPYPRPIMEWTAGVYGPVFDRLRTTQTEPFQLRENDYVFGPLKFGGNAQSIVKDRWLHHTSFLWDFQHPNMDYLALPERRPEYRQNRCHGAFLTRLKEHTLQQDRAALFRELEVELGVHFDVHIADEAEV 239 +P + LRL + V I +QLR+EEAL R D RNW L + A PTIV+GI GK +L+ L+ V +D +P+L+RFSGGGTVIVDH+++F TFI N + PYPR IM W+ + P F+RL + PF LRE+DYVFG KFGGNAQSI KDRWLHHTSFLWDF NM+YL P R+P YR R H FL L++ R L EL EL VHFDV EV Sbjct: 3 KPRLSFLRLHR-VPIHEQLRIEEALFRVDRQRNWFLYNEES-----APPTIVMGISGKPERLLHLDSVKRDGIPVLKRFSGGGTVIVDHNTVFTTFICNVDSFPMVAPYPREIMAWSNTFFAPFFNRLVADPSRPFALREDDYVFGDRKFGGNAQSISKDRWLHHTSFLWDFNPRNMEYLTNPARQPAYRNQRDHSEFLCTLQDVLTVPTREXLASELRSELSVHFDVEDVSVDEV 232
BLAST of NO20G01940 vs. NCBI_GenBank
Match: CBN78869.1 (Biotin/lipoate A/B protein ligase family [Ectocarpus siliculosus]) HSP 1 Score: 231.5 bits (589), Expect = 3.400e-57 Identity = 120/231 (51.95%), Postives = 152/231 (65.80%), Query Frame = 0 Query: 7 VHLLRLSKAVNIKDQLRLEEALLRHDTRNWCLLKDGEPAGVMARPTIVLGIGGKASKLVELERVNQDRVPLLRRFSGGGTVIVDHDSLFITFIMNTEQVTPKQPYPRPIMEWTAGVYGPVFDRLRTTQTEPFQLRENDYVFGPLKFGGNAQSIVKDRWLHHTSFLWDFQHPNMDYLALPERRPEYRQNRCHGAFLTRLKEHTLQQDRAALFRELEVELGVHF---DVHIAD 235 + +LRL K V I QL +EE L T NW +L +G P A PT+VLGI GK K+ LE V +D++PL++RFSGGGTVIVD ++F + I+N V +PYPR IM+W+ G+YGP F T LRENDYVFG LKFGGNAQ+I K RWLHHTSFLWDF NM YL +PE+RP+YR +R H AFLT LK+H + R L+ ++V G HF +V I+D Sbjct: 5 LRVLRL-KRVPIFQQLCIEEVLFYKTTSNWLVLNEGHP---QAHPTVVLGISGKPEKMCNLELVERDKIPLIKRFSGGGTVIVDGSTIFASLIVNQADVPECKPYPREIMDWSKGIYGPAFRSAVTKPELELGLRENDYVFGDLKFGGNAQAITKGRWLHHTSFLWDFDPTNMLYLQMPEKRPQYRGDRDHKAFLTPLKDHVGR--REDLWAAVKVAAGEHFVLEEVSISD 229
BLAST of NO20G01940 vs. NCBI_GenBank
Match: XP_004241831.1 (PREDICTED: uncharacterized protein LOC101252893 isoform X1 [Solanum lycopersicum]) HSP 1 Score: 230.3 bits (586), Expect = 7.600e-57 Identity = 111/208 (53.37%), Postives = 147/208 (70.67%), Query Frame = 0 Query: 5 PAVHLLRLSKAVNIKDQLRLEEALLRHDTRNWCLLKDGEPAGVMARPTIVLGIGGKASKLVELERVNQDRVPLLRRFSGGGTVIVDHDSLFITFIMNTEQVTPKQPYPRPIMEWTAGVYGPVFDRLRTTQTEPFQLRENDYVFGPLKFGGNAQSIVKDRWLHHTSFLWDFQHPNMDYLALPERRPEYRQNRCHGAFLTRLKEHTLQQD 213 P ++L+RL+ V I QL+LEE LLR + NWC++ DG PTIV+GI GK ++L+E+ V QD++P+++RFSGGGTVIVDH ++FITFI NT+ + QPYPRPIM W+ +Y VF + F LRENDYVFG KFGGNAQSI K RW+HHTSFLWD++ NM YL LP+R P+YRQ R H F+ R+K++ +Q+ Sbjct: 8 PLMNLVRLN-GVPILQQLQLEERLLRTSSHNWCIVNDG-----TNEPTIVMGISGKPAELLEIGSVLQDKIPVVKRFSGGGTVIVDHQTVFITFICNTDALPSVQPYPRPIMSWSGQLYSKVFQGV-----GDFSLRENDYVFGNRKFGGNAQSITKGRWVHHTSFLWDYEMMNMGYLKLPKRAPDYRQARDHSDFICRMKDYISRQE 204
BLAST of NO20G01940 vs. NCBI_GenBank
