NO20G01930, NO20G01930 (gene) Nannochloropsis oceanica

Overview
NameNO20G01930
Unique NameNO20G01930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1001
Alignment locationchr20:579217..580217 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:579217..580217 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G01930 vs. NCBI_GenBank
Match: EWM22041.1 (hypothetical protein Naga_100052g23 [Nannochloropsis gaditana])

HSP 1 Score: 157.5 bits (397), Expect = 3.900e-35
Identity = 98/192 (51.04%), Postives = 126/192 (65.62%), Query Frame = 0 
Query:    1 MPPEDGQSEVSVTTGIPVNSG--------SSTCSTTTVGAEHAFAALSMEGLSGDSAGATASSFITSTIVNASSSARASPPHTSPTHRTLPLEQAIPSTRAHSPLSLTQLCLVSIAENSAGLVSIEGLAEELCIRLLREVLVLGKLDFRLCRVFMESEHEELSKAVASLNLFDALGC-VPARGSGFGG-CRR 183
            MPPE+G + +S   G P  S         + + S+ T+ A  AF ALS+      S G    + +    +      +     TSPTHRTLPL +A+PSTRAH+P  LT LC+ +IA+N +GLVS+ GLAEELCIR+LRE+L+ GKLD+RLCRVF+ES HEELSKAV+SLNLFDALGC  P+ G+G G  CRR
Sbjct:    1 MPPEEGTTGIS-AAGPPTASSEGPHQTEPAQSRSSATLNAVQAFVALSLNAPLSGSLGHNMRTSVRQ--IEQPRPNQRLQTQTSPTHRTLPLNEAVPSTRAHTPPPLTHLCMATIADNCSGLVSVNGLAEELCIRILREILLRGKLDYRLCRVFIESGHEELSKAVSSLNLFDALGCGRPSGGAGLGSDCRR 189
The following BLAST results are available for this feature:
BLAST of NO20G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22041.13.900e-3551.04hypothetical protein Naga_100052g23 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002732NSK002732Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01930.1NO20G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594941gene_6413Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100052g23gene8392Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01930.1NO20G01930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01930 ID=NO20G01930|Name=NO20G01930|organism=Nannochloropsis oceanica|type=gene|length=1001bp
CTTGCCTCATCGCTCGCTCTCGGGGAGAGAGGAGACAAAGACAAGACATG
CTTCAAATAGGTTTAGATGTCTTGACAATATCTCACGCTTTTTCCGCCCA
TACTGTTGCCATGCCACACAAAGCAAGGCAGCCGCGCCGCTGGCACTAGG
TGGTCCCGTGGGCTGCCGCAGTCATCCTCGACTTCATCTTCTTGCTTCCT
GCTTACTCCCCCCCTCATCATAATGCCACCTGAGGATGGGCAATCAGAAG
TCTCGGTGACCACGGGCATTCCAGTCAACAGCGGCAGCTCAACCTGCTCA
ACTACGACAGTCGGGGCGGAGCATGCGTTTGCCGCCTTGAGCATGGAGGG
ACTATCAGGAGACTCGGCGGGTGCAACCGCGAGTTCATTCATCACCAGCA
CCATCGTCAATGCAAGCAGCAGCGCACGGGCCTCCCCGCCCCATACCTCT
CCCACGCACCGCACCCTACCTTTGGAGCAAGCTATTCCTTCCACTCGGGC
TCACAGCCCACTCTCCTTGACACAGCTTTGCTTGGTTTCAATCGCTGAGA
ATAGCGCGGGCTTGGTCTCGATAGAGGGGCTCGCGGAGGAGTTATGCATC
CGCCTGCTGCGAGAAGTGTTAGTACTGGGAAAGTTGGACTTTCGGTTATG
CCGGGTTTTTATGGAGAGTGAACATGAGGAATTAAGCAAAGCCGTGGCAA
GTTTGAATTTGTTCGACGCCTTGGGGTGTGTGCCTGCGAGAGGGAGTGGC
TTTGGAGGTTGCCGACGGTGAGAGAGACCGAGGGAGGACAGCTCGATGAA
GGAGTATACATAGAAAGCATAAATAAAGCATGCAGGTGAGATAGCAGCAT
GTAAATATTTGAGGGCAGTCGCACAAACGGATGGATTAGGGGGGAAGAGA
AGATGACGAGTGTAAAATGTGAACAAGAAGAGGATTGTGAGACTTAGACC
GGCTTGCGAACAAATTAGAAATAGGACAAAACGAATGAAGGCTTCTACCT
T
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protein sequence of NO20G01930.1

>NO20G01930.1-protein ID=NO20G01930.1-protein|Name=NO20G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MPPEDGQSEVSVTTGIPVNSGSSTCSTTTVGAEHAFAALSMEGLSGDSAG
ATASSFITSTIVNASSSARASPPHTSPTHRTLPLEQAIPSTRAHSPLSLT
QLCLVSIAENSAGLVSIEGLAEELCIRLLREVLVLGKLDFRLCRVFMESE
HEELSKAVASLNLFDALGCVPARGSGFGGCRR*
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Synonyms
Publications