Match: XP_015077639.1 (PREDICTED: uncharacterized protein LOC107021481 [Solanum pennellii]) HSP 1 Score: 230.3 bits (586), Expect = 7.600e-57 Identity = 113/208 (54.33%), Postives = 147/208 (70.67%), Query Frame = 0 Query: 5 PAVHLLRLSKAVNIKDQLRLEEALLRHDTRNWCLLKDGEPAGVMARPTIVLGIGGKASKLVELERVNQDRVPLLRRFSGGGTVIVDHDSLFITFIMNTEQVTPKQPYPRPIMEWTAGVYGPVFDRLRTTQTEPFQLRENDYVFGPLKFGGNAQSIVKDRWLHHTSFLWDFQHPNMDYLALPERRPEYRQNRCHGAFLTRLKEHTLQQD 213 P ++L+RL+ V I QL+LEE LLR + NWC++ DG PTIV+GI GK ++L+E+ V QD+VP+++RFSGGGTVIVDH ++FITFI NT+ + QPYPRPIM W+ +Y VF + F LRENDYVFG KFGGNAQSI K RW+HHTSFLWD++ NM YL LP+R PEYRQ R H F+ R+K++ +Q+ Sbjct: 8 PLMNLVRLN-GVPILQQLQLEERLLRTSSHNWCIVNDG-----TNEPTIVMGISGKPAELLEIGPVLQDKVPVVKRFSGGGTVIVDHRTVFITFICNTDALPSVQPYPRPIMSWSGQLYSKVFQGV-----GDFSLRENDYVFGNRKFGGNAQSITKRRWVHHTSFLWDYEMMNMGYLKLPKRAPEYRQARDHSDFICRMKDYISRQE 204
BLAST of NO20G01940 vs. NCBI_GenBank
Match: XP_004973513.1 (uncharacterized protein LOC101769395 [Setaria italica] >KQL01924.1 hypothetical protein SETIT_014251mg [Setaria italica]) HSP 1 Score: 229.2 bits (583), Expect = 1.700e-56 Identity = 120/231 (51.95%), Postives = 149/231 (64.50%), Query Frame = 0 Query: 4 RPAVHLLRLSKAVNIKDQLRLEEALLRHDTRNWCLLKDGEPAGVMARPTIVLGIGGKASKLVELERVNQDRVPLLRRFSGGGTVIVDHDSLFITFIMNTEQVTPKQPYPRPIMEWTAGVYGPVFDRLRTTQTEPFQLRENDYVFGPLKFGGNAQSIVKDRWLHHTSFLWDFQHPNMDYLALPERRPEYRQNRCHGAFLTRLKEHTLQQDRAALFRELEVELGVHFDVHIAD 235 RP + L+ +S A I QL LEE LLR NWC++ DG A PTIV+G+ G+ S+LVE+E V +DRV ++RRFSGGGTVIVD ++F+TFI N V QP+PR IM W+ +YG VFD+ F LRENDY F KFGGNAQSI K+RW+HHTSFLWD+ NMDYL +P+R PEYR R H FL R+KE+ R+A + LG HF V AD Sbjct: 14 RPLMRLVTMSGA-PIMQQLHLEERLLRRTADNWCVINDG-----TAPPTIVMGVSGRVSELVEIEPVLRDRVSVVRRFSGGGTVIVDQGTVFVTFICNKSAVAGLQPFPRDIMSWSGQLYGKVFDKF-----GEFHLRENDYAFSRRKFGGNAQSITKNRWVHHTSFLWDYDVKNMDYLKIPKRAPEYRLARNHTDFLCRMKEY--MPSRSAFTDGVITALGEHFSVQPAD 231
BLAST of NO20G01940 vs. NCBI_GenBank
Match: XP_006353620.1 (PREDICTED: uncharacterized protein LOC102592930 [Solanum tuberosum]) HSP 1 Score: 228.8 bits (582), Expect = 2.200e-56 Identity = 112/208 (53.85%), Postives = 146/208 (70.19%), Query Frame = 0 Query: 5 PAVHLLRLSKAVNIKDQLRLEEALLRHDTRNWCLLKDGEPAGVMARPTIVLGIGGKASKLVELERVNQDRVPLLRRFSGGGTVIVDHDSLFITFIMNTEQVTPKQPYPRPIMEWTAGVYGPVFDRLRTTQTEPFQLRENDYVFGPLKFGGNAQSIVKDRWLHHTSFLWDFQHPNMDYLALPERRPEYRQNRCHGAFLTRLKEHTLQQD 213 P ++L+RL+ V I QL+LEE LLR + NWC++ DG PTIV+GI GK ++L+E+ V QD+VP+++RFSGGGTVIVDH ++FITFI NT+ + QPYPRPIM W+ +Y VF + F LRENDY FG KFGGNAQSI K RW+HHTSFLWD++ NM YL LP+R PEYRQ R H F+ R+K++ +Q+ Sbjct: 8 PLMNLVRLN-GVPILQQLQLEERLLRTSSHNWCIVNDG-----TNEPTIVMGISGKPAELLEIGPVLQDKVPVVKRFSGGGTVIVDHRTVFITFICNTDALPSVQPYPRPIMSWSGQLYSKVFQGV-----GDFSLRENDYAFGNRKFGGNAQSITKRRWVHHTSFLWDYEMMNMGYLKLPKRAPEYRQARDHSDFICRMKDYISRQE 204
BLAST of NO20G01940 vs. NCBI_GenBank
Match: PUZ51426.1 (hypothetical protein GQ55_6G185500 [Panicum hallii var. hallii]) HSP 1 Score: 228.4 bits (581), Expect = 2.900e-56 Identity = 121/239 (50.63%), Postives = 150/239 (62.76%), Query Frame = 0 Query: 4 RPAVHLLRLSKAVNIKDQLRLEEALLRHDTRNWCLLKDGEPAGVMARPTIVLGIGGKASKLVELERVNQDRVPLLRRFSGGGTVIVDHDSLFITFIMNTEQVTPKQPYPRPIMEWTAGVYGPVFDRLRTTQTEPFQLRENDYVFGPLKFGGNAQSIVKDRWLHHTSFLWDFQHPNMDYLALPERRPEYRQNRCHGAFLTRLKEHTLQQDRAALFRELEVELGVHFDVHIADEAEVRAEV 243 RP + L+ +S A I QL LEE LLR NWC++ DG PTIV+G+ G+ S+LVE+E V +DRVP++RRFSGGGTVIVD ++F+TFI N V QP+PR IM W+ +YG VFDR F LRENDY F KFGGNAQSI K+RW+HHTSFLWD+ NMDYL +P+R PEYR R H FL R+KE+ R+ + LG HF V D V + V Sbjct: 14 RPLMRLVTMSGA-PILQQLHLEERLLRRTEDNWCVINDG-----TMPPTIVMGVSGRVSELVEIEPVLRDRVPVVRRFSGGGTVIVDQGTVFVTFICNRSAVEGLQPFPRDIMSWSGQLYGKVFDRF-----GEFHLRENDYAFNHRKFGGNAQSITKNRWIHHTSFLWDYDVKNMDYLKIPKRAPEYRLARNHTDFLCRMKEYL--PSRSVFTDRVITALGEHFSVQPTDLETVLSTV 239
BLAST of NO20G01940 vs. NCBI_GenBank
Match: PAN35268.1 (hypothetical protein PAHAL_F02655 [Panicum hallii]) HSP 1 Score: 227.6 bits (579), Expect = 4.900e-56 Identity = 120/239 (50.21%), Postives = 151/239 (63.18%), Query Frame = 0 Query: 4 RPAVHLLRLSKAVNIKDQLRLEEALLRHDTRNWCLLKDGEPAGVMARPTIVLGIGGKASKLVELERVNQDRVPLLRRFSGGGTVIVDHDSLFITFIMNTEQVTPKQPYPRPIMEWTAGVYGPVFDRLRTTQTEPFQLRENDYVFGPLKFGGNAQSIVKDRWLHHTSFLWDFQHPNMDYLALPERRPEYRQNRCHGAFLTRLKEHTLQQDRAALFRELEVELGVHFDVHIADEAEVRAEV 243 RP + L+ +S A ++ QL LEE LLR NWC++ DG PTIV+G+ G+ S+LVE+E V +DRVP++RRFSGGGTVIVD ++F+TFI N V QP+PR IM W+ +YG VFDR F LRENDY F KFGGNAQSI K+RW+HHTSFLWD+ NMDYL +P+R PEYR R H FL R+KE+ R+ + LG HF V D V + V Sbjct: 14 RPLMRLVTMSGAPILR-QLHLEERLLRRTEDNWCVINDG-----TMPPTIVMGVSGRVSELVEIEPVLRDRVPVVRRFSGGGTVIVDQGTVFVTFICNRSAVEGLQPFPRDIMSWSGQLYGKVFDRF-----GEFHLRENDYAFNHRKFGGNAQSITKNRWIHHTSFLWDYDVKNMDYLKIPKRAPEYRLARNHTDFLCRMKEYL--PSRSVFTDRVITALGEHFSVQPTDLETVLSTV 239 The following BLAST results are available for this feature:
BLAST of NO20G01940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G01940 ID=NO20G01940|Name=NO20G01940|organism=Nannochloropsis oceanica|type=gene|length=1339bpback to top protein sequence of NO20G01940.1 >NO20G01940.1-protein ID=NO20G01940.1-protein|Name=NO20G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bpback to top Synonyms
Publications
